Clc02G02920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G02920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box protein SNE-like
Location	ClcChr02: 2558792 .. 2559568 (-)
RNA-Seq Expression	Clc02G02920
Synteny	Clc02G02920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACCACTAAGTTCAGCCGTTCCTTTCTAGTTTCTTTCTTTTCTCAAAAAGAGCCCTCTCTTCATTTTTCTCTCTCGATCCAGAAACTGAAACAATCAATCAATCAATCAATCAACAAGAACAAGAAGAAGAAACAGCTTAATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAATTTGTTTGTTTCTTTCATTCTCAAACTTTATTTGATTTGGAATCGTCTCATTGGAAAAAAAAAATTGTAGGACTCTTTTTTTCTCTTTCTTTTTCTTTTTAATAATTTTTTTTTATTAAATAAAGTAAAATATTATATTACAATCTCACTCG

mRNA sequence

AAAAAAACCACTAAGTTCAGCCGTTCCTTTCTAGTTTCTTTCTTTTCTCAAAAAGAGCCCTCTCTTCATTTTTCTCTCTCGATCCAGAAACTGAAACAATCAATCAATCAATCAATCAACAAGAACAAGAAGAAGAAACAGCTTAATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAATTTGTTTGTTTCTTTCATTCTCAAACTTTATTTGATTTGGAATCGTCTCATTGGAAAAAAAAAATTGTAGGACTCTTTTTTTCTCTTTCTTTTTCTTTTTAATAATTTTTTTTTATTAAATAAAGTAAAATATTATATTACAATCTCACTCG

Coding sequence (CDS)

ATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAA

Protein sequence

MMQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

Homology

[Close]

BLAST of Clc02G02920 vs. NCBI nr
Match: XP_022952371.1 (F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 7.6e-69
Identity = 135/159 (84.91%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. NCBI nr
Match: XP_022969281.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 134/159 (84.28%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. NCBI nr
Match: KAG7011864.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.3 bits (682), Expect = 8.4e-68
Identity = 134/159 (84.28%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. NCBI nr
Match: KAG6572228.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 132/156 (84.62%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRH+SS   SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKP 157
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Clc02G02920 vs. NCBI nr
Match: XP_022136160.1 (F-box protein SNE-like [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 116/160 (72.50%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 2   MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDS 61
           MQRNA +++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA NDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 62  LWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN--RSGLLPRVWTLQDQ 121
           LWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L   N  RS  + RV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 122 VQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Sbjct: 121 LQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-35
Identity = 88/155 (56.77%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 12  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEH 71
           E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A N DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 72  LCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSL 131
           LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R      LP++   +DQ+Q LSL
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR------LPKLLWTRDQLQ-LSL 130

Query: 132 SLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV 160
           SL+CV YYER   +G  L  A P SL FL KP+NV
Sbjct: 131 SLYCVHYYERL-YVGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Clc02G02920 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 28  DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPS--SLRPLVLA 87
           D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR +VL+
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 88  LGGYKRLYLLCLRPVLTR-----LNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDC 139
           LGG++RL+ + +RP+  R       +    P V   +DQVQ LSLSLF + +++   C
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQ-LSLSLFSIGFFQNMPC 194

[Close]

BLAST of Clc02G02920 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 10  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSL 69
           D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ L
Sbjct: 13  DAHNETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA-QDERL 72

Query: 70  WEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 129
           WE +C RH ++     + LR +VLALGG++RL+ L L P L++ N     PR    +D++
Sbjct: 73  WELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDEL 132

Query: 130 QRLSLSLFCVDYYER 136
            +L+LSL  + YYE+
Sbjct: 133 -KLTLSLLSIRYYEK 139

[Close]

BLAST of Clc02G02920 vs. ExPASy TrEMBL
Match: A0A6J1GK18 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.7e-69
Identity = 135/159 (84.91%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRH+SS P SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. ExPASy TrEMBL
Match: A0A6J1HXD0 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 134/159 (84.28%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 2   MQRNAQQEDNE-QNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 61
           MQ NA Q D + +NN+KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALA NDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 121
           SLWEHLCF H+SS P SS+RPL+LALGGYKRLY+LCLRPVL+RLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           QRLSLSLFCVDYYERN  LGGD AAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. ExPASy TrEMBL
Match: A0A6J1C339 (F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.1e-56
Identity = 116/160 (72.50%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 2   MQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDS 61
           MQRNA +++N+    K FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALA NDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 62  LWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLN--RSGLLPRVWTLQDQ 121
           LWEHLC RH SS PPS+LR +VLALGGYKRLY+LCLRP+L   N  RS  + RV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 122 VQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           +Q LSLSLF VD YER+  + GD AAAAPSLRFLCKP+NV
Sbjct: 121 LQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Clc02G02920 vs. ExPASy TrEMBL
Match: A0A5N6RCK8 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 8   QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLC 67
           Q+   +   KK KF INDH DILTEILKRLD PSL  AACVCRLWCA+A N DSLWEHLC
Sbjct: 2   QQKKAEEKEKKPKFCINDHADILTEILKRLDGPSLGVAACVCRLWCAIARN-DSLWEHLC 61

Query: 68  FRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLL-PRVWTLQDQVQRLSLS 127
           FRH++S PPSS+RP+VLALGGYKRLY++C+RPVLTRL  S L+  RVWT +D+VQ LSLS
Sbjct: 62  FRHVASPPPSSVRPVVLALGGYKRLYMVCVRPVLTRLGHSDLVRRRVWT-RDEVQ-LSLS 121

Query: 128 LFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           LFCVDYYER   LGG   A+A SL FLCKP+NV
Sbjct: 122 LFCVDYYERR--LGG---ASASSLMFLCKPVNV 146

[Close]

BLAST of Clc02G02920 vs. ExPASy TrEMBL
Match: A0A2P6S1H4 (Putative F-box domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156431 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 101/152 (66.45%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 8   QEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLC 67
           Q+++ + N +  +F INDH+DI+ E+LKRLD PSL  AACVCRLWC++A N DSLWEHLC
Sbjct: 2   QQNSPEENERLHQFCINDHIDIVVEVLKRLDGPSLGVAACVCRLWCSVARN-DSLWEHLC 61

Query: 68  FRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLSL 127
           FRH+SS PPSS+RP+VLALGGYKRLY++C+RPVL+RL+ S L+ RVWT +D+VQ LSLSL
Sbjct: 62  FRHVSSPPPSSVRPIVLALGGYKRLYMVCVRPVLSRLSDSTLVRRVWT-RDEVQ-LSLSL 121

Query: 128 FCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           FCVDYYER   LGG   A+A SL FLC P+NV
Sbjct: 122 FCVDYYERR--LGGG-DASASSLMFLCNPVNV 147

[Close]

BLAST of Clc02G02920 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-36
Identity = 88/155 (56.77%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 12  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEH 71
           E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A N DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 72  LCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSL 131
           LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R      LP++   +DQ+Q LSL
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR------LPKLLWTRDQLQ-LSL 130

Query: 132 SLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV 160
           SL+CV YYER   +G  L  A P SL FL KP+NV
Sbjct: 131 SLYCVHYYERL-YVGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Clc02G02920 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 10  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSL 69
           D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ L
Sbjct: 13  DAHNETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA-QDERL 72

Query: 70  WEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 129
           WE +C RH ++     + LR +VLALGG++RL+ L L P L++ N     PR    +D++
Sbjct: 73  WELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDEL 132

Query: 130 QRLSLSLFCVDYYER 136
            +L+LSL  + YYE+
Sbjct: 133 -KLTLSLLSIRYYEK 139

The following BLAST results are available for this feature:

BLAST of Clc02G02920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952371.1	7.6e-69	84.91	F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-li...	[more]
XP_022969281.1	4.9e-68	84.28	F-box protein SNE-like [Cucurbita maxima]	[more]
KAG7011864.1	8.4e-68	84.28	F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572228.1	2.1e-66	84.62	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136160.1	1.3e-55	72.50	F-box protein SNE-like [Momordica charantia]	[more]

BLAST of Clc02G02920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	9.7e-35	56.77	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q7XAK4	2.6e-11	39.83	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9STX3	4.9e-10	34.81	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]

BLAST of Clc02G02920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK18	3.7e-69	84.91	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1	[more]
A0A6J1HXD0	2.4e-68	84.28	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1	[more]
A0A6J1C339	6.1e-56	72.50	F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1	[more]
A0A5N6RCK8	1.8e-47	70.59	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 P...	[more]
A0A2P6S1H4	1.1e-46	66.45	Putative F-box domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

BLAST of Clc02G02920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	6.9e-36	56.77	F-box family protein	[more]
AT4G24210.1	3.5e-11	34.81	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 27..65 e-value: 3.5E-5 score: 33.2
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 28..69 e-value: 9.9E-10 score: 38.2
None	No IPR available	GENE3D	1.20.1280.50		coord: 10..115 e-value: 8.2E-12 score: 46.9
None	No IPR available	PANTHER	PTHR47750:SF1	F-BOX PROTEIN SNE	coord: 3..159
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..159
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 28..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G02920.1	Clc02G02920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding