Clc02G02160 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G02160
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CCR4-NOT transcription complex subunit 9-like isoform X1
Location	ClcChr02: 2004365 .. 2007719 (+)
RNA-Seq Expression	Clc02G02160
Synteny	Clc02G02160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAGTATAAAGGCAGAGAATATGCAGACAACGAGAGAATCAAGCTTCTTCCAAACGAATCTCCACATTTCAATTTCACTTCCTCACTTTCTTCTCTGTTTTCTCAGTTTCCAATTCTTTTCTCTCACACACAATCGCCCAAATTCCTAATCTCTACCCATTCTCCCAATCATGCCCAATCTTCCCCACTTTTTGTTCGGAGAACCGTCGTCTGCAGAACCAACCACCGCGCCGGAACTCATCACTTCTCTTCCTCCTCATAAAGACCTAACCAACCTCTCTGTCGATGAACTCATTCTCGCTCTCAACCACGCCCATACTCGTGAACGCGCTTTGCAGCTTCTTTCTCAGGTACCCTTTCCAAATGCCCATAAATTATTGAATATACCGTAATCTTTCCGTTTAAGTTTTTAGGTTTAAGGGTGGTTTAACGTGGGTTTCGATCAGGAGATCATATTGTGGACTTTTTCTCGCTATGGGGTCACAGAAAAGGAAGACAACCCATGAATTCTTAGTCCATTCCTAAAAACAAAGAGATCATTGTACACTTGACCCTGAATTTTAGGTTCAAAGTGAAATTTGCCCACTTTTTAAAACATGAGTTTTTAATTATTATTTTACTTTTTTAATTTTTTACTTTTTGCTTGCATCATTATCAGCAAAAATTACCGAAATGACCTTATTGTGCACACGTGTTAGACTATCTTCGGAATCGATCATTGCTTTTGACTCTCACTACTCTTTCTATTTCTCACTTTTAAAATGGGTGATTCGTACGAAAAACATAAAAACAAAAAAATGAATTTCAAAAGTTACTTTTTTGTGTTTTCAAAACTTGGTTTCATTTTTTAAAATATTGGTAAAAAGTATGTAACAAAACAAAGAAATTTGTAGGTGTAAGTAATGTTTATATGCCTAATTTTTAAAAATCGAATGGTTATAAAAGTCCTAAATTTTTATCTCTGCATTGGTTGTTCCAAAAATGTTGGGAAAGAATTGATTTAACATTAAAATCCAAATGTTGCATTCTATTCTTTCCCCAAGGATACAAACTGATTTTTTGGTTTTTTCTCTTCAGAGTAGGAGTATGTGTGACAATTTAGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACTCTTCTGAAGGTATGAACTCTCAATTGTGGCAAAAGCCTTTATAGAACAATGTCAATCTTCAGGCTGTGTGATTCCTTTTGGTTGTGTGTTGAAATTGTAGGAAATAATGGAAGTTTACCATTTGCTGTCCAAGCCTGACCTTACAGAAAAGGCTTCAACTAGGGTCTGTTATGCTCTTGCTCTTCTTCAGGTTATGATCTCACTTTTGGTGTCAGATATGAAGTTGAATGAACAAAGATTGTTTTGTTTGTTGGTCATTTTGCCTTGTTTTAAATTGTGTTTCTCAATTTCTCTTCTAATGCTACATGCACCTTGATCTCCATGGTTGAACTCAAAAATCAATTGTTTCCAATTTTACCTTCCTCTTACTTATGAGACTGTGTACTTATCTTCTGTAGTGTGTGGCTTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGGTAAAATCTCAGCAAAATACAATACATCTCTGACTCTGACTTTATCTGTAGTTCTTTTCCCCTCATGTTCGAGGCGTTTTATATGGGAGTTTAGGCAGTAATCTGTGGCTTTTTGAATTAGGTTGCATTGATGGTCTGAGTTTTGCTGATCTTCCAGGGATTCTGATTGATGTATATTATTTTTGCAGCTAAGATCCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGGCTCACAAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTAGTCGCTGGTTTCTTTTCTTTACATTTTGTTTTCTGTTCTGGGATCAACATCAACACTTGCTAACACATACAATGATGGAATGATTACTTTGAAACAAATTAATGAGTTCAAAGACAAAAATGACACGCGCACTCGCACACACACAAAGTTCTGTACCAAAGAAAAAAGTTATTCTTCAGTTCACAGAGATCAAAACCAAATTCTTTGTGTACGGTATGGTTTATTTTGTACCTATGAATTTCGAGAAAAGGTCAAACTGAAGATATGCAATAATTTGGCCTACTCTTCTTGCAGGTTGATGACAACGAAGTTATTTACTTCCTCCTCAAAACCGAAATAGTTCCATACTGTCTGCGATGCATGGATGTAGGGAAAGGCTTGTCAAAAACGGTAAGTACCGCAGGACGAGATCGTTAACCGAGTTTCTGATATTGCTTTCTCAATGATATCAAGCACCTTTGTTTATTTTATTACAAGGCTGTCACTCATTGTCCTAAGATCATTCAGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGCTGTATAATAGCTGATCGATTTTTCGCGATAACTCATGCCTTGGAAACAATGATGGAAAGACTGTCGGAAGAACCCTCACAACGGCTGCTAAAACATATTGTTTGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGTTAGCTAAAAATTCCTCTGAAGGCTTTAAATACTTCATAATTTGATTGGTTTTACCATTACCCTGTGTACCAAACCATTGATTTTGTGCTTGGAATTATCAATAAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGGGCCTTTACTGACCTCCTTCGTGTAAGTTTTACAACAACAACGAACTTGTATTGCTATTGCTATTTGTCATCGCTAATTCCCTTGATAATTTCTCAGAAAACAGAACTTGTATTGTTAACTATCAATCTGAGTGCCTTTTTATATGTTAGTGGTTGTGTAGTTCTATATTCATTCCCATTATTCAAGTTGACAAAAAAACACTTTAAAAAGTTTCTTCAAGTGGTTTTTTGTTCATGTCCTCATAGTATAGTTGCAATTATAGACATAAAAAATCTGAAGTTTATGCAATTGTTACTGTCTTACTTGCAGGATGATCCAACTGTCATGAGCTCGTTCAAGCAGTTGCTTCGCAATGTACACGAGAATAGGTTACAAGACGATGAAATCGTACAAGGCAATCCCAAAACAGGCTGAAGTTATATGCAAACTTTGCCAATTCTACTGCACAGGATTATGTTACATATACATAGCTCTTAACAATGAGTCGGTTCTTCCATCTTTCACACATCTCTTTATTATGCTTGTAGATCACAAGAGTCACTATAAGGGGCCAAATGGTAAGTACATGTTGTAATTTGAACTACTTGAATCACAGTGCTAGGCTTTTTTCTTTTTTTCC

mRNA sequence

TGACAGTATAAAGGCAGAGAATATGCAGACAACGAGAGAATCAAGCTTCTTCCAAACGAATCTCCACATTTCAATTTCACTTCCTCACTTTCTTCTCTGTTTTCTCAGTTTCCAATTCTTTTCTCTCACACACAATCGCCCAAATTCCTAATCTCTACCCATTCTCCCAATCATGCCCAATCTTCCCCACTTTTTGTTCGGAGAACCGTCGTCTGCAGAACCAACCACCGCGCCGGAACTCATCACTTCTCTTCCTCCTCATAAAGACCTAACCAACCTCTCTGTCGATGAACTCATTCTCGCTCTCAACCACGCCCATACTCGTGAACGCGCTTTGCAGCTTCTTTCTCAGAGTAGGAGTATGTGTGACAATTTAGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACTCTTCTGAAGGAAATAATGGAAGTTTACCATTTGCTGTCCAAGCCTGACCTTACAGAAAAGGCTTCAACTAGGGTCTGTTATGCTCTTGCTCTTCTTCAGTGTGTGGCTTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGCTAAGATCCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGGCTCACAAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTTGATGACAACGAAGTTATTTACTTCCTCCTCAAAACCGAAATAGTTCCATACTGTCTGCGATGCATGGATGTAGGGAAAGGCTTGTCAAAAACGGCTGTCACTCATTGTCCTAAGATCATTCAGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGCTGTATAATAGCTGATCGATTTTTCGCGATAACTCATGCCTTGGAAACAATGATGGAAAGACTGTCGGAAGAACCCTCACAACGGCTGCTAAAACATATTGTTTGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGGGCCTTTACTGACCTCCTTCGTGATGATCCAACTGTCATGAGCTCGTTCAAGCAGTTGCTTCGCAATGTACACGAGAATAGGTTACAAGACGATGAAATCGTACAAGGCAATCCCAAAACAGGCTGAAGTTATATGCAAACTTTGCCAATTCTACTGCACAGGATTATGTTACATATACATAGCTCTTAACAATGAGTCGGTTCTTCCATCTTTCACACATCTCTTTATTATGCTTGTAGATCACAAGAGTCACTATAAGGGGCCAAATGGTAAGTACATGTTGTAATTTGAACTACTTGAATCACAGTGCTAGGCTTTTTTCTTTTTTTCC

Coding sequence (CDS)

ATGCCCAATCTTCCCCACTTTTTGTTCGGAGAACCGTCGTCTGCAGAACCAACCACCGCGCCGGAACTCATCACTTCTCTTCCTCCTCATAAAGACCTAACCAACCTCTCTGTCGATGAACTCATTCTCGCTCTCAACCACGCCCATACTCGTGAACGCGCTTTGCAGCTTCTTTCTCAGAGTAGGAGTATGTGTGACAATTTAGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACTCTTCTGAAGGAAATAATGGAAGTTTACCATTTGCTGTCCAAGCCTGACCTTACAGAAAAGGCTTCAACTAGGGTCTGTTATGCTCTTGCTCTTCTTCAGTGTGTGGCTTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGCTAAGATCCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGGCTCACAAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTTGATGACAACGAAGTTATTTACTTCCTCCTCAAAACCGAAATAGTTCCATACTGTCTGCGATGCATGGATGTAGGGAAAGGCTTGTCAAAAACGGCTGTCACTCATTGTCCTAAGATCATTCAGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGCTGTATAATAGCTGATCGATTTTTCGCGATAACTCATGCCTTGGAAACAATGATGGAAAGACTGTCGGAAGAACCCTCACAACGGCTGCTAAAACATATTGTTTGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGGGCCTTTACTGACCTCCTTCGTGATGATCCAACTGTCATGAGCTCGTTCAAGCAGTTGCTTCGCAATGTACACGAGAATAGGTTACAAGACGATGAAATCGTACAAGGCAATCCCAAAACAGGCTGA

Protein sequence

MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQDDEIVQGNPKTG

Homology

[Close]

BLAST of Clc02G02160 vs. NCBI nr
Match: XP_038888595.1 (cell differentiation protein rcd1 isoform X2 [Benincasa hispida])

HSP 1 Score: 573.5 bits (1477), Expect = 1.1e-159
Identity = 293/327 (89.60%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  LFGE SSAEPTTAPE + S PPH DL+N+SV ELILALNHAHTRERALQLLSQ
Sbjct: 1   MANLPDSLFGESSSAEPTTAPEPVISHPPHTDLSNVSVHELILALNHAHTRERALQLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVC+ALALLQCVASHP
Sbjct: 61  NRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCHALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETR+PFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRMPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT          VATFIVQKILMNEEGLRYCCIIADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKT----------VATFIVQKILMNEEGLRYCCIIADRFFAITRALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMMERLSEEPSQRLLKHIV CYL LSESPRACLGLGRLLPRMLND AFTDLLRDDPTVMS
Sbjct: 241 TMMERLSEEPSQRLLKHIVRCYLKLSESPRACLGLGRLLPRMLNDSAFTDLLRDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKTG 328
           SFKQLLRNVHENRL+D+E  QGNPKTG
Sbjct: 301 SFKQLLRNVHENRLRDNESKQGNPKTG 317

[Close]

BLAST of Clc02G02160 vs. NCBI nr
Match: XP_038888594.1 (cell differentiation protein rcd1 isoform X1 [Benincasa hispida])

HSP 1 Score: 565.8 bits (1457), Expect = 2.3e-157
Identity = 293/336 (87.20%), Postives = 301/336 (89.58%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLS- 60
           M NLP  LFGE SSAEPTTAPE + S PPH DL+N+SV ELILALNHAHTRERALQLLS 
Sbjct: 1   MANLPDSLFGESSSAEPTTAPEPVISHPPHTDLSNVSVHELILALNHAHTRERALQLLSQ 60

Query: 61  --------QSRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALA 120
                   Q+RSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVC+ALA
Sbjct: 61  CRFFVFSLQNRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCHALA 120

Query: 121 LLQCVASHPETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVI 180
           LLQCVASHPETR+PFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVI
Sbjct: 121 LLQCVASHPETRMPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVI 180

Query: 181 YFLLKTEIVPYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADR 240
           YFLLKTEIVPYCLRCMDVGKGLSKT          VATFIVQKILMNEEGLRYCCIIADR
Sbjct: 181 YFLLKTEIVPYCLRCMDVGKGLSKT----------VATFIVQKILMNEEGLRYCCIIADR 240

Query: 241 FFAITHALETMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDL 300
           FFAIT ALETMMERLSEEPSQRLLKHIV CYL LSESPRACLGLGRLLPRMLND AFTDL
Sbjct: 241 FFAITRALETMMERLSEEPSQRLLKHIVRCYLKLSESPRACLGLGRLLPRMLNDSAFTDL 300

Query: 301 LRDDPTVMSSFKQLLRNVHENRLQDDEIVQGNPKTG 328
           LRDDPTVMSSFKQLLRNVHENRL+D+E  QGNPKTG
Sbjct: 301 LRDDPTVMSSFKQLLRNVHENRLRDNESKQGNPKTG 326

[Close]

BLAST of Clc02G02160 vs. NCBI nr
Match: TYK07119.1 (cell differentiation protein rcd1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 3.4e-148
Identity = 276/314 (87.90%), Postives = 285/314 (90.76%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  LFGEP++A    APE I S PPH DLTN+ V ELILALNHA TRERAL LLSQ
Sbjct: 1   MANLPDSLFGEPTTA---PAPEPIASHPPHTDLTNVPVHELILALNHARTRERALHLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
            RSM DNLAVLIWHSFGTMFTLLKEIM+VYHLLSKP+LTEKASTRVC ALALLQCVASHP
Sbjct: 61  KRSMFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKA+IPLYLYPFLNTTIKEKPHE LRLT LGVIGALVKV+D EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAEIPLYLYPFLNTTIKEKPHECLRLTCLGVIGALVKVNDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT+VTH PKIIQVATFIVQKILMNEEGLRYCCIIADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKTSVTHYPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITRALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME LSEEPSQRLLKHIV CYLMLSESPRACLGLGRLLPRML+  AFTDLL DDPTVMS
Sbjct: 241 TMMETLSEEPSQRLLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMS 300

Query: 301 SFKQLLRNVHENRL 315
           SFKQLLR VHENRL
Sbjct: 301 SFKQLLRKVHENRL 311

[Close]

BLAST of Clc02G02160 vs. NCBI nr
Match: KAG6572285.1 (CCR4-NOT transcription complex subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 534.6 bits (1376), Expect = 5.8e-148
Identity = 270/327 (82.57%), Postives = 295/327 (90.21%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M  LP  LFGEPS+AE TTAP+  TS PP+ DL  +S+++LILAL++AHTRERALQLLSQ
Sbjct: 1   MATLPDSLFGEPSAAERTTAPKSNTSHPPNSDLNKVSIEKLILALHNAHTRERALQLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RS  D+LAVLIWHSFGTMFTLLKEIME+Y  LSKPDLTE+AS RVC ALALLQCVASHP
Sbjct: 61  NRSRSDDLAVLIWHSFGTMFTLLKEIMEIYPSLSKPDLTERASIRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKTAVTH   I QV+TFI+QKILM+EEGLRYCC++ADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKTAVTHNLNITQVSTFILQKILMDEEGLRYCCLVADRFFAITSALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME++SEEPSQRLLKHIV CYL LSESPRAC GL +LLPRMLND AFTDLLRDDPTVMS
Sbjct: 241 TMMEKISEEPSQRLLKHIVRCYLKLSESPRACPGLAKLLPRMLNDSAFTDLLRDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKTG 328
           SF+QLLRNVHENRL+++E   G PKTG
Sbjct: 301 SFQQLLRNVHENRLRENEDEYGTPKTG 327

[Close]

BLAST of Clc02G02160 vs. NCBI nr
Match: KAG7011901.1 (CCR4-NOT transcription complex subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 533.1 bits (1372), Expect = 1.7e-147
Identity = 269/327 (82.26%), Postives = 295/327 (90.21%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M  LP  LFGEPS+AE TTAP+  TS PP+ DL  +S+++LILAL++AHTRERALQLLSQ
Sbjct: 1   MATLPDSLFGEPSAAERTTAPKSNTSHPPNSDLNKVSIEKLILALHNAHTRERALQLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RS  D+LAVLIWHSFGTMFTLLKEIME+Y  LSKPDLTE+AS RVC ALALLQCVASHP
Sbjct: 61  NRSRSDDLAVLIWHSFGTMFTLLKEIMEIYPSLSKPDLTERASIRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKTAVTH   I QV+TFI+QKILM+EEGLRYCC++ADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKTAVTHNLNITQVSTFILQKILMDEEGLRYCCLVADRFFAITSALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME++SEEPSQRLLKHIV CYL LSESPRAC GL +LLPRMLND AFTDLLRDDPTVMS
Sbjct: 241 TMMEKISEEPSQRLLKHIVRCYLKLSESPRACPGLAKLLPRMLNDSAFTDLLRDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKTG 328
           SF+QLLRNVHENRL+++E   G PK+G
Sbjct: 301 SFQQLLRNVHENRLRENEDEYGTPKSG 327

[Close]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot
Match: Q92600 (CCR4-NOT transcription complex subunit 9 OS=Homo sapiens OX=9606 GN=CNOT9 PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-70
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 23  LITSLPPHKDLTNLSVDEL---ILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTM 82
           L T+ P    L  +  +++   I  L+   TRE AL  LS+ R    +LA ++WHSFGT+
Sbjct: 4   LATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTI 63

Query: 83  FTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFL 142
             LL+EI+ +Y  ++ P LT   S RVC ALALLQCVASHPETR  F+ A IPL+LYPFL
Sbjct: 64  AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFL 123

Query: 143 NTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVT 202
           +T  K +P EYLRLTSLGVIGALVK D+ EVI FLL TEI+P CLR M+ G  LSKT   
Sbjct: 124 HTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT--- 183

Query: 203 HCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIV 262
                  VATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLKH+V
Sbjct: 184 -------VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 243

Query: 263 CCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQD 317
            CYL LS++PRA   L + LP  L D  F  +L+DD T      QL++N+ E ++ D
Sbjct: 244 RCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTD 290

[Close]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot
Match: Q5R6Z6 (CCR4-NOT transcription complex subunit 9 OS=Pongo abelii OX=9601 GN=CNOT9 PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-70
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 23  LITSLPPHKDLTNLSVDEL---ILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTM 82
           L T+ P    L  +  +++   I  L+   TRE AL  LS+ R    +LA ++WHSFGT+
Sbjct: 4   LATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTI 63

Query: 83  FTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFL 142
             LL+EI+ +Y  ++ P LT   S RVC ALALLQCVASHPETR  F+ A IPL+LYPFL
Sbjct: 64  AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFL 123

Query: 143 NTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVT 202
           +T  K +P EYLRLTSLGVIGALVK D+ EVI FLL TEI+P CLR M+ G  LSKT   
Sbjct: 124 HTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT--- 183

Query: 203 HCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIV 262
                  VATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLKH+V
Sbjct: 184 -------VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 243

Query: 263 CCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQD 317
            CYL LS++PRA   L + LP  L D  F  +L+DD T      QL++N+ E ++ D
Sbjct: 244 RCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTD 290

[Close]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot
Match: A7MB47 (CCR4-NOT transcription complex subunit 9 OS=Bos taurus OX=9913 GN=CNOT9 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-70
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 23  LITSLPPHKDLTNLSVDEL---ILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTM 82
           L T+ P    L  +  +++   I  L+   TRE AL  LS+ R    +LA ++WHSFGT+
Sbjct: 4   LATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTI 63

Query: 83  FTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFL 142
             LL+EI+ +Y  ++ P LT   S RVC ALALLQCVASHPETR  F+ A IPL+LYPFL
Sbjct: 64  AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFL 123

Query: 143 NTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVT 202
           +T  K +P EYLRLTSLGVIGALVK D+ EVI FLL TEI+P CLR M+ G  LSKT   
Sbjct: 124 HTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT--- 183

Query: 203 HCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIV 262
                  VATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLKH+V
Sbjct: 184 -------VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 243

Query: 263 CCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQD 317
            CYL LS++PRA   L + LP  L D  F  +L+DD T      QL++N+ E ++ D
Sbjct: 244 RCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTD 290

[Close]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot
Match: Q4R347 (CCR4-NOT transcription complex subunit 9 OS=Macaca fascicularis OX=9541 GN=CNOT9 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-70
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 23  LITSLPPHKDLTNLSVDEL---ILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTM 82
           L T+ P    L  +  +++   I  L+   TRE AL  LS+ R    +LA ++WHSFGT+
Sbjct: 4   LATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTI 63

Query: 83  FTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFL 142
             LL+EI+ +Y  ++ P LT   S RVC ALALLQCVASHPETR  F+ A IPL+LYPFL
Sbjct: 64  AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFL 123

Query: 143 NTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVT 202
           +T  K +P EYLRLTSLGVIGALVK D+ EVI FLL TEI+P CLR M+ G  LSKT   
Sbjct: 124 HTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT--- 183

Query: 203 HCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIV 262
                  VATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLKH+V
Sbjct: 184 -------VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 243

Query: 263 CCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQD 317
            CYL LS++PRA   L + LP  L D  F  +L+DD T      QL++N+ E ++ D
Sbjct: 244 RCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTD 290

[Close]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot
Match: Q9JKY0 (CCR4-NOT transcription complex subunit 9 OS=Mus musculus OX=10090 GN=Cnot9 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-70
Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 0


Query: 23  LITSLPPHKDLTNLSVDEL---ILALNHAHTRERALQLLSQSRSMCDNLAVLIWHSFGTM 82
           L T+ P    L  +  +++   I  L+   TRE AL  LS+ R    +LA ++WHSFGT+
Sbjct: 4   LATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTI 63

Query: 83  FTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHPETRVPFMKAKIPLYLYPFL 142
             LL+EI+ +Y  ++ P LT   S RVC ALALLQCVASHPETR  F+ A IPL+LYPFL
Sbjct: 64  AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFL 123

Query: 143 NTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVT 202
           +T  K +P EYLRLTSLGVIGALVK D+ EVI FLL TEI+P CLR M+ G  LSKT   
Sbjct: 124 HTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT--- 183

Query: 203 HCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIV 262
                  VATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLKH+V
Sbjct: 184 -------VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVV 243

Query: 263 CCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMSSFKQLLRNVHENRLQD 317
            CYL LS++PRA   L + LP  L D  F  +L+DD T      QL++N+ E ++ D
Sbjct: 244 RCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTD 290

[Close]

BLAST of Clc02G02160 vs. ExPASy TrEMBL
Match: A0A5D3C9W8 (Cell differentiation protein rcd1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004400 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.6e-148
Identity = 276/314 (87.90%), Postives = 285/314 (90.76%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  LFGEP++A    APE I S PPH DLTN+ V ELILALNHA TRERAL LLSQ
Sbjct: 1   MANLPDSLFGEPTTA---PAPEPIASHPPHTDLTNVPVHELILALNHARTRERALHLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
            RSM DNLAVLIWHSFGTMFTLLKEIM+VYHLLSKP+LTEKASTRVC ALALLQCVASHP
Sbjct: 61  KRSMFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKA+IPLYLYPFLNTTIKEKPHE LRLT LGVIGALVKV+D EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAEIPLYLYPFLNTTIKEKPHECLRLTCLGVIGALVKVNDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT+VTH PKIIQVATFIVQKILMNEEGLRYCCIIADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKTSVTHYPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITRALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME LSEEPSQRLLKHIV CYLMLSESPRACLGLGRLLPRML+  AFTDLL DDPTVMS
Sbjct: 241 TMMETLSEEPSQRLLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMS 300

Query: 301 SFKQLLRNVHENRL 315
           SFKQLLR VHENRL
Sbjct: 301 SFKQLLRKVHENRL 311

[Close]

BLAST of Clc02G02160 vs. ExPASy TrEMBL
Match: A0A0A0K3J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041980 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 8.4e-145
Identity = 279/327 (85.32%), Postives = 284/327 (86.85%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP FLF     AEPTTA E     PP  DLTN+SVDELILALNHA TRERAL LLSQ
Sbjct: 1   MANLPVFLF-----AEPTTALE---PNPPLTDLTNVSVDELILALNHARTRERALHLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RSM DNLAVLIWHSFGTMFTLLKEIM+VYH+LSKPDLTEK STRVC ALALLQCVASHP
Sbjct: 61  NRSMFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKDSTRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT          VATFIVQKILMNEEGLRYCCIIADRFFAITHALE
Sbjct: 181 PYCLRCMDVGKGLSKT----------VATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMMERLSEEPSQRLLKHI  CYLMLSESPRACLGLGRLLPRMLND AFTDLL DDPTVMS
Sbjct: 241 TMMERLSEEPSQRLLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKTG 328
           SFKQLLR VH    +DD   QGNPKTG
Sbjct: 301 SFKQLLRKVH----RDDGNKQGNPKTG 305

[Close]

BLAST of Clc02G02160 vs. ExPASy TrEMBL
Match: A0A1S3C1N6 (cell differentiation protein rcd1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495613 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.0e-142
Identity = 270/314 (85.99%), Postives = 278/314 (88.54%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  LFGEP++A    APE I S PPH DLTN+ VDELILALNHA TRERAL LLSQ
Sbjct: 1   MANLPDSLFGEPTTA---PAPEPIASHPPHTDLTNVPVDELILALNHARTRERALHLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
            RSM DNLAVLIWHSFGTMFTLLKEIM+VYHLLSKP+LTEKASTRVC ALALLQCVASHP
Sbjct: 61  KRSMFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKA+IPLYLYPFLNTTIKEKPHE LRLTSLGVIGALVKV+D EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAEIPLYLYPFLNTTIKEKPHECLRLTSLGVIGALVKVNDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT          VATFIVQKILMNEEGLRYCCIIADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKT----------VATFIVQKILMNEEGLRYCCIIADRFFAITRALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME LSEEPSQRLLKHIV CYLMLSESPRACLGLGRLLPRML+  AFTDLL DDPTVMS
Sbjct: 241 TMMETLSEEPSQRLLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMS 300

Query: 301 SFKQLLRNVHENRL 315
           SFKQLLR VHENRL
Sbjct: 301 SFKQLLRKVHENRL 301

[Close]

BLAST of Clc02G02160 vs. ExPASy TrEMBL
Match: A0A6J1GLF6 (CCR4-NOT transcription complex subunit 9-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111455057 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.8e-142
Identity = 263/326 (80.67%), Postives = 288/326 (88.34%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M  LP  LFGEPS+AE TTAP+  TS PP+ DL  +S+++LILAL++AHTRERALQLLSQ
Sbjct: 1   MATLPDSLFGEPSAAERTTAPKSNTSHPPNSDLNKVSIEKLILALHNAHTRERALQLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RS  D+LAVLIWHSFGTMFTLLKEIME+Y  LSKPDLTE+AS RVC ALALLQCVASHP
Sbjct: 61  NRSRSDDLAVLIWHSFGTMFTLLKEIMEIYPSLSKPDLTERASIRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT          V+TFI+QKILM+EEGLRYCC++ADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKT----------VSTFILQKILMDEEGLRYCCLVADRFFAITSALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME++SEEPSQRLLKHIV CYL LSESPRAC GL +LLPRMLND AFTDLLRDDPTVMS
Sbjct: 241 TMMEKISEEPSQRLLKHIVRCYLKLSESPRACPGLAKLLPRMLNDSAFTDLLRDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKT 327
           SF+QLLRNVHENRL+++E   G PKT
Sbjct: 301 SFQQLLRNVHENRLRENEDEYGTPKT 316

[Close]

BLAST of Clc02G02160 vs. ExPASy TrEMBL
Match: A0A6J1GK58 (CCR4-NOT transcription complex subunit 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455057 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.8e-142
Identity = 263/326 (80.67%), Postives = 288/326 (88.34%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M  LP  LFGEPS+AE TTAP+  TS PP+ DL  +S+++LILAL++AHTRERALQLLSQ
Sbjct: 1   MATLPDSLFGEPSAAERTTAPKSNTSHPPNSDLNKVSIEKLILALHNAHTRERALQLLSQ 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
           +RS  D+LAVLIWHSFGTMFTLLKEIME+Y  LSKPDLTE+AS RVC ALALLQCVASHP
Sbjct: 61  NRSRSDDLAVLIWHSFGTMFTLLKEIMEIYPSLSKPDLTERASIRVCNALALLQCVASHP 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDD EVIYFLLKTEIV
Sbjct: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           PYCLRCMDVGKGLSKT          V+TFI+QKILM+EEGLRYCC++ADRFFAIT ALE
Sbjct: 181 PYCLRCMDVGKGLSKT----------VSTFILQKILMDEEGLRYCCLVADRFFAITSALE 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
           TMME++SEEPSQRLLKHIV CYL LSESPRAC GL +LLPRMLND AFTDLLRDDPTVMS
Sbjct: 241 TMMEKISEEPSQRLLKHIVRCYLKLSESPRACPGLAKLLPRMLNDSAFTDLLRDDPTVMS 300

Query: 301 SFKQLLRNVHENRLQDDEIVQGNPKT 327
           SF+QLLRNVHENRL+++E   G PKT
Sbjct: 301 SFQQLLRNVHENRLRENEDEYGTPKT 316

[Close]

BLAST of Clc02G02160 vs. TAIR 10
Match: AT3G20800.1 (Cell differentiation, Rcd1-like protein )

HSP 1 Score: 308.1 bits (788), Expect = 8.2e-84
Identity = 165/314 (52.55%), Postives = 213/314 (67.83%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  L        P+T+ +  T  P +KD    S ++L+L L++   RE AL  LS+
Sbjct: 1   MANLPSSLSMGTPFGGPSTSAQNPTGAPANKDRNLASAEQLVLDLSNPELRENALLELSK 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
            R +  +LA L+W+SFGT+  LL+EI+ +Y +L+ P+LT   S RVC +LALLQCVASH 
Sbjct: 61  KRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVASHS 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           +TR+ F+KA IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL TEI+
Sbjct: 121 DTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEII 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           P CLR M++G  LSKT          VATFIVQKIL+++ G+ Y C  A+RFFA+   L 
Sbjct: 181 PLCLRTMEMGSELSKT----------VATFIVQKILLDDVGMDYICTTAERFFAVGRVLG 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
            M++ L E+PS RLLKHI+ CYL LS++PRAC  L   LP  L D +F++ LR+DPT   
Sbjct: 241 NMVQSLVEQPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARR 300

Query: 301 SFKQLLRNVHENRL 315
             +QL+ NV   R+
Sbjct: 301 WLQQLVHNVGVGRV 304

[Close]

BLAST of Clc02G02160 vs. TAIR 10
Match: AT5G12980.1 (Cell differentiation, Rcd1-like protein )

HSP 1 Score: 289.3 bits (739), Expect = 3.9e-78
Identity = 163/310 (52.58%), Postives = 204/310 (65.81%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSSAEPTTAPELITSLPPHKDLTNLSVDELILALNHAHTRERALQLLSQ 60
           M NLP  L  +  +    ++P    S   + D    S ++LIL L++   RE AL  LS+
Sbjct: 1   MANLPPPLSMKSVALSGASSP----SSSSNNDRKLSSAEQLILDLSNPELRENALHELSK 60

Query: 61  SRSMCDNLAVLIWHSFGTMFTLLKEIMEVYHLLSKPDLTEKASTRVCYALALLQCVASHP 120
            R +  +LA L+WHS GT+  LL+EI+ VY  LS P +T   S RVC ALALLQCVASH 
Sbjct: 61  KREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHT 120

Query: 121 ETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDNEVIYFLLKTEIV 180
           +TR+ F+KA +PLYLY FLNT+ K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEIV
Sbjct: 121 DTRMLFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIV 180

Query: 181 PYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYCCIIADRFFAITHALE 240
           P CLR M+ G  LSKT          VATFIVQK+L+++ GL Y C  A+RFFA+   L 
Sbjct: 181 PLCLRTMENGSELSKT----------VATFIVQKVLLDDVGLEYMCTTAERFFALGRVLG 240

Query: 241 TMMERLSEEPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRMLNDRAFTDLLRDDPTVMS 300
            M+  L+E PS RLLKHI+ CYL L+++PRAC  LG  LP +L D  F+  L DDP  M 
Sbjct: 241 NMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQ 296

Query: 301 SFKQLLRNVH 311
             +QLL NV+
Sbjct: 301 WLQQLLHNVN 296

[Close]

BLAST of Clc02G02160 vs. TAIR 10
Match: AT2G32550.1 (Cell differentiation, Rcd1-like protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-34
Identity = 99/326 (30.37%), Postives = 168/326 (51.53%), Query Frame = 0


Query: 1   MPNLPHFLFGEPSS---AEPTTAPELITSLPPHKDLTNLSVDELILA------LNHAHTR 60
           M NLP  L+ + S      P+ A    ++ PP   +      E+I+          ++  
Sbjct: 5   MVNLPDSLYEDYSKLKLTSPSNASSSSSAPPPRLSVVAHPTVEMIIQWVCDIHKPKSYMS 64

Query: 61  ERALQLLSQSRSMCDNLAVLIWHSFGTMFTLLKEIMEVY-HLLSKPDLT----EKASTRV 120
           + AL  L+  R+  + L  L+W S  T++ +L+E+ E Y HL     L          RV
Sbjct: 65  DFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHISLRLFPHPLNPLRV 124

Query: 121 CYALALLQCVASHPETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKV- 180
                L Q +A HP+T   F++AK+P Y YP ++T + +K  E +RL +LGVI  ++K  
Sbjct: 125 YNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSDECMRLAALGVIAHMLKAS 184

Query: 181 DDNEVIYFLLKTEIVPYCLRCMDVGKGLSKTAVTHCPKIIQVATFIVQKILMNEEGLRYC 240
           +D  V  +L+++ +V +C++ ++ G   +K          +VA +I+ KI+  ++GL YC
Sbjct: 185 EDGAVNRYLMESGVVGFCVKPIEFGSTETK----------KVALYILDKIMSTDQGLYYC 244

Query: 241 CIIADRFFAITHALETMMERLSE--EPSQRLLKHIVCCYLMLSESPRACLGLGRLLPRML 300
           C++ADRF+ I   L+ ++  LS    P   L   +  CY+ LS++ RA  G+ R  P +L
Sbjct: 245 CVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGIRRYTPFLL 304

Query: 301 NDRAFTDLLRDDPTVMSSFKQLLRNV 310
            D  F+ L  +DP   ++  QLL+N+
Sbjct: 305 FDGTFSRLYAEDPVAANNRIQLLQNL 320

The following BLAST results are available for this feature:

BLAST of Clc02G02160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888595.1	1.1e-159	89.60	cell differentiation protein rcd1 isoform X2 [Benincasa hispida]	[more]
XP_038888594.1	2.3e-157	87.20	cell differentiation protein rcd1 isoform X1 [Benincasa hispida]	[more]
TYK07119.1	3.4e-148	87.90	cell differentiation protein rcd1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAG6572285.1	5.8e-148	82.57	CCR4-NOT transcription complex subunit 9, partial [Cucurbita argyrosperma subsp....	[more]
KAG7011901.1	1.7e-147	82.26	CCR4-NOT transcription complex subunit 9 [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Clc02G02160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q92600	1.3e-70	50.17	CCR4-NOT transcription complex subunit 9 OS=Homo sapiens OX=9606 GN=CNOT9 PE=1 S...	[more]
Q5R6Z6	1.3e-70	50.17	CCR4-NOT transcription complex subunit 9 OS=Pongo abelii OX=9601 GN=CNOT9 PE=2 S...	[more]
A7MB47	1.7e-70	50.17	CCR4-NOT transcription complex subunit 9 OS=Bos taurus OX=9913 GN=CNOT9 PE=2 SV=...	[more]
Q4R347	1.7e-70	50.17	CCR4-NOT transcription complex subunit 9 OS=Macaca fascicularis OX=9541 GN=CNOT9...	[more]
Q9JKY0	1.7e-70	50.17	CCR4-NOT transcription complex subunit 9 OS=Mus musculus OX=10090 GN=Cnot9 PE=1 ...	[more]

BLAST of Clc02G02160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9W8	1.6e-148	87.90	Cell differentiation protein rcd1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0K3J1	8.4e-145	85.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041980 PE=4 SV=1	[more]
A0A1S3C1N6	1.0e-142	85.99	cell differentiation protein rcd1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1GLF6	1.8e-142	80.67	CCR4-NOT transcription complex subunit 9-like isoform X3 OS=Cucurbita moschata O...	[more]
A0A6J1GK58	1.8e-142	80.67	CCR4-NOT transcription complex subunit 9-like isoform X1 OS=Cucurbita moschata O...	[more]

BLAST of Clc02G02160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20800.1	8.2e-84	52.55	Cell differentiation, Rcd1-like protein	[more]
AT5G12980.1	3.9e-78	52.58	Cell differentiation, Rcd1-like protein	[more]
AT2G32550.1	1.2e-34	30.37	Cell differentiation, Rcd1-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 35..314 e-value: 5.4E-114 score: 381.8
None	No IPR available	PFAM	PF04078	Rcd1	coord: 41..309 e-value: 4.7E-101 score: 337.4
None	No IPR available	PANTHER	PTHR12262	UNCHARACTERIZED	coord: 14..311
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 49..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G02160.2	Clc02G02160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0000932	P-body