Clc02G01365 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G01365
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chromosome transmission fidelity protein
Location	ClcChr02: 1353899 .. 1354105 (+)
RNA-Seq Expression	Clc02G01365
Synteny	Clc02G01365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGCTTTTGTTTTCTCGTGGATCAGACCCGTCAGGTGCGGCGGAGCAAACCGGCTGCCGGTTTTTGTTCCCGATGCGGCGGCGGAGCCAGCGTCGCCGACATGAAGACCGCCACTAGATTCTGTTTCGTCCCATTTTATTGGAGGTCTTGGAGAGCCATTATTTGCACTTTTTGTGGAGCTATTATCAGATCCTATCGCTGA

mRNA sequence

ATGGTTTGCTTTTGTTTTCTCGTGGATCAGACCCGTCAGGTGCGGCGGAGCAAACCGGCTGCCGGTTTTTGTTCCCGATGCGGCGGCGGAGCCAGCGTCGCCGACATGAAGACCGCCACTAGATTCTGTTTCGTCCCATTTTATTGGAGGTCTTGGAGAGCCATTATTTGCACTTTTTGTGGAGCTATTATCAGATCCTATCGCTGA

Coding sequence (CDS)

ATGGTTTGCTTTTGTTTTCTCGTGGATCAGACCCGTCAGGTGCGGCGGAGCAAACCGGCTGCCGGTTTTTGTTCCCGATGCGGCGGCGGAGCCAGCGTCGCCGACATGAAGACCGCCACTAGATTCTGTTTCGTCCCATTTTATTGGAGGTCTTGGAGAGCCATTATTTGCACTTTTTGTGGAGCTATTATCAGATCCTATCGCTGA

Protein sequence

MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFCGAIIRSYR

Homology

[Close]

BLAST of Clc02G01365 vs. NCBI nr
Match: KGN43586.1 (hypothetical protein Csa_020149 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 4.9e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. NCBI nr
Match: XP_031744911.1 (uncharacterized protein LOC101203862 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 4.9e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 23 MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 82

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 83 GAIIRSYR 90

[Close]

BLAST of Clc02G01365 vs. NCBI nr
Match: XP_008455347.1 (PREDICTED: uncharacterized protein LOC103495535 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 6.4e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQ+RRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQIRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. NCBI nr
Match: XP_038888489.1 (uncharacterized protein LOC120078322 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFL DQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLFDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. NCBI nr
Match: XP_022952305.1 (uncharacterized protein LOC111455022 [Cucurbita moschata] >XP_022969317.1 uncharacterized protein LOC111468360 [Cucurbita maxima] >XP_023554655.1 uncharacterized protein LOC111811843 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 4.1e-32
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFC VPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCSVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. ExPASy TrEMBL
Match: A0A0A0K6Z7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047225 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. ExPASy TrEMBL
Match: A0A1S3C0P7 (uncharacterized protein LOC103495535 OS=Cucumis melo OX=3656 GN=LOC103495535 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.1e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQ+RRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQIRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. ExPASy TrEMBL
Match: A0A6J1HW11 (uncharacterized protein LOC111468360 OS=Cucurbita maxima OX=3661 GN=LOC111468360 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFC VPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCSVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. ExPASy TrEMBL
Match: A0A6J1GLE1 (uncharacterized protein LOC111455022 OS=Cucurbita moschata OX=3662 GN=LOC111455022 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFC VPFYWRSWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCSVPFYWRSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAIIRSYR
Sbjct: 61 GAIIRSYR 68

[Close]

BLAST of Clc02G01365 vs. ExPASy TrEMBL
Match: A0A6J1AJ08 (uncharacterized protein LOC110418736 OS=Herrania umbratica OX=108875 GN=LOC110418736 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.4e-31
Identity = 62/68 (91.18%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTR+V RSKPAAGFCSRCGGGASVADMKT+TRFC+VPFYW+SWRAIICTFC
Sbjct: 1  MVCFCFLVDQTRKVSRSKPAAGFCSRCGGGASVADMKTSTRFCYVPFYWKSWRAIICTFC 60

Query: 61 GAIIRSYR 69
          GAI+RSYR
Sbjct: 61 GAILRSYR 68

[Close]

BLAST of Clc02G01365 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-30
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQTR+V+RSKPAAG CSRCG  AS+ADMKT+TRFCF+P YWRSWRA++C+FC
Sbjct: 1  MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

Query: 61 GAIIRSYR 69
          G++++SYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Clc02G01365 vs. TAIR 10
Match: AT3G15534.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-27
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          MVCFCFLVDQ R+V+ SKPAAG CSRCG GA VADMKT+TRFC +P Y RSWRAI+C+FC
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GAIIRSYR 69
          G++++SYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Clc02G01365 vs. TAIR 10
Match: AT2G20835.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 66 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 7.5e-24
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MVCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFC 60
          M  FCFLVDQ ++VR  KPAAG CSRCGGGA VADM+T+TRFC VPFY ++W+AI+C  C
Sbjct: 1  MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCGVPFYRKAWKAIVCHIC 60

Query: 61 GAIIRSY 68
          GA+++SY
Sbjct: 61 GAVLKSY 67

[Close]

BLAST of Clc02G01365 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07
Identity = 24/60 (40.00%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 2  VCFCFLVDQTRQVRRSKPAAGFCSRCGGGASVADMKTATRFCFVPFYWRSWRAIICTFCG 61
          +C  F+ DQ  +V     A G C  CGG   V D+ +  RFCFVP   +S R  +C+ CG
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

The following BLAST results are available for this feature:

BLAST of Clc02G01365 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43586.1	4.9e-33	100.00	hypothetical protein Csa_020149 [Cucumis sativus]	[more]
XP_031744911.1	4.9e-33	100.00	uncharacterized protein LOC101203862 [Cucumis sativus]	[more]
XP_008455347.1	6.4e-33	98.53	PREDICTED: uncharacterized protein LOC103495535 [Cucumis melo]	[more]
XP_038888489.1	1.9e-32	98.53	uncharacterized protein LOC120078322 [Benincasa hispida]	[more]
XP_022952305.1	4.1e-32	98.53	uncharacterized protein LOC111455022 [Cucurbita moschata] >XP_022969317.1 unchar...	[more]

BLAST of Clc02G01365 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G01365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Z7	2.4e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047225 PE=4 SV=1	[more]
A0A1S3C0P7	3.1e-33	98.53	uncharacterized protein LOC103495535 OS=Cucumis melo OX=3656 GN=LOC103495535 PE=...	[more]
A0A6J1HW11	2.0e-32	98.53	uncharacterized protein LOC111468360 OS=Cucurbita maxima OX=3661 GN=LOC111468360...	[more]
A0A6J1GLE1	2.0e-32	98.53	uncharacterized protein LOC111455022 OS=Cucurbita moschata OX=3662 GN=LOC1114550...	[more]
A0A6J1AJ08	6.4e-31	91.18	uncharacterized protein LOC110418736 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of Clc02G01365 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52855.1	2.4e-30	76.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15534.1	2.5e-27	73.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20835.1	7.5e-24	67.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.1	2.2e-07	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 1..67
None	No IPR available	PANTHER	PTHR33320:SF2	OS07G0564200 PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G01365.1	Clc02G01365.1	mRNA