Clc02G01680 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G01680
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 1579775 .. 1580774 (+)
RNA-Seq Expression	Clc02G01680
Synteny	Clc02G01680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTTTTGCTTTTCGCGATTATGTCATTTTTTTCAAAGTTCGGTTCTTGTTGGCGGTCGACGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCCGAGGAGGTCAAGGAGCAGAGCGTCGAGATGCTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGGCGTTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGTTCGCCGGTGAAGAAATCCGGCAAAAAGAAGCCGGAGAAGAAAACGTCCGGCCGGCAAGGCAGGCTGAAGACCAAGTCGTCTAGTTATAATGGCAGAGATAATTACTGGTAATTACACTAATTAGCTTGTTTCGTTTGCAATTATTGTTTCTAAATTCGGAATCTTTTGAATGATTTTGAAAGTTCCATCCTCAGCCATTCACACTGTGTTTCTTGGTTTTCAATTTTGGATTTTTAATGATTATTCAGCTAAAATCAGTGGCTAAAGTCAGATAATTATCCATAATTTTGTTAAATTTGTTTAATAAATAATCGCGTTTGGCTTTATTTGTTATTTTCAAAGTGTTATGAAAATCACTATTTCAAATAATGGTCGTTTTTTTCAAGTGAAAATCACATTCTAGTTTTCTTTTTTAGGAAGTTTTTCAAAACAATTTAATAACAATAGGTCTTCTTATTTTAAATTTTAAAATGGAAAATGAAGTGATTATCTTTGTGGTTTAATCATACTATCTCAATTTTCATCCAAAATTATAATAAATTTGATGATCATATAAAAAATAAACGTATGGAGTAATTTTAAGGTTTATTGAATTTAAGCTTTTGAATCAATTAATAGTTTTATAATTGAAAATAAGTATTCGTACAAAACCCATCTTGATTTTCTTTTGATATGATTTGCAGGACGAACTCAATGGCGATGGCGATGCCAGTGTTCTCGTCAGTGCCATTCATGTTTTGAAGGTAAATTTGGATGATCGAAAAATATCATACACAGTTGGTTGTCG

mRNA sequence

CTCGTTTTGCTTTTCGCGATTATGTCATTTTTTTCAAAGTTCGGTTCTTGTTGGCGGTCGACGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCCGAGGAGGTCAAGGAGCAGAGCGTCGAGATGCTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGGCGTTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGTTCGCCGGTGAAGAAATCCGGCAAAAAGAAGCCGGAGAAGAAAACGTCCGGCCGGCAAGGCAGGCTGAAGACCAAGTCGTCTAGTTATAATGGCAGAGATAATTACTGGACGAACTCAATGGCGATGGCGATGCCAGTGTTCTCGTCAGTGCCATTCATGTTTTGAAGGTAAATTTGGATGATCGAAAAATATCATACACAGTTGGTTGTCG

Coding sequence (CDS)

ATGTCATTTTTTTCAAAGTTCGGTTCTTGTTGGCGGTCGACGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCCGAGGAGGTCAAGGAGCAGAGCGTCGAGATGCTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGGCGTTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGTTCGCCGGTGAAGAAATCCGGCAAAAAGAAGCCGGAGAAGAAAACGTCCGGCCGGCAAGGCAGGCTGAAGACCAAGTCGTCTAGTTATAATGGCAGAGATAATTACTGGACGAACTCAATGGCGATGGCGATGCCAGTGTTCTCGTCAGTGCCATTCATGTTTTGA

Protein sequence

MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPVFSSVPFMF

Homology

[Close]

BLAST of Clc02G01680 vs. NCBI nr
Match: XP_038888636.1 (uncharacterized protein LOC120078432 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 7.4e-45
Identity = 102/118 (86.44%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDS 60
           MSFFSKF SCWRS  VAPRVYLDGAVAEEVKEQSV  LRSSKSESAAHWRPALA ILEDS
Sbjct: 1   MSFFSKFSSCWRSAVVAPRVYLDGAVAEEVKEQSVTRLRSSKSESAAHWRPALADILEDS 60

Query: 61  KGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPVFSSVPFMF 119
           KG RSPVKKSGKKKPEKK SGRQ RL TKS S +GRDNYWTNS+AMAMPVFS VP MF
Sbjct: 61  KGDRSPVKKSGKKKPEKKMSGRQDRLLTKSYSCHGRDNYWTNSVAMAMPVFSPVPVMF 118

[Close]

BLAST of Clc02G01680 vs. NCBI nr
Match: XP_008455392.1 (PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILED 60
           MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+PAL AI+ED
Sbjct: 1   MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWQPALDAIVED 60

Query: 61  SKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYWTNSMAMAMPVFSSVPFMF 119
            KGA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+YW NSMAMAMP FS VP MF
Sbjct: 61  GKGAQSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYWRNSMAMAMPAFSPVPSMF 120

[Close]

BLAST of Clc02G01680 vs. NCBI nr
Match: XP_031745001.1 (uncharacterized protein LOC116405215 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 8.8e-30
Identity = 83/119 (69.75%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 2   SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDS 61
           SF SKFGSCWRS AVAP      AV +EVK EQ V   RSSKSESAAHWRPALAAI+EDS
Sbjct: 3   SFISKFGSCWRSAAVAPH----DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAAIVEDS 62

Query: 62  KGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYWTNSMAMAMPVFSSVPFMF 119
            GA    KKS K+K EKKTSG QG   TKS   Y+GRDNYWTN+MAMAMP FS VP MF
Sbjct: 63  NGAEWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYWTNTMAMAMPAFSPVPSMF 117

[Close]

BLAST of Clc02G01680 vs. NCBI nr
Match: KAA0031624.1 (uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK07076.1 uncharacterized protein E5676_scaffold13G003940 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-28
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILED 60
           MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRPAL AI+ED
Sbjct: 1   MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWRPALDAIVED 60

Query: 61  SKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYW 101
            +GA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+YW
Sbjct: 61  GRGAQSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

[Close]

BLAST of Clc02G01680 vs. NCBI nr
Match: XP_022136180.1 (uncharacterized protein LOC111007936 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPAL 60
           M FFS+FGSC RS A VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  AAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPV 118
           +AILED+  A   +  V KSG++K EKK SGR+ R   KS SY+GRD+YWTNS  +AMP 
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120

[Close]

BLAST of Clc02G01680 vs. ExPASy TrEMBL
Match: A0A1S3C217 (uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILED 60
           MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+PAL AI+ED
Sbjct: 1   MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWQPALDAIVED 60

Query: 61  SKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYWTNSMAMAMPVFSSVPFMF 119
            KGA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+YW NSMAMAMP FS VP MF
Sbjct: 61  GKGAQSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYWRNSMAMAMPAFSPVPSMF 120

[Close]

BLAST of Clc02G01680 vs. ExPASy TrEMBL
Match: A0A5D3C9U7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003940 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.0e-28
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILED 60
           MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRPAL AI+ED
Sbjct: 1   MSFFSKFSSCWRSAAVAPRVYLGDAVSEEVKAEQSVVRPRSSKSDSAAHWRPALDAIVED 60

Query: 61  SKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYW 101
            +GA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+YW
Sbjct: 61  GRGAQSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

[Close]

BLAST of Clc02G01680 vs. ExPASy TrEMBL
Match: A0A6J1C360 (uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007936 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.8e-24
Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPAL 60
           M FFS+FGSC RS A VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  AAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPV 118
           +AILED+  A   +  V KSG++K EKK SGR+ R   KS SY+GRD+YWTNS  +AMP 
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120

[Close]

BLAST of Clc02G01680 vs. ExPASy TrEMBL
Match: A0A0A0K279 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-22
Identity = 69/101 (68.32%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 2   SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDS 61
           SF SKFGSCWRS AVAP      AV +EVK EQ V   RSSKSESAAHWRPALAAI+EDS
Sbjct: 3   SFISKFGSCWRSAAVAPH----DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAAIVEDS 62

Query: 62  KGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNYW 101
            GA    KKS K+K EKKTSG QG   TKS   Y+GRDNYW
Sbjct: 63  NGAEWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYW 99

[Close]

BLAST of Clc02G01680 vs. ExPASy TrEMBL
Match: A0A6J1HXF5 (uncharacterized protein LOC111468353 OS=Cucurbita maxima OX=3661 GN=LOC111468353 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 1   MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDS 60
           M  FSK GS  R  AVA RVY         +EQS+E + SSK  SA+HW+PAL  ILEDS
Sbjct: 1   MPLFSKLGSRLRRAAVARRVY---------QEQSLERVTSSKLGSASHWQPALPPILEDS 60

Query: 61  KGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPVFSSVPFMF 119
           KG RSPVKKSG+K   KKTS +Q R  TKS    GRD YW +S  +AMP F+S PFMF
Sbjct: 61  KGTRSPVKKSGEK---KKTSSQQRRSVTKS---YGRDGYWRSSTMVAMPFFASTPFMF 103

The following BLAST results are available for this feature:

BLAST of Clc02G01680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888636.1	7.4e-45	86.44	uncharacterized protein LOC120078432 [Benincasa hispida]	[more]
XP_008455392.1	2.4e-35	75.00	PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo]	[more]
XP_031745001.1	8.8e-30	69.75	uncharacterized protein LOC116405215 [Cucumis sativus]	[more]
KAA0031624.1	6.3e-28	74.51	uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK...	[more]
XP_022136180.1	1.6e-23	57.48	uncharacterized protein LOC111007936 [Momordica charantia]	[more]

BLAST of Clc02G01680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G01680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C217	1.2e-35	75.00	uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=...	[more]
A0A5D3C9U7	3.0e-28	74.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1C360	7.8e-24	57.48	uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0K279	4.3e-22	68.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1	[more]
A0A6J1HXF5	7.5e-19	56.78	uncharacterized protein LOC111468353 OS=Cucurbita maxima OX=3661 GN=LOC111468353...	[more]

BLAST of Clc02G01680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..98
None	No IPR available	PANTHER	PTHR35318:SF10	SUBFAMILY NOT NAMED	coord: 1..118
None	No IPR available	PANTHER	PTHR35318	BNAA10G08410D PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G01680.1	Clc02G01680.1	mRNA