Clc02G09210 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G09210
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal_L30 domain-containing protein
LocationClcChr02: 11969818 .. 11972793 (-)
RNA-Seq ExpressionClc02G09210
SyntenyClc02G09210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGTCTCTCTTCCTCCTTTTCTTGGAGAAGCTTGTGGAATATTTATAGGCGTCAAAAAGTTGATATCATGATGACCTGACACCTTTACATTAAATTTCAGCCACACTGCATAGACTTTTCAGATTGTCAGCCTATTTGTTCTGCCATGATCTGATTGGGTGTTGTCCTTTTTCATAATGACATGACAGCTGTTTGAGCATGCGTCTATTTCTACTTTTCAGATTGTCAACGCATAGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCGTTAGGAACATAAAAGCTCATCGTTTTTCAGGTATTTTCTTTTGTAAATAGTGCCAACGCATGGTGATACATTTTTCATCATTTAACTACCAAAATCATGCGTTTAACTCCAAAGTTACTCTAATTAAATCAAATAGTGACTATAATAACTTGTATTTCTACAAGTTATCAAAGAGATAAAATGTAATTAGCATATTTTTTCCATTTTCAATTGGAGAGAGAAAATGCATTTGACGTTTGATTTTTGATATTGTGGATATATTCCATTGTTTATTTGAGTACTATTTATTTTCATGTAATATATTTTATTGTTTATTTGACATATATCCAAGGTATTTTGATATGTATGACCTTATAATTAAGTATCGCTTGTGTATCGGTAATATATATGTGTATTCTAATGCAATTTTTATATGATGGTTTGACTTATTTGAGTTTGTCTATTATAATTCATTGTTTATTTTGAGTTTGTTTATATTTTGCATTATTATCTCATATATACTATAGTTTAGATTCGTGGTTATTTTTAAATATACGTTAGAACATTTGTCTTAAATGTTTGCAAATATTCTAACTAATATATAAAATATATTAGTAAAATTGACTAAATTTCACTTAAGTAAATTTAACAGAAACTCCTTAATAGAAATATCTAATTCTCATTATTGTTTCAAATTCAATTTAAAATCTCATGATTTTCAAATAAACAAAGCTATCTACCACTGTCTATAAATCACAAATGAACTTAATGTTCAATACATATTAGTGTATATATCATAAAACAAAAAGTTTCAATAAAATTTGAAGATATATATCATAGTATATATCGGAAAAGATATATATGTCACAGTATATATCGAAAAAGAACAAAATAGTTTCGATATAACTGTATCCATATCACTTCAATATAAACCATCCCGCACCGTCTAACTGTCATCATCCAGAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCGTTAGTGAAAAAACAAAAGCCATAATTTTTTTATTTTTAAATGAAAGGTCCAAGAGCCCTTATTTGAAGGCCTTTTATGTCAGAAAGCCCAAATTATTTTAATGTCGAGCAGGAGCAGCCCAAATGGACAATAAGTTATAACTAAATACAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACACAGCCTCCAATCTTCTCTTCGTCAGTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGGTCAATTTCAAAGCTCTCTGTTTTCTCCCTCTTTTTTCACTCTGTTTTGAAACCTTCTTTAATTTTAACCTAAATTATTAGGTAGGTAGTTACGTAATATGCATCTTCATCCTCAATCCAAGGTCAATTTATATGGTAAAGAAAATATATAAAAATGTATATAAATCTTTTTTTTAAGAAATTAACGAATCGCCTTATCCTACATTACTTTTAGAGGACTTTATTGAAAGCTTCAAGTGGATATGAAGTTGAAGTAAGTGCCTATTTGAGATGACGAAATCGTGGCATAGATGTGGTTTCTACTTAAAACTATCATCTATGTCTTTTTATGTCTTTTTATGTTTTAGTTGTGCAACTAGAGCATTTGGTAGAGCTTCCAATCTATTGAAGATGTTCATTTGTTTACTCGAAATTTGGGAACTGCAAAAAAGTCTTCCTTCCCAACAAATTGAAAGATTTCGTTGAGGTGCTTGGATGAGATTGTTGATGTGTTTGCGGAGAAAACTGTTTCTTAACCTTTGTTTTTGTTTGTAGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTTGCTTTATATACTTGTTCTCTACTGCGCACATGCACACACTACGCAAAAGCCTCATGGGGACTGAATGTTGAATGTTGTTGTTTTTTGTTTTTATTTTTATTTTTTTTGTTATTTGATTATAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

mRNA sequence

ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

Coding sequence (CDS)

ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

Protein sequence

MLRILLSEEFEMEAGYGEGEIVQSFRLLNWLDAWSQPTRLDAWSQRIGSTHGFPLVLATASSLRTSIVCASFLNPASPCRGLVLWPISLPRAIFALPAKDARDLLAPCQKMHYIYLPRCPSPSGEEKRHWLRLQRKPLLIILLFIRLSNSIFRAYAVSPPTVSLVADHASISPSTISPRFALSPPPPILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS
Homology
[Close]
BLAST of Clc02G09210 vs. NCBI nr
Match: KAG6604875.1 (hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-50
Identity = 103/110 (93.64%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 188 ILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWN 247
           ILE+LDMNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWN
Sbjct: 32  ILEVLDMNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWN 91

Query: 248 TPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKS 298
           TPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPLVVNHLPAP S
Sbjct: 92  TPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPSS 141

[Close]
BLAST of Clc02G09210 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 4.3e-49
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLPAP SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. NCBI nr
Match: XP_038901296.1 (50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal protein L30 [Benincasa hispida] >XP_038901298.1 50S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 4.8e-48
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRLIVVETEEMYKARKQKVEQHKALRPP+VV+HLPAP S  AS
Sbjct: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLPAPISPLAS 108

[Close]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-04
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ LIVVE
Sbjct: 3   LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.4e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 4.4e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 209 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2   SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.8e-04
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Sbjct: 3   LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.8e-48
Identity = 100/107 (93.46%), Postives = 102/107 (95.33%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPA 301
           M+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP P S  A
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSSTSA 107

[Close]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]
BLAST of Clc02G09210 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-33
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 0 

Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H     S+PA+
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH-----SSPAT 103

The following BLAST results are available for this feature:
BLAST of Clc02G09210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604875.11.8e-5093.64hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023512952.14.3e-4996.30uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo][more]
XP_022944386.12.2e-4894.44uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet... [more]
KAG7010749.12.8e-4894.44rpmD [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038901296.14.8e-4895.3750S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal prot... [more]
BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8FS512.6e-0450.0050S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31... [more]
Q8NSX32.6e-0448.1550S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM... [more]
A4QBL54.4e-0448.1550S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=... [more]
A8ZV754.4e-0443.8650S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390... [more]
C3PL275.8e-0440.7450S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D... [more]
BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FUA41.0e-4894.44uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488... [more]
A0A1S3C2143.0e-4891.6750S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1[more]
A0A5A7VAZ63.0e-4891.6750S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1CI258.8e-4893.46uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0LN291.2e-4791.67Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160... [more]
BLAST of Clc02G09210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55140.12.1e-3364.81ribosomal protein L30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMTIGR01308TIGR01308coord: 212..265
e-value: 6.0E-18
score: 62.3
IPR005996Ribosomal protein L30, bacterial-typePANTHERPTHR15892MITOCHONDRIAL RIBOSOMAL PROTEIN L30coord: 194..299
IPR005996Ribosomal protein L30, bacterial-typeHAMAPMF_01371_BRibosomal_L30_Bcoord: 209..266
score: 14.914772
IPR005996Ribosomal protein L30, bacterial-typeCDDcd01658Ribosomal_L30coord: 212..265
e-value: 1.00104E-16
score: 70.913
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilyGENE3D3.30.1390.20coord: 210..271
e-value: 2.4E-17
score: 64.1
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilySUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 212..265
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 213..262
e-value: 1.5E-15
score: 56.8
NoneNo IPR availablePANTHERPTHR15892:SF4RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 194..299

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G09210.1Clc02G09210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome