Clc02G05470 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G05470
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr02: 5024638 .. 5025114 (+)
RNA-Seq ExpressionClc02G05470
SyntenyClc02G05470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTCCTTAAACTCAGAAACAAAAAGCAAGCAATTGTAGTTACGAGAAGCACTTTATCATATCTACTTATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAAATTCATGTGGAAAGTCCATTCTCTTTTTGTTTTTTAAAAGGATTCTTTGCTTGTTGTCTTATCCCCATATAAATTGCAATG

mRNA sequence

ATTGTCCTTAAACTCAGAAACAAAAAGCAAGCAATTGTAGTTACGAGAAGCACTTTATCATATCTACTTATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAAATTCATGTGGAAAGTCCATTCTCTTTTTGTTTTTTAAAAGGATTCTTTGCTTGTTGTCTTATCCCCATATAAATTGCAATG

Coding sequence (CDS)

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Protein sequence

MGIFKKNMLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQSPKEDKSIVTSLPYMN
Homology
BLAST of Clc02G05470 vs. NCBI nr
Match: KAE8646139.1 (hypothetical protein Csa_016560, partial [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
           MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 25  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 84

Query: 61  NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQS 94
           N E SE+N VD C+  K  + N NG    NMAPQS
Sbjct: 85  NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 116

BLAST of Clc02G05470 vs. NCBI nr
Match: KAA0036627.1 (hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK03365.1 hypothetical protein E5676_scaffold2392G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 62/118 (52.54%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 8   MLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQEPSEFND 67
           M++ VGVL+IST LIEITKA   I   GAPQ GVE+VCSPEDPRV+ L+YAN E SEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDHQHNINGDGLG--------NMAPQSP----------KEDKSIVTSLPYM 108
           VD C   K    N+N  G          N+APQSP          K  K++VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

BLAST of Clc02G05470 vs. ExPASy TrEMBL
Match: A0A0A0K4C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0

Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QEPSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            E SE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

BLAST of Clc02G05470 vs. ExPASy TrEMBL
Match: A0A0A0K7P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQS 94
          N E SE+N VD C+  K  + N NG    NMAPQS
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 92

BLAST of Clc02G05470 vs. ExPASy TrEMBL
Match: A0A5D3BWB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00270 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.4e-17
Identity = 62/118 (52.54%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 8   MLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQEPSEFND 67
           M++ VGVL+IST LIEITKA   I   GAPQ GVE+VCSPEDPRV+ L+YAN E SEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDHQHNINGDGLG--------NMAPQSP----------KEDKSIVTSLPYM 108
           VD C   K    N+N  G          N+APQSP          K  K++VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646139.14.6e-1762.11hypothetical protein Csa_016560, partial [Cucumis sativus][more]
KAA0036627.11.7e-1652.54hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK033... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4C81.3e-1758.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1[more]
A0A0A0K7P82.2e-1762.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1[more]
A0A5D3BWB18.4e-1752.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G05470.1Clc02G05470.1mRNA