Clc02G05080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G05080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 4398312 .. 4406555 (+)
RNA-Seq Expression	Clc02G05080
Synteny	Clc02G05080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGCTAGTAGCGCGGCTCGCTTCGCTTTTGTTAGGAGTAGGTGCTTCCCCTTAGTTGGGTTGGGGGAAGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGTATATTATATATATCTATATTTCAGAATTGATTCCTTCTAGAGGTAGGATTAGTTTTTTTAATGTGAATTATCTTTTAGATTTGACTAGTTAATATCGAATATCTAATTTATTTAGCTAACACAAATGTTTTATTTATTATTATCATTTTGAGATAGTTTTGTAATTGTTTTAAATAGCAAAGGTGCTAAAAATATTTTAAATAGAGTAAAATGTGATTGTCTATCAGAGACAGATAATGTCTATTACTGTCCATATTTATTATTATCTATCACTAGTAAACAGTGTCATTTTATTATATTTATAAATATTTTTATTCATTTTGTTTGAAAACAATCCTTTTAATTAGGTATGAAATTAAAGTATAATCAGAGTGATGTTAGAAACAGTAAAAACATTTGACAACAAATTATTTTAATCATTCAGTCCATATTATTTAAATATTTCTTTAGACCATTAAAAGTGTTTTTTAACCATTAATGTAACAATTTCAAAAGTAGTTAATAGTCAAATCTTAAAAGTGACTTTTGGTTAAATATTAAATCATATGGTCTTCTTGCATTTTCTTATTATGAAATAAGAATAATGTAAGATTAAAAGAACAAAAGAACCAAAGTAAATGAAACGAAAAAGTAGAGGGAACAATTAGATTCAATTGTGGTGTGTCTTACGAATGCATCATACACTACTATTTATAAAACATGGAATGATGAATGTTATAATATAAATTCAATGGGAGGTTATAAAACTTTGTAACTTAGGTATGTTGTGAATATCTACACTAAATGTTATTTATAATATGTATTATTATATTTATAATATTTCTAACTTTTTTCCATATTACTTTTATATTATAGTCTTACAGCATAATTTTTGCTCAAATGTTCTATGTTGTTGCAACTGTGCAAGATAACAAAAATTAAATGGTAAGAGATAAAAGAATCGGAAAACAAAAATCCAAATTATTCTACAACAATTTTATAGCAAAATTTGATGTTATGTGTTCCAAGTGAACTTGGACCTAGCGAAATATGCAAAAAATCAATGAAAAATAAAAGAAGATAAACTCAAGATAAAGTGGATATATCTAATCAAATCTAATCGTAACTTATAAAGATTAGGAAAGATTCATTAGCCTAGGAGGAAAAGGTAAAACTTAGCTCATTCTCTCCATAAATACATCATGACTCCATATGAGGAAACTTCAACTGGAACTTGATCTTTATCTGAAATTTAGAACTTCATCTTAAAACTTTCGATTCTTCCTTACTGACTTAGGCATCGGAGCCATTTTTCTTTATTTTATAGGTCCTCTCTTCTTCAACAATTTGTATCAATAGTTGACGTCGTTTGTGGGAAAGAAAGTGTTCTACTAATAATCTGCATACCTTACAAAATATGAGTAAGAGGGACGAGAACAAGACTTAGAACAGAGATAATTCAAACCAAGACCACCAACGGCAAAGAACAAGAAATCAAACATTACCTCAAGGTGAGGAAAGGCAGCCTCCGATTATCAGTCAAACAAAGCGATTTGAAGTTATGCCAAGCAAAGCTAACAAGACCAGTTGACTAAAATGAGAGGTGCAAATTATGTAAGGAAGGAGTCTAATTTGAGTTCATGACGACCTTGGTCGAGGTCCAAATGACCAACGTCGAGGCTAGACGAAGTTGAAACGAAGAGTTAAGGTCAAACGACCAATGGTGAGGCTAAGGAGATCAATTTAAAGCGAAGAGCCAAGGCTGAAGGCCGAGGTCGAGAAGATCAAGTTGAAGCGAAGAGCCAAGGTCAAAATTGGGCCCAAAATTATTAACGAAACGTGAATTCACAATCAAAATTTTACGGAGGCTGAGCCTAATCCTAAAAGGTGAAATATTTTCACCTTTCATACACGTACAAGTACACCATGGTCATTGTGGAAAATGACCAAGGTTGAGGTTGAAGCCCATCCTAAGCACATAAGCGCCAAAGATTTCTTGGGGTCGAAAATACATAAAAAAAAATATATATTTTTTTTAAAGAAAATTTGATATGGTGTTATTTGACTGTGAATACACATATATAATTGTTGAAGAAAACTATTTGTATGAATAAAGCTTACTAGCTAGATACGGTTCTTCTCCAACAAAAAGACAATAGAACAAAATTAAGCATATACTTCGTTATCTCCGAGTAACCATCGATATGGGTTTGTTTTATTCAAATAAATCAAATTTTGATTTAGTTGGTTATGCAGATTCTGGATATTTATTTGATCCACACAAAGTGATGTTCAGTGAAACTGACCAGCTACTTCCTCAACAACATTATACGAAAACAACACAACATGTATAGTCCAAATCAAAAAAGTATATATTAAAAAAGATAGAACAAAACATATTTCACCAAAACTTTTCTATACTCATGATCTTGAAGAAATGACAATATCACTATACAACAAATTTGTTTGAAGGATAACCTGTCAGACATAGTTACAAAAACATTACCTACCGCAACCTTTGATAACCACATATTTACAAAAGCATTACCTACCGCAAACTTTGAGAACATTTAAATGTGGTGACTTGGAGATCTAAGTGATGTTCCTATGAGGAGAGCAAATATTCTTTTAAAAGTATTAGATTATACGAAATATGTACACTTTTTCTTTTAAGGATTTTGTTCTCATTGGGTTTTTTATTAGTAAAGTTTTAACGAAACATATTTCATATATATATATATATATGTATAATGGACATCTAAAGGGTAGTATTATGAATATTAAAAAAAAAAAAAACAAACTAAATTAGATGTCTATTGTGACAACCCAAATCATTAAGGTAAATTCTCCTATTAAGTTAATTTAAGTCATTATGCATCAAAAAAGAAATTATATATATATATATTTAGATTAAGGAGGAAAGTTTTTAAATTTGGTATTTGTAGTGGTTGGTGAGACTTAGGTGGATTTAAGGAAATTTTGGAATTGGCAAGAGATGATTCATCCTTGGGGTGAAATGAATAAAATAAAATAAATAGATTTGGTGGGATGGAGTTTGAATAAAGAAGATTTTATTTTATTTTATTTTGTGGGAGAAAAATGGAAATGTGGAATTAATGGGGAGGGAAAGAAATTAGGGTTTATTTTAAACCCTTCTCAGTTTGGGTGTAGTTTAAAAAAAAAAAAAAAAAAAAAGAAAAGCTCTCCCCCTCTCTCCCTCCTCCCTTCCTTCCCGATTTCCGCCGCCGCCTCCTTCTTTTTCCGTTCTCCCTCTCCACCGCCAAGCGCTCTCCCTCTCTCCCTCTCCGTCGTCTCTCTCTCAGTTGCCGCTCGGTTCCCGGAGGTTTCACCCTCAGAATCACGCTGTCTCTCGCCCAGGGTATCACTGTCTCCCGCGGGCTCTCGCTCTCTCGCTCAACTCACGCTCTCCCGCTCTCTCACTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACGCTCTCACAATCTCGGGCTCTCGCTCTCGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTCGCCTGACCGTCAGTCGTCGGATCAGTAGTCGGATCAGTACTCCCAAGTGAGTATCTCAAACCTGAGTAGGTTAGTGGCATATTTTGGTAAATATTTGGGAATATGAATTAATTGGTAAATCTTAATAGGTGGTTGGCGATTGCTTTAGTTCGTAGGGTTGGAGTAAACTGCGAGTTTGGCCACGTTCGGGTAAGGACTCTCTCGAACGAACTTTGAGTTTACTTATGACGAGTTAGGCTTGATGAATAACTTAAGTTAGGGGAATTGTATTCCCAGTTTATTTAGGAATTTTGCAAGAGTTGCAGTGTGCTTAGCTGTATGGATCAATCCTCAGGTAAGTGATCTTACTACCTGAACCGCCTTCAGGCCATATGTTTAGTTGCCATGATGTAGTAGATTTCTAAAACCACTTATGATATAGTATGCTTGTATGAAATTTCCATGTCTTAAAGTTGTATGTGCCTGATAGTGTATAAGCTTATGCTATGAGACGTTTATGAACAATACTGTTAATGTATGAATCCATGGAATGGAATGAGTGTGAACTTGGTTGATCATGTATGATGAGTATTGGTGACTTCCCTACGTTGGTTAGATATCCATAGGAGGTTGTGTTCCTTCCGGTTCATTGGAGGTTGTGTTCCTTCGGGATCACTAGAGGATGTGTTCCTTCGGGTTCGCTAGAGGTTGTGTTCCTTTAGGTTCACTAGAGGTTGTGCTCCTTTGAGTACACTAGAGGTTTGTGTTCCTTCGGGATCACCAGAGGTAAAAGTTTCCTTCGGGGCTCTCTAGAGGTTTGTGGGCATCCATAACCAACGGTGGGGCAGGTATAACCATTCCCCTATAGAAGTATGATAGATATGCATGTCTTATGTTTGACGCACTTAAAGGACTTAAGTGCCTAGCCCGACCCCGGTAGTGGGGACACTTACTGAGTAATATAATTACTCATCCTTTCATTTTATATGTTTTTCAGATAAAGGAAGGAATGTGCAGGCGAATGACAAGAAGAATCCTTGATGGCATCATGGGACCCGTAGTAGCTTCCGCGTAGTCTAATTTTGTTTTGAGACTCGTCTCTTTATTTATTTATGTGGATTTTTCATTCATGAAGCTTCTTTTATTGATTTTATTAGGGGTACCCGAACCAAAATTTCCTTTTATTTGTTAATGCGTTATTTTCTTGAATTAATATAAGTAGAAATTTTCATGAAAAGCATTGGTCCTTCTTCGTTATTCAGCGTAGTGTCGTTTCTTTGAATTTTTGCATGCATTGAGTAATGGTCCAATTAGATTGTATAAGTCGGGTCGTTACATCTATCCTTAGTGTTCCAATGACATGTGTCTCGTAAACACACATTCCATGTTTTTCCATAGTGTGTTTTCCTATAAAATTCTATTTCTACCTTTTGTTATTTTATTTCTTTTAATTATTATATTTGTTCTATTATTTAATTATTTTAATATTATAATTTTTCGATATTCGTATACTCGTTTTTCATCATTTTACTCTTCAATTTCACGTATTTTTTTTGGTAGTATTGTTTTGCATAATTTGAACTCAGGTTTGCAATTTGTATCAACATGGTTATCTATTTTTTTTCTTTTTATTATTATTGTTAGTTTATTTCATCTTCTTCTATTTAAATTGAGAAATTTTTCCTAACAAAAATTTTCCATTACGGTTCATGTTGAAAATGATTATAAACACGTTAAACTTGCATATGAGGCATCTAGTGGGCAACAAATATGGTCTGCTTCAAATTTTGATTGTTTAATTGAAATTCGATAGTTGAAAAGTGTTTTATATAATTTAACCTTTACTTATTGATTTGGATTTGTGATTTTTCATATTTGTTTTTTTATTAGATGTATTTTCCAGTTAATTTAAAACTTTTTACTCAATTTCTCCATAATTTACTCACACTCATATGTAGAGTTTTTTACAATCCTTTTTCTTAATTTGTGCATCAATTTTCCCATTATATATATAATCCTTTGTTATCAATTTTTTTTGCTCATGAAAACTAGGGTCATATTTTTAGTATCATACTTAATATTTTTAAATATAAGAAAATAAACTAAAATATTTATAAATATAACAAAATTTCATTGTCAATCCTGAAAAGATCGCGATAGATTGCGATATTTTGCTATTATTTGTAAATAGTTTCATCCTCAACTACAAAGTAAGATTGGTTGGCCAGAAAAAATGAATTATAATGTAATTCTTCTTTATAAGTTTTGCATTTTCAATTTTTCCAAAAATCTAAAGCATGAAGATCATAAATAAACATAAGGAGGTATAATCGTACAACACATGGATGCAACATTGTAAAATTTAAACAATATAATGAGTTATGGGTATTTTGACAAAATTTAAAACCTAAGGGTGGCCCATACTTTGTACAAGGTATCATCCCACTTACCCTAAAAAAAACTAATTTTCAGTAAAGGAAACATTTATATATATAAAGGGAGAAAAACCAGAGGATTACAAGAGTTGGTAGCCAATTGTTAACTAAAAAAGATAAACTAAGTAAACATAAAATGAGGAAAGGAGGAAAGTGAATCATGAAAAAGTCCCCTGTTTCGCTCACTCCATAGGCCCCCATGAGAAGCACAAATAATGGCCAACCAAATAGTCTTCTTGGTACTAGGGATGGCAAAAAAACCTACAGGCCCCGACCTGATCGGGTTAGGGAATCCTCGGTTTAACAGGGGATAGGGGTCAAACTGGGGACATTCCCCAAGTACCTATCTCGGGACGGGGTGGGTACCCCTGCCCTGGCCCCAACCTCGACCCCCCCCCCCCCCCCCGTTTAATCCTCGACCCCACCCCATATATATATATATGAATGTAAAGATAACTGTCATCTCGCTCTCGCTCTTGTAAGTCTTGCTCTCGCTCTAGCTCTCTCTCATTACCGCTCCCTCTCTCTCAATATCACTCTCTCTCACTCCCAGTATCATCACTCTCTCAGTATCGCCTCCCTCAGTCTCGCTCTTGCTCTCTCTTGTACCTTAGTATCGTTAGCTATCACTCTCGTTCTCAATCTCGCAGTCTCACTCTCTCTCTCAGTCTCGGTATCGCTAGCCCCGTGAGGACCCGTCTCCCCAACGGGAAATCTTCGCCCCCGTCCCCGCTTAATTCCCCCATTGGGGGGAGGGGGGATCCCCACTAGCCCTTGCCCCATTGCCATCCCTACTTGGTACCACGAAAGGGGTGGCCCACCAACAAGGATGTTAATATCTCCGAAATATTATTTGGGCAAGTATAAGACCAACCAAAAGCAAGCAAAACAATGTCCCAAAATTTAGTGGCATAAGAATCGTGCATGAACAAGTGAACCAACGATTCTGCATTTGAGTGAAAGAGTCATAAAAGAGTCATAGCAAGATAAAAAGAAGTTTGAATGAAACGACAACAAAAATTTATGGATGATTAATTGAGATAAAATTGAAAAAACAACAAATATTAAAATCAATGAAATCGATTGGAAAAAAGCTTTGCGATCATAACCAGAAATAACGTTTTTTTAAATTTCATTTTGAAAAATAGCAGGATGTTTTTAGATATTTTTCTGGTTGCCCACCAAAACCGTGAAACAAACTGCTCTAGGTGGGCTGAAATAGGTTGGGCTATGGAAAAAGCCCAGGCCCAGGCCCAGGCCCAAAGACAGCACAAGATACATGGCGTGAACATTACGAATTCCGGCATCTTACTTTTTTAGCATTTTTGGTTTCCAAATCGGACGCTCATCAGCGAAACCGATCAAAACTCTCTCCCCTTCGTTTTTCCTCTTGCCATTGATCGTTCATCGGCGACTCATCTCTCCGTTACCTCTCCTCTAGTACGTTCACATTCGCATTCTAGCTTGTGTTTTTTAAATTCGAATTCTATTTTGGTTAATCGTCTTGAGATGATACTTTGGTTGTTTGCTTGCTGAGAAAGCTGAGTGACTGAAACTTTGAATTTTCATTACCTTTGCGTTTTTCTTCTCTGGATATGCATTCATTTGTTAGTGAGCTTGGTTCAAAAAAAAATATATATATATTTTTGTTCGTAAGCTTATTTGCTGTTCCGTTGATCGGAAGTTGTTGGTTACCTGCGGCCGAAGAAAGATAAACATAGCAACTTATGGAGTAGTCAGTCTGATGTTTCGTTTATTATTGATTGATTATCTTTGGTGTGATTTCTGATATTTTTTTTCTTTTCATATTGAAATTTAGTCTTATTGTTTCATGTTTGACGTAAGGGAAGTGAGGATTTGCTATTTATTTATTTACTTTTTCCTGCTGTTTTGGTGGTGGATCAGTTTGATGCACTTGGCGCCCTTAGTCATAAAGCTGTATAAATTATACTGTGAATTGGCGATTTCTTGCTGGAATTTGAGGTTTATGATTATGATACTGTAATTTTCAAGCATTCGGTTTTCTTACATATCATACAACATGCAGTTCTTCACCCCTCGATTTGGAGCCTTTAAGAGGTTGATTATACGTTGA

mRNA sequence

ATGCGCGCTAGTAGCGCGGCTCGCTTCGCTTTTGTTAGGAGTAGGTGCTTCCCCTTAGTTGGGTTGGGGGAAGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTCAAACGACCAATGGTGAGGCTAAGGAGATCAATTTAAAGCGAAGAGCCAAGGCTGAAGGCCGAGGTCGAGAAGATCAAGTTGAAGCGAAGAGCCAAGTTGCCGCTCGGTTCCCGGAGGTTTCACCCTCAGAATCACGCTGTCTCTCGCCCAGGGTATCACTGTCTCCCGCGGGCTCTCGCTCTCTCGCTCAACTCACGCTCTCCCGCTCTCTCACTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACGCTCTCACAATCTCGGGCTCTCGCTCTCGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTCGCCTGACCGTCAGTCGTCGGATCAGTAGTCGGATCAGTACTCCCAAGTGGTTGGCGATTGCTTTAGTTCGTAGGGTTGGAGTAAACTGCGAGTTTGGCCACGTTCGGGGGAATTGTATTCCCAGTTTATTTAGGAATTTTGCAAGAGTTGCAGTGTGCTTAGCTGTATGGATCAATCCTCAGGAGGTTGTGTTCCTTCCGGTTCATTGGAGGTTGTGTTCCTTCGGGATCACTAGAGGATGTGTTCCTTCGGGGGATAGGGGTCAAACTGGGGACATTCCCCAAGTACCTATCTCGGGACGGGGTGGCGAAACCGATCAAAACTCTCTCCCCTTCGTTTTTCCTCTTGCCATTGATCGTTCATCGGCGACTCATCTCTCCGTTACCTCTCCTCTATTCTTCACCCCTCGATTTGGAGCCTTTAAGAGGTTGATTATACGTTGA

Coding sequence (CDS)

ATGCGCGCTAGTAGCGCGGCTCGCTTCGCTTTTGTTAGGAGTAGGTGCTTCCCCTTAGTTGGGTTGGGGGAAGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTCAAACGACCAATGGTGAGGCTAAGGAGATCAATTTAAAGCGAAGAGCCAAGGCTGAAGGCCGAGGTCGAGAAGATCAAGTTGAAGCGAAGAGCCAAGTTGCCGCTCGGTTCCCGGAGGTTTCACCCTCAGAATCACGCTGTCTCTCGCCCAGGGTATCACTGTCTCCCGCGGGCTCTCGCTCTCTCGCTCAACTCACGCTCTCCCGCTCTCTCACTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACGCTCTCACAATCTCGGGCTCTCGCTCTCGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTCGCCTGACCGTCAGTCGTCGGATCAGTAGTCGGATCAGTACTCCCAAGTGGTTGGCGATTGCTTTAGTTCGTAGGGTTGGAGTAAACTGCGAGTTTGGCCACGTTCGGGGGAATTGTATTCCCAGTTTATTTAGGAATTTTGCAAGAGTTGCAGTGTGCTTAGCTGTATGGATCAATCCTCAGGAGGTTGTGTTCCTTCCGGTTCATTGGAGGTTGTGTTCCTTCGGGATCACTAGAGGATGTGTTCCTTCGGGGGATAGGGGTCAAACTGGGGACATTCCCCAAGTACCTATCTCGGGACGGGGTGGCGAAACCGATCAAAACTCTCTCCCCTTCGTTTTTCCTCTTGCCATTGATCGTTCATCGGCGACTCATCTCTCCGTTACCTCTCCTCTATTCTTCACCCCTCGATTTGGAGCCTTTAAGAGGTTGATTATACGTTGA

Protein sequence

MRASSAARFAFVRSRCFPLVGLGEGRGHFHREGFNPATGSPTATLLRLHPSRRPHRGQTTNGEAKEINLKRRAKAEGRGREDQVEAKSQVAARFPEVSPSESRCLSPRVSLSPAGSRSLAQLTLSRSLTLTLPRSHTRNHAPPRQDHALTISGSRSRSESRSRLRLTARLTVSRRISSRISTPKWLAIALVRRVGVNCEFGHVRGNCIPSLFRNFARVAVCLAVWINPQEVVFLPVHWRLCSFGITRGCVPSGDRGQTGDIPQVPISGRGGETDQNSLPFVFPLAIDRSSATHLSVTSPLFFTPRFGAFKRLIIR

Homology

[Close]

BLAST of Clc02G05080 vs. NCBI nr
Match: KAB1215692.1 (hypothetical protein CJ030_MR4G009216 [Morella rubra])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-11
Identity = 45/66 (68.18%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MRASSAARFAFVRSRC---------FPLVGLGEGRGHFHREGFNPATGSPTATLLRLHPS 58
          MRA+SAARFAFV               L  +G  RGHFHREGFNPATGSPTATLLRLHPS
Sbjct: 1  MRATSAARFAFVAELAAFHFVTEWVLVLSWVGR-RGHFHREGFNPATGSPTATLLRLHPS 60

[Close]

BLAST of Clc02G05080 vs. NCBI nr
Match: KAG6621652.1 (hypothetical protein I3842_Q006900 [Carya illinoinensis])

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 26 RGHFHREGFNPATGSPTATLLRLHPSRRPHRG 58
          RGHFHREGFNPATGSPTATLLRLHPSRRPHRG
Sbjct: 43 RGHFHREGFNPATGSPTATLLRLHPSRRPHRG 74

[Close]

BLAST of Clc02G05080 vs. NCBI nr
Match: KAG7529257.1 (hypothetical protein ISN45_Un97g000400 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 7  ARFAFVRSRCFPLVGLGEGRGHFHREGFNPATGSPTATLLRLHPSRRPHRG 58
          AR  +V  +  P +G G+ R   HREGFNPATGSPTATLLRLHPSRRPHRG
Sbjct: 27 ARRQWVGRKLAPYLGWGK-RNEVHREGFNPATGSPTATLLRLHPSRRPHRG 76

[Close]

BLAST of Clc02G05080 vs. NCBI nr
Match: TYG73453.1 (hypothetical protein ES288_D04G101900v1 [Gossypium darwinii])

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 25 GRGHFHREGFNPATGSPTATLLRLHPSRRPHRG 58
          GR HFHREGFNPA GSPTATLLRLHPSRRPHRG
Sbjct: 21 GRVHFHREGFNPAIGSPTATLLRLHPSRRPHRG 53

[Close]

BLAST of Clc02G05080 vs. NCBI nr
Match: PWA96871.1 (hypothetical protein CTI12_AA035380 [Artemisia annua])

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 27 GHFHREGFNPATGSPTATLLRLHPSRRPHR 57
          G+FHREGFNPATGSPTATLLRLHPSRRPHR
Sbjct: 31 GNFHREGFNPATGSPTATLLRLHPSRRPHR 60

[Close]

BLAST of Clc02G05080 vs. ExPASy TrEMBL
Match: A0A6A1VRU9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G009216 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-12
Identity = 45/66 (68.18%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MRASSAARFAFVRSRC---------FPLVGLGEGRGHFHREGFNPATGSPTATLLRLHPS 58
          MRA+SAARFAFV               L  +G  RGHFHREGFNPATGSPTATLLRLHPS
Sbjct: 1  MRATSAARFAFVAELAAFHFVTEWVLVLSWVGR-RGHFHREGFNPATGSPTATLLRLHPS 60

[Close]

BLAST of Clc02G05080 vs. ExPASy TrEMBL
Match: F6H2S2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0125g00060 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 18 PLVGLGEGRGHFHREGFNPATGSPTATLLRLHPSRRPHRG 58
          PL  L  GRGHFHREGFNPATGSPTATLLRLHPSRRPHRG
Sbjct: 35 PLCLLVGGRGHFHREGFNPATGSPTATLLRLHPSRRPHRG 74

[Close]

BLAST of Clc02G05080 vs. ExPASy TrEMBL
Match: A0A5D2CZN8 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G101900v1 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 25 GRGHFHREGFNPATGSPTATLLRLHPSRRPHRG 58
          GR HFHREGFNPA GSPTATLLRLHPSRRPHRG
Sbjct: 21 GRVHFHREGFNPAIGSPTATLLRLHPSRRPHRG 53

[Close]

BLAST of Clc02G05080 vs. ExPASy TrEMBL
Match: A0A2U1QFT8 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA035380 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 27 GHFHREGFNPATGSPTATLLRLHPSRRPHR 57
          G+FHREGFNPATGSPTATLLRLHPSRRPHR
Sbjct: 31 GNFHREGFNPATGSPTATLLRLHPSRRPHR 60

[Close]

BLAST of Clc02G05080 vs. ExPASy TrEMBL
Match: A0A0U1YIU0 (Uncharacterized protein OS=Brassica nigra OX=3710 GN=orf123 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 32  EGFNPATGSPTATLLRLHPSRRPHRGQT 60
           EGFNPA GSPTATLLRLHPSRRPHRG +
Sbjct: 95  EGFNPAAGSPTATLLRLHPSRRPHRGMS 122

The following BLAST results are available for this feature:

BLAST of Clc02G05080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1215692.1	1.3e-11	68.18	hypothetical protein CJ030_MR4G009216 [Morella rubra]	[more]
KAG6621652.1	3.5e-09	100.00	hypothetical protein I3842_Q006900 [Carya illinoinensis]	[more]
KAG7529257.1	3.9e-08	68.63	hypothetical protein ISN45_Un97g000400 [Arabidopsis thaliana x Arabidopsis areno...	[more]
TYG73453.1	5.1e-08	93.94	hypothetical protein ES288_D04G101900v1 [Gossypium darwinii]	[more]
PWA96871.1	4.3e-07	96.67	hypothetical protein CTI12_AA035380 [Artemisia annua]	[more]

BLAST of Clc02G05080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G05080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1VRU9	6.3e-12	68.18	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G009216 PE=4 SV=1	[more]
F6H2S2	6.9e-11	90.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0125g00060 PE=4 SV=...	[more]
A0A5D2CZN8	2.5e-08	93.94	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G101900v1 PE=...	[more]
A0A2U1QFT8	2.1e-07	96.67	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA035380 PE=4 SV=1	[more]
A0A0U1YIU0	1.3e-04	89.29	Uncharacterized protein OS=Brassica nigra OX=3710 GN=orf123 PE=4 SV=1	[more]

BLAST of Clc02G05080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G05080.1	Clc02G05080.1	mRNA