Clc01G25450 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G25450
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DEAD-box ATP-dependent RNA helicase
Location	ClcChr01: 35675753 .. 35686336 (-)
RNA-Seq Expression	Clc01G25450
Synteny	Clc01G25450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAGAAGCAGAAGCGAAAGAGCATCCCTGTTCTGCCATGGATGCGAAGCCCTGTCGACGTCTCTCAAATCGAAGAATGTCCCCTCGAGATCCTCCCTCTGCTCGACCCCAGGCAATTTTCTCTTTCGTCATAATCATTTGTATACTTAATCCATTTCTGTTTTCGAGGTTTTCTCTTGTTTATGGCCTCAAATTGACTTCTGTAACTTTCTATTTGATATTCATCATTAATAAAACTCCATTGGAAACAAGTGAATCTTCGGTTGGATGTGTCATTGTGAGCACTGGGCTGTATTATATCTGTGAATTGTATCGACAGGAGTTGAAATTTTGGTTACTGTTTTATGCTCCATATGGCTTGAGATTTAGATGACTCTTTTTTGGTGCCGGGAAATTCATTATCCTAGAGTCTAGTTGCCCAGTTCCTACAGCATTCGATTTAGCTTTACGTGTTTTTTCTGACTGAAGAAAATTAAGTTAGATGGTTTCCTCTTCCTCAGGGGTCTAATTTTAACGTTTTTTTTCTCTCCATAATTTTGTCTCCCAACGTTAGATTGAAGGTAGCTCTGCAGAACATGGGCGTCTCTTCACTGTTTCCAGTGCAACTCGCAGTTTGGCAAGAGACAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTGGTTGTGCTGCCTACTCGTGATTTGGCCTTGCAGGTTTTTGATTTGCTATCACTTATTTAAGATATAAATTCCTGTAAAGTGCAAATAAGAAGTTTATTGAGTTTATGCCCCTTATTTTACATGGAATCTGCTAATGTTTTTACTCCAATTCATTGATTGGAAGTACACTGTTTTAATATTCTGTAGTACCCTGCTAATGAAATAGTAAATGATTATTTTTATTAATATTTGTGAGTGTCCGGGCCAGCTTACGCGCATCTCGACTAATCTCACGGGACAATCTACTTGACCCTACAACATTTGGGTGTCAAGGAAACTTGTAAGATATTAATTCTTAGGTAGGTGGCAACCATGGTGAACCCAGTGACCTCTTAGCATTTATTGGGATCATGTCTCATTTTTTACCACTAGGCCAATCCATGATGGTTAATAAATAATAAAATGATAGCAGGTTTTTCCCTATTTTTTTGGGTGGTTTTTGGATTCAATTTTTGTTGGAAAGTTAATGGGGATATTCTTGGTGGGTCCGACTTTTGGCATGATCACTCTCACTTCCTTAGCATTTTAATATCAATAAATTCTTCTTTTAATTGTAAATTGCCCTTTATACAACGAGTGATAAAAAGAAATGGCAAAGGAATCTTGTTTCTAAACAGTGTTAAATGATGCTATTCAACTGATGGGATGAATTGGATCTGATCTTGATCTTAGAATAACTTTGCTTTTTGGATAAGAATCTTATAAAAACTCGGAAATTCTTCTTGATGAACTGCATGAAGTATGCTCACAACTCTTCTTAATCAGGTTAAAGAAGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCTGTTGGTCAATCCTCCATAGCGGATGAAATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGGCAGGTATCTGTTATGATCCAGAAGACTCTTCAGTTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACCATATTAACCTCACGAAGGGGTTTACTCTTCAGCATCTACGTTATCTTGTAAGCTCTCATTGTTATAACCTAATATTTTTAATTACATTTATATTTGAGAAGGCTTAATGTTGATGTTAAATACTATGGAAAATGTCTTCTCCTGAAAAAGGATATACTGTGTTAAATTATGGTTTAAGGATGGACTTAGTCAACGTGTCTGACCAAAATTTATTTGTTATGGAAATTTGATGTTCCATGCCTAAAAGTTTTATTTATTTATTAAATTAACATAAATTAACGTGGCTGATTTTCAAATGAATCTGTAAGCTGAAAAATTAGGTTTATACCTACACATAAGTCTGCTATCATGTGTTAGGATGAATGGTTATTTTAACTTATACCACTTTTGAGCTTTTGGTGTCTCAATACAATCTGTTGATGAGATATACTATTCAGGTTATCGATGAGACCGATAGGTTATTAAGGGAAGCGTATCAATCTTGGCTACCTACCGTGCTCCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACTTCCTTGCTCAGCTGGATCTTTAAAAACCATAAGGAGATTGTAAGTTCTACTTATTGTACTATTGTGCGCCATTGTTATAACTAATCCTCCTTAATTTTTTTTCTTTGGCATGTTCTTTCTTGTTCATCTCAAAATTTCCCGTGGTTAAAACTATTGTGCTGACTGCATATACTTTTTGGATTCATGCAGTGGTGTTGAGAGAGGTTTTAAGGGTAAACCTTACCCAAGGCTTGCAAAGATGGTTCTATCTGCAACGCTTACACAGGATCCAGGCAAGCTTGCACAGCTTGATCTGCATCACCCTCTATTCTTAACAACTGGGAAAAGAAGATATAAACTTCCGGAGAAATTAGAATCATACATGATGGTAAATTGGCCCGTCTCTTAATTAATCTGTGATTGAATCATTTCTTGTGTGCTTGTTTAGGAAGGAGAAAAGTGTACACTTAACCATAAAAATGGGACACCATTGGTTTTACCCTAGCCTTGGGCTTTGGGTACCAATGAGTTCATAAACATTCATACTTATTGATTGTTAGCAACGGGATCCTAGGTGATATATTTGCAACTTCTAATGTTCTTTGATGACATGGTAATACTTTCTTAAGTAACCTTTTAGTTTCAATTTGTTTCTTTGCAGATTTGTGAATCAAAGCTCAAACCATTATATCTGGTTGCTCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCTGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGATGGCTTGGAACTCAAGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGGTAACACTGGAAGATGGTTTTTAACTTTAGTGCTTTCTCCCTCCCCATTCTAAGTATTGTAAGAAGTAATGAAGCACGTGCAACATGAAGCTTGGGGACCTCTCTAAATTTCTTGGACTATGATTCATGGTTCTCAGATACAGCCCTACTTATTTCTGTGCCCGTCTGTGCACAGGCTACCTACATAAGAAACTGTGACTTCGTTATATGGAATACGTATGCATATTATTCTACAATTAAATGTGCACCACATCTGTTTCATACAGGTTTTTATTTTTATTTTTTAAAAAGTTATTTATATATCTATTATTATTATTATTAATTTAATTTTATACTAAAAAATGCTGTATGTGTGAAAAACTGTCTTCTATTGACACTCTTTAGTTAGCTTTACGTTGATGAGTATTTTTGTTCCATGGAGATCGGTATTACTTTATAGATTGCTATTTGTACCATTTATCATTTTAATCTCTTAACATGTTCTTATTTGTGCATACTGCATTTTTGCTTTCATTCTCTCTTATGGATGTTCATTTTATTGCTGAGATTTCCTGGTGATTAAATTGACATACGTTCTGCAGCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAGTACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTGAGGGTGTGAAAAATGTTATTAATTACGATATGCCTGCATTTATAAAAACATACATTCATCGAGCTGGTAGGACTGCAAGGGCTGGGCAGTCTGGGCGTTGTTTCACATTGCTGAGAAAAGATGAGGTATTTTGTGATAAAGCCTTGACGTTTAAATTATGTTTTCATGCTTTCGTTGGGATTTCATGCCTCTCTTTGGATTTTTGTTTGTAAAGACTTTCGTAATTATCCCTTTAGGTCTTATTTTGCTTGATTTGAAGTCCCTTTTTTAGATTAGTTGGACCTTTATTTTATTATTATTATTATTTATTATTTTTAATTTCCCATGTGTTCTTTCATTTTATCTTTGCTTTTTACCAAAAGAAAAACGATTTTAAATTCTTAGCTTGCTGTTAGTTCCTTCTCCATATGTCTATGTCCCAATAGCGTTGGCTTTATATCTTCACTTTTGTCCTCTGGCTGCCATTTGGGTAAAAAGGATCCCCAAAACTTTTTAAAATATCTAATAAGATACAAAATATGTAACAAAGCCTGCAACTTTCAATTTTGTGTCTAATAGGTTTCTAAATTTTATAAATGTCTAATAAATCCTTGAATTCTCAATTTTGTCTCATAAATTTGTAACATATTCAAAATTTATAAAAATCAATTGATTAATTAGTTATAATTTTCTTTTTAACCTAGACTTAAAATTTAAATGTAAAGGGATCTATTATTGACAACTTTTAAAAGTTCAAGAACCAATTTGACACAAATTAGAAATTTAGGGAACTATTAGAAACAAAATTAAAAGTTTGAAGATCTATTAAATACTTTTTAAAGTTCAAGGTCTATTAGACCCAAAATTAAAAGTTTAGGCTTCTATTATTGACACCTTATGAAGTTTAAGGATGAATGATCAAATAAACACAAATGTGAAAATTTAGGGACTACACTTGCAATTCAACTTAGAATAATAATACTATTTAACCTTGGGCAGACAGTCCACCATGTCTCAGTCACAGCCCACCCCTACCTCCCCCATTCGATCTATTCACATTGATCGGAAAATCTTCTTTATTTTCTCGGTTACCCCAAATGGAGGGAAGCACTTCAAAATTTCTTAACAAACCCCATCCAACATTCACTCTATCTTTGTCTCTTAGAAGTCTCTTGATTTGCTTGCAACTTCATTCAATTCTCTTCACAAAGAATCTTGTAACCAAAAGTTCTTTAGAAAATTGAACGATGAAGGAGATACCCTTTGGCTTGAGAAGCACAACAACAAGTATGGTTATTTTGCGGAGCTCACGTTATTGGAACAATCTGGTCGCCATTCAAACATCCTCATCCCAACTATGGAGGACTGGTTCTCCTTCTTCTCACTGGTATCCGACTACCTAACAAGATGTTGCCTTTCAACAAACCAATCTCTTACAGTGAAGTAGTACAATTGAAAGGGCCTCCTCCAGAAATCCAACAACAGAATACTGCCTCCTTGGCAGCATTATGCTAATCCAATCCCCCACATTGATTGGTTGGTAATCCAATCCCCCACACTGATTGGTTGGCTATGGTGATTGCTCAACGTTTCACAATAAAAGACACATGGCTGAAGATATGTGCAACTCTTCAAGCATCCATCTCACCCAGGTGCTCCATTAATCCTCTCTCGGATGATAAAGTTCTTCTCCATGTTTACAATTTTGAAACTGCGAAGCAGCTGTGTATATCATCCGATTGGACTACAATTGACCAAAGGAAGCTTAGATTTCTCTCTACATCTCAACCGTTTTCCTTCCAATGGCAGATGATTGCATCATATGGGAGTTGGATCGATCTTTATCACCTTCTGATCACCCTCTGGACAGAAGCCATTTTCAAGTTCATTGGTGACTTTTGTGGAAGCTACCTTCATCCCTCTAATCAAACCGAAAGAGGTTTAAACCTCTCTTTCGCCCGCATCAAAATTAAAGACGATTAACGAGGCTTCATTCCTCGCGAAGTTCGTCTTCCCAATGAGATTTTCGGAGCCGACATCACCGTTTCCATCAAAGCCCCCATTCCTAGAACTTTGGGCTAGCGAGATGATCTGAAACCGACATATGGAACCAACATTAATGAAAAGGCTGAAATCGTGGATCACAATCAATACCAGATGGATGATAAAGGTAAATCTATTGCCAAAAATACGATTCATTCGAAATTCCCCCCTCCCCTTATTTGGAGCAACCTATTGATCTGGAATCTCTCTCTCCTATTCATCAACCATTGCCATTGACCGAATCTCCTCAAATAAAGGAGAATATCCCTCTTTCTCCCAAAATAACTGAATCATCAATTCTTTCTCCTCTCTCCTCCAATTAAGGAGAATTTTATCCTCTCCTCACCCAAAATAACATCTTCACCCACACCTACCGTCAACCCCAACCGAATTAATCCTGATCAACCCCTTCCTTTAATTTCCATAATCAGAATCTTAGCCTCGCAAATAAGACATCTCCTTCCTTCTCGCAACCGTCTCTCTCCATTGTCACCTTTTGTGAGGGTCCCACTACACTCCACGCTGGCCATTATTTTAAACGGTCGTCCTTGTGGCAATATTATCCGTACGCGCGGTATTAGCCAGGGAGACCCTCTCTCTCCCTTCTTTTTTATTATTGTTGCCGACTGCTTGCTCACAGCTCCTCTTTGGGCCTTACTATTGTTCACCCCATTGGTCAGTCATCTTTTTCGATTAACCATTTGCAGTTTGCAGATGATACATTGCTCTTCTCCATTGTTGAAAGATCTGCTTTACAGAACTTATTTGATGTGATTCATATTTTTGAATGTGCTTCTAGCCTTAAAGTCAATCTTGCCAAGAGTGAGCTCCTTGGGATTCACAAACTCTGATTCTAAGGTGGATGCGTGGTTGAACTCTTTTGGTTGCAAGAGAGGTTTATGGCCTTCTTATCTTGGTCTTTCGTTGGGTGACAACTCTTCTACAATTACATTTTCACAACCTATGGTCGAAAGATTTTAGTATAAACTTCATAACTGGAAGTATGCCTATATATCGAAAGGGGGAGACATACGCTTATTCAAGCTACTCTTCTATCCTCCCTATCTACTATTTGTCGTTTTGAGCTCCTTCCTTTATCATAAGTTGTCTTGACAAGCTGACTCGTGATTTTTGTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATATTAACTGGGCTATCTCTCAGAGGCCTCAATTGTCGGGTGGCATGGAGATTGGTAATTTTAAGTATTGTAATTATGCTCTTCTTGCTAAATGGATGTGGCGCTTCATTACTGAGCATGTACCTTATGAAGAAAGCTTATTGTGGCGGAGTATTATTGCGGAGTATTATTCCTTTGATTGTATTTGACCCTCTCTTATCTCTTGAGGATCGTTTAAGGCTCCTTGGAGGTCTATTTGCCATTTCTTAGATTTGGTTGTGGATCGAGTCCCCGTCGCCTAGGTGATGGTGGTTCTACATCTTTTTGGCATGATCATTGGCTTAGATATGGTGTTCTTGCTGCTACATATCCTACGACTCTCTCGGCTCACTCAACATCCGGAGGCTATGGTAGCCAATGTTTGGGTTCCTTCCACATCTGCTTGGAATCTTAATTTGCAACGCAACCTCATTGAGTTGGAAATTATTGAATGGGCATCCCTTTCTGATTATCTGGCCACAATCAGATTGCGTTCCTTCCCTGATTCTTGGTTATGGCCTCTTGACTCTTCTTTGACCTTTACTGTTAAATCTTTGATGGCTGATTTGGTGGGTGATTTGGATTCTAGTCTGTCAGATCTCTATAGTGTTATTTAGAAAGATAAATATCCTAAAAAGATTAGAATTTTTCTCTAAGAGCTTAGTTGGAGTGCCGTTAACACTGCTGATTGTCTCCAGCGCCAATTGCCCTATATGTCTCTTTCTCCATCTTGGTGCCATATGTGTCATAAGAATGTTGAATCGCCGGTTCACTTGTTTATGCACTGTTCCTTTGCCACTAAATTTTGGGACGTTGTCTTGCATGCTTTTGGGTGGTCGTATACTTGTCTTAATATTATCTCGGAGATATGCACTAAGAAAACTATTTAGCTGACATTATTTGTGCTTTCTTATGGGGCACATGGAATGAACGGAATGGATGACTTTTTAATGATTCCTTTTTCTCTTTTCCTCGTTTTATGGAGAATGTTTTATCTACTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAACGCAGCCCCCTTTTACTCATTTCAGCTTATCCTTTTGAGTCAATAATTGATTTTCTCTCATGTAGCTCTTGTATTTTTCGGGGTTTTCCCCTTTATATATAAATGTTTCCTTTAAAAGTATTTAACCTTGGGCCTTGTCAATTCTGTGGTAATGCATAAGCCATAAGTAAATACTTGCTGGTTTATAGTTCAGTTTGAAGGTGAATCCCTTTTGGTTTGAGCCTTCTTTGTTTCTGGTTAAAAAAAGGTTACAGATGAGTAATTGAGCTTTATGTATTAGTCCAACTTGCTTATTCTTAGATTCTTATGTTTCAGGTTAGGCGTTTCAAGAAATTACTACAGAAGGCTGATAATGATTCTTGCCCAATACATTCCCTACCTTCAAGTTCAATTGAGCTTCTTCAGCCTACTTATGTCTCTGGTAACACCTCGTCCCTTTTGACTATTCGGAAAAACTGCTCTAACTAGCCCAAGTAATTGAAAATGTTGGGCTCCATATTCCTTTGGTCCGTGCATCAAATCGACTTTGCTCTTTCTTCATTATCCAAAAGTAAAAAAGGCTGCAGGGTTAATTTGTTGGGAAGGATGTGTTGTTTTCAGTGAACCTGCTGCATGAATGAAAAAATATAATATTCTATTGTTTTTGTTCTTACAAATATTTTCTGAATATTTTTCCCATTTTGGTTCTTAATGATTAACAGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAACATCCGGAAAGAGTACAATCACATCTTCTAGAGCGGGCAAACGAAAAGATGCGAACTCCTCCAAAGGAAAGGTTGGTTAATGCAAACAAGCTCCTATGATAATAGTGTCCCATGTTGTAACAAGAAAAATTTTTCGAATGAACATGGTGGCCATGTGTTAGGAACTAAGGTAGTATGAGCTACCTTTGTCCCATATTGGTTAGAATGGTATGACCAATGTAGTACTTAAGTGGCTTGGCTCTCTCACTTCAATAATTAGCTTTTGGAGTGTGGTTCTTCAAGGTGCTTAAGTACCCAACAATGGTATCAAAGCTGATTGTTGATGTTTTGGAGTGGAATCAACGAAGGGTTTTGACCGGGTGTGACCGAGTGAAGTACCGTTGGAGTAGCCGCCGGGACGTTGGCTTTTCGGGGATGGGATATTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGATCAATGTGGGTACTTACGTGGCTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACGGAAAATTAAATGGCAGGTGCGTTTTAAATGTTTCACCACTAACTAGGGGTCTGAATGATAGCATTCTCATGCACTAGAACATTACAAATTCCCCATTTCAAACTCGACTAAATGTTTAACTAATGGACTGCCCTTAGTTAAAACAAAAACACAACTAATGGCGTGATAATCATCTTAAAAACATTACTAACAAATGGACTGAATGACAATATTCTTATGCATTAAAACATTACAATTTCCCCATTTCTATCTCGACTGGACTAACTATACATATGGTTGTCTTACAGTCTTAGCAAGTTCACTGGAAACCATGCAAGTACAAATTTCCGGGACTCGATCTACAAGGACATGAGAATTCAACTACAAGAGATGGCGATGAAGCCTTCTTTAGGCTCTATTATCCACTCGACACTACACATTCAATCACTGAATTTGGAGAAAGATCTTATGTTTCTGACGAAGTACATAGAATTGGCACCAACTGCCATAGCCGCAGGGGTAGTTGATGATGTTAGGCTTCTTGTGGAAGCAGCAGTATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTATCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATTTGCGGTGGTGCAACCTCAGTAACGAACCTTGCTATACGGGAATTTGCCATTTTTTTTGGAGAGTTGGATGTTGGAGGATGATGATTGAGAATGTTGGAAGTTCGGAGCTCTGATTGGTCTGGCTGAGAGCCTGAGAGTGAATGCAAGTTTTTTGGGTGATATTTATGAGGATCTTGTTAGACTAGGAATTGAATGAAAGTGGGGATACTTGAAATCAATATTTTGGCTCTTGGTGGTGCCGCCTAATTCAACTACTATTGCTATTTATTGCAATTCTCAAATAGCCGATCTCTTTCCCAGACCTTTCTAGGAGATTAACTTGTGGTATTTGGAGGTATAGTCCAAAATTTGCTGGGGACCGGGTGCCCTTTGCATTTGCCCTCTTCAAAATTTAACTATGATTGGCAAATCCATATGCCACGTTTCTGAATTTTATGGCCGATAAGTATGTTAATGTTGACAAAATTTCTTGTCAGTTATTAAATTGTGTAAAAATTTCTGACAAGTGTCAGAATCTTCAAGGAACGAAATTGCTGTATTAATTGAGCAAGAAGATTTATGGATGTTGATAAGGTGC

mRNA sequence

CGGAGAAGCAGAAGCGAAAGAGCATCCCTGTTCTGCCATGGATGCGAAGCCCTGTCGACGTCTCTCAAATCGAAGAATGTCCCCTCGAGATCCTCCCTCTGCTCGACCCCAGATTGAAGGTAGCTCTGCAGAACATGGGCGTCTCTTCACTGTTTCCAGTGCAACTCGCAGTTTGGCAAGAGACAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTGGTTGTGCTGCCTACTCGTGATTTGGCCTTGCAGGTTAAAGAAGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCTGTTGGTCAATCCTCCATAGCGGATGAAATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGGCAGGTATCTGTTATGATCCAGAAGACTCTTCAGTTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACCATATTAACCTCACGAAGGGGTTTACTCTTCAGCATCTACGTTATCTTGTTATCGATGAGACCGATAGGTTATTAAGGGAAGCGTATCAATCTTGGCTACCTACCGTGCTCCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACTTCCTTGCTCAGCTGGATCTTTAAAAACCATAAGGAGATTGAAGGAGAAAAGTGTACACTTAACCATAAAAATGGGACACCATTGGTTTTACCCTAGCCTTGGGCTTTGGATTTGTGAATCAAAGCTCAAACCATTATATCTGGTTGCTCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCTGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGATGGCTTGGAACTCAAGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGCTTGGGGACCTCTCTAAATTTCTTGGACTATGATTCATGGTTCTCAGATACAGCCCTACTTATTTCTGTGCCCGTCTGTGCACAGGCTACCTACATAAGAAACTGTGACTTCGTTATATGGAATACCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAGTACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTAGGCGTTTCAAGAAATTACTACAGAAGGCTGATAATGATTCTTGCCCAATACATTCCCTACCTTCAAGTTCAATTGAGCTTCTTCAGCCTACTTATGTCTCTGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAACATCCGGAAAGAGTACAATCACATCTTCTAGAGCGGGCAAACGAAAAGATGCGAACTCCTCCAAAGGAAAGCATTCTCATGCACTAGAACATTACAAATTCCCCATTTCAAACTCGACTAAATGTTTAACTAATGGACTGCCTCTTAGCAAGTTCACTGGAAACCATGCAAGTACAAATTTCCGGGACTCGATCTACAAGGACATGAGAATTCAACTACAAGAGATGGCGATGAAGCCTTCTTTAGGCTCTATTATCCACTCGACACTACACATTCAATCACTGAATTTGGAGAAAGATCTTATGTTTCTGACGAAGTACATAGAATTGGCACCAACTGCCATAGCCGCAGGGGTAGTTGATGATGTTAGGCTTCTTGTGGAAGCAGCAGTATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTATCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATTTGCGGTGGTGCAACCTCAGTAACGAACCTTGCTATACGGGAATTTGCCATTTTTTTTGGAGAGTTGGATGTTGGAGGATGATGATTGAGAATGTTGGAAGTTCGGAGCTCTGATTGGTCTGGCTGAGAGCCTGAGAGTGAATGCAAGTTTTTTGGGTGATATTTATGAGGATCTTGTTAGACTAGGAATTGAATGAAAGTGGGGATACTTGAAATCAATATTTTGGCTCTTGGTGGTGCCGCCTAATTCAACTACTATTGCTATTTATTGCAATTCTCAAATAGCCGATCTCTTTCCCAGACCTTTCTAGGAGATTAACTTGTGGTATTTGGAGGTATAGTCCAAAATTTGCTGGGGACCGGGTGCCCTTTGCATTTGCCCTCTTCAAAATTTAACTATGATTGGCAAATCCATATGCCACGTTTCTGAATTTTATGGCCGATAAGTATGTTAATGTTGACAAAATTTCTTGTCAGTTATTAAATTGTGTAAAAATTTCTGACAAGTGTCAGAATCTTCAAGGAACGAAATTGCTGTATTAATTGAGCAAGAAGATTTATGGATGTTGATAAGGTGC

Coding sequence (CDS)

ATGCGAAGCCCTGTCGACGTCTCTCAAATCGAAGAATGTCCCCTCGAGATCCTCCCTCTGCTCGACCCCAGATTGAAGGTAGCTCTGCAGAACATGGGCGTCTCTTCACTGTTTCCAGTGCAACTCGCAGTTTGGCAAGAGACAATTGGACCCGGTTCATTTGATAGAGACCTATGTATTAATTCACCAACTGGAAGTGGGAAAACTTTAGCTTATGCCCTACCAATAGTGCAAATGCTGTCAAGTCGTGCAGTCAAATGCTTGCGTGCTTTGGTTGTGCTGCCTACTCGTGATTTGGCCTTGCAGGTTAAAGAAGTTTTTACTGCAATCGCACCTGCAGTGGGCTTATCTGTAGGTCTGGCTGTTGGTCAATCCTCCATAGCGGATGAAATTTCTGAGCTCATCAAGAGACCTAAGCTTGAGGCAGGTATCTGTTATGATCCAGAAGACTCTTCAGTTGAGCTGCAGAGTTCTGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACCATATTAACCTCACGAAGGGGTTTACTCTTCAGCATCTACGTTATCTTGTTATCGATGAGACCGATAGGTTATTAAGGGAAGCGTATCAATCTTGGCTACCTACCGTGCTCCAGTTGACTCATGCTGATGATGACAGTATCATCTTTCCTTCCTACATTTCACTTCCTTGCTCAGCTGGATCTTTAAAAACCATAAGGAGATTGAAGGAGAAAAGTGTACACTTAACCATAAAAATGGGACACCATTGGTTTTACCCTAGCCTTGGGCTTTGGATTTGTGAATCAAAGCTCAAACCATTATATCTGGTTGCTCTACTTCAGAGTTTAGGAGGAGAGAAGTGTATTGTTTTTACATCCTCTGTGGAGTCTACTCATCGACTATGCTCTTTACTTAACTTTTTTGATGGCTTGGAACTCAAGATTAAAGAGTATTCAGGGCTTCAACGTCAATCATTAAGAAGCTTGGGGACCTCTCTAAATTTCTTGGACTATGATTCATGGTTCTCAGATACAGCCCTACTTATTTCTGTGCCCGTCTGTGCACAGGCTACCTACATAAGAAACTGTGACTTCGTTATATGGAATACCAAGACACTGAATGCTTTCCGGGGAGGGGAGATTCAAGTACTTGTTAGTTCTGATGCCATGACTCGTGGAATGGATGTTAGGCGTTTCAAGAAATTACTACAGAAGGCTGATAATGATTCTTGCCCAATACATTCCCTACCTTCAAGTTCAATTGAGCTTCTTCAGCCTACTTATGTCTCTGCCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAACATCCGGAAAGAGTACAATCACATCTTCTAGAGCGGGCAAACGAAAAGATGCGAACTCCTCCAAAGGAAAGCATTCTCATGCACTAGAACATTACAAATTCCCCATTTCAAACTCGACTAAATGTTTAACTAATGGACTGCCTCTTAGCAAGTTCACTGGAAACCATGCAAGTACAAATTTCCGGGACTCGATCTACAAGGACATGAGAATTCAACTACAAGAGATGGCGATGAAGCCTTCTTTAGGCTCTATTATCCACTCGACACTACACATTCAATCACTGAATTTGGAGAAAGATCTTATGTTTCTGACGAAGTACATAGAATTGGCACCAACTGCCATAGCCGCAGGGGTAGTTGATGATGTTAGGCTTCTTGTGGAAGCAGCAGTATACTCATTCTTGCTGCACTCTCTCTCCTCTTCACTGATGGTATCCAACACTTTCGATGTTCGGCGTCTCATGACACTGATAATTTGCGGTGGTGCAACCTCAGTAACGAACCTTGCTATACGGGAATTTGCCATTTTTTTTGGAGAGTTGGATGTTGGAGGATGA

Protein sequence

MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLKEKSVHLTIKMGHHWFYPSLGLWICESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSSDAMTRGMDVRRFKKLLQKADNDSCPIHSLPSSSIELLQPTYVSALEKLKEKVESETSGKSTITSSRAGKRKDANSSKGKHSHALEHYKFPISNSTKCLTNGLPLSKFTGNHASTNFRDSIYKDMRIQLQEMAMKPSLGSIIHSTLHIQSLNLEKDLMFLTKYIELAPTAIAAGVVDDVRLLVEAAVYSFLLHSLSSSLMVSNTFDVRRLMTLIICGGATSVTNLAIREFAIFFGELDVGG

Homology

[Close]

BLAST of Clc01G25450 vs. NCBI nr
Match: XP_038881724.1 (DEAD-box ATP-dependent RNA helicase 1 [Benincasa hispida])

HSP 1 Score: 662.9 bits (1709), Expect = 2.7e-186
Identity = 387/543 (71.27%), Postives = 396/543 (72.93%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS IEECPLEILPLLD RLKVALQNMG+SSLFPVQLAVWQE IGPGSFDRDLCI
Sbjct: 16  MRSPVDVSLIEECPLEILPLLDSRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEISELIKRPKL+AGICYDP+D SVELQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISELIKRPKLDAGICYDPDDFSVELQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           LQHL YLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYIS PCSAGSLKTIRR  
Sbjct: 196 LQHLCYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISHPCSAGSLKTIRRFG 255

Query: 241 ----LKEK----------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
                K K          S  LT   G       H     + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHQPLLLTTGKRRYKLPEKLESYMLIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEI+VLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIEVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           V+RFKKLLQ
Sbjct: 436 DAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. NCBI nr
Match: XP_008439599.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo])

HSP 1 Score: 656.4 bits (1692), Expect = 2.5e-184
Identity = 382/543 (70.35%), Postives = 393/543 (72.38%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS IEECPLEILP+LD RLKVALQNMG+SSLFPVQLAVWQE IGPGSFDRDLCI
Sbjct: 16  MRSPVDVSLIEECPLEILPMLDHRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR +KCLRALVVLPTRDLALQVKEVF+AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTIKCLRALVVLPTRDLALQVKEVFSAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEISELIKRPKLEAGICYDPED  V LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISELIKRPKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           L+HLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS PCSAGSLKTIRR  
Sbjct: 196 LKHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFG 255

Query: 241 ----LKEK----------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
                K K          S  LT   G       HH  + + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMILSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPEKLESYMMIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLG EKCIVFTSSVESTHRLCSLLNFF+ LELKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           V+RFKKLLQ
Sbjct: 436 DAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. NCBI nr
Match: XP_004134588.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus] >KGN49421.1 hypothetical protein Csa_003238 [Cucumis sativus])

HSP 1 Score: 652.9 bits (1683), Expect = 2.8e-183
Identity = 380/543 (69.98%), Postives = 392/543 (72.19%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS IEECPLEILP+LD RLK ALQNMG+SSLFPVQLAVWQE IGPGSFDRDLCI
Sbjct: 16  MRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF+AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFSAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEISELIKRPKLEAGICYDP+D  VELQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS PCS GSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPCSDGSLKTIRRFG 255

Query: 241 ----LKEK----------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
                K K          S  LT   G       HH  + + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPEKLESYMMIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLG EKCIVFTSSVESTHRLCSLLNFF+ LELKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           V+RFKKLLQ
Sbjct: 436 DAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. NCBI nr
Match: XP_022926614.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata])

HSP 1 Score: 649.4 bits (1674), Expect = 3.1e-182
Identity = 372/542 (68.63%), Postives = 387/542 (71.40%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS  EECPLEILP LDPRLK ALQNMG+SSLFPVQLAVWQE IGPGSF+RDLCI
Sbjct: 16  MRSPVDVSLFEECPLEILPSLDPRLKAALQNMGISSLFPVQLAVWQEAIGPGSFERDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEI+ LIKRPKLEAGICYDPED SV+LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEIAGLIKRPKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLK 240
           LQHLRYLVIDETDRLLRE+YQSWLPTVLQLTH DD++IIFPSY SLPCSAGSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLRESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTIRRFG 255

Query: 241 EK----------------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
            +                S  LT   G       H   + + G             + IC
Sbjct: 256 IERGFKGACYPRFSKMVLSATLTQDPGKLAQLDLHRPLFLTTGKRRYKLPEKLESYMTIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLC+LLNFFD L+LKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCTLLNFFDDLQLKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGE+QVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEVQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           VRRFKKLLQ
Sbjct: 436 DAMTRGMDVEGVRNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLCKDEVRRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. NCBI nr
Match: XP_023517664.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 647.5 bits (1669), Expect = 1.2e-181
Identity = 372/542 (68.63%), Postives = 386/542 (71.22%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS  EECPLEILP LDPRLK ALQNMG+SSLFPVQLAVWQE IGPGSF+RDLCI
Sbjct: 16  MRSPVDVSLFEECPLEILPSLDPRLKAALQNMGISSLFPVQLAVWQEAIGPGSFERDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEI+ LIKRPKLEAGICYDPED  V+LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEIAGLIKRPKLEAGICYDPEDFLVQLQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLK 240
           LQHLRYLVIDETDRLLRE+YQSWLPTVLQLTH DD++IIFPSY SLPCSAGSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLRESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTIRRFG 255

Query: 241 EK----------------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
            +                S  LT   G       H   + + G             + IC
Sbjct: 256 IERGFKGACYPRFSKMVLSATLTQDPGKLAQLDLHRPLFLTTGKRRYKLPEKLESYMTIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLC+LLNFFD L+LKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCTLLNFFDDLQLKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           VRRFKKLLQ
Sbjct: 436 DAMTRGMDVEGVRNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLSKDEVRRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot
Match: Q7FGZ2 (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=2 SV=3)

HSP 1 Score: 486.9 bits (1252), Expect = 3.5e-136
Identity = 282/523 (53.92%), Postives = 334/523 (63.86%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MR+PVDVS +E C L+ LP L+P+LK AL+NMG+SSLFPVQ+AVW ETIGPG F+RD+C+
Sbjct: 18  MRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICV 77

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTL+YALPIVQ+L+SR V+CLRALVVLPTRDLALQVK+VF AIAPAVGLSVG 
Sbjct: 78  NSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGS 137

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIA EIS+LIK PKL+AGICYDP+D S  L+S+VDILVATPGRLMDHIN TKGFT
Sbjct: 138 AVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFT 197

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYIS-LPCSAGSLKTIRR- 240
           L+HLRYLV+DETDRLLREAYQSWLPTVLQLT   DDS +FPS+   +P + GSL+T+RR 
Sbjct: 198 LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDS-LFPSFTPFVPSAFGSLQTVRRQ 257

Query: 241 -----LKEKSVHLTIKMG-----------------HHWFYPSLG-------------LWI 300
                 K K     +KM                  HH  + + G               I
Sbjct: 258 SVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLI 317

Query: 301 CESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSL 360
           CE+ +KP+YLVALL+S  GEKCI+FTSSVE+T RLC LLNFF   ++K KEYSG   QSL
Sbjct: 318 CETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSL 377

Query: 361 RSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVS 420
           RS                                          K L AFR G+IQVLV+
Sbjct: 378 RS------------------------------------------KELKAFRKGDIQVLVA 437

Query: 421 SDAMTRGMD-------------------------------------------VRRFKKLL 444
           SDA+TRGMD                                           VRRF KLL
Sbjct: 438 SDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLL 497

[Close]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot
Match: Q0DWT8 (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.0e-112
Identity = 247/535 (46.17%), Postives = 307/535 (57.38%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MR+PVD+     CP+  LP LDPRL   LQ MG+ S FPVQ+A W ETIGPG+F+RD+CI
Sbjct: 24  MRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFERDICI 83

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQML++R V+CLRALVVLPTRDLALQVKEVF AIAP VGLSVG 
Sbjct: 84  NSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLSVGS 143

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADE+S LI++ K       D E   +E Q+ VDILVATPGRLMDHI++TKGF+
Sbjct: 144 AVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFS 203

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDS----------------------- 240
           L+HL+YLV+DETDR+LREAYQSWLPTV+QLT + D +                       
Sbjct: 204 LEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNGETLLHPLTTIRRSGV 263

Query: 241 ------IIFPSYISLPCSAGSLKTIRRLKEKSVH--LTIKMGHHWFYPSLGL----WICE 300
                   FP    +  SA   +   +L +  +   L +  G   +     L     +C+
Sbjct: 264 ERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCK 323

Query: 301 SKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLRS 360
           S LKPL L+ LLQ L GEKC+VFTSSVES+HRL +LL FF+ L  K  EYS LQR+S R 
Sbjct: 324 SNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRESTR- 383

Query: 361 LGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSSD 420
                                                     KTL+AF+ G+I VL+ +D
Sbjct: 384 -----------------------------------------RKTLDAFKEGKIDVLIGTD 443

Query: 421 AMTRGM-------------------------------------------DVRRFKKLLQK 456
            M RG+                                           +V+ F K+L+K
Sbjct: 444 RMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKK 503

[Close]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot
Match: Q8N8A6 (ATP-dependent RNA helicase DDX51 OS=Homo sapiens OX=9606 GN=DDX51 PE=1 SV=3)

HSP 1 Score: 180.3 bits (456), Expect = 6.9e-44
Identity = 152/490 (31.02%), Postives = 231/490 (47.14%), Query Frame = 0


Query: 14  PLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQE---------TIGPGSF-DRDLCINSP 73
           P+E +P + P L+  L+  G+SS FPVQ AV             +G G +   DLC+++P
Sbjct: 198 PIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAP 257

Query: 74  TGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVG 133
           TGSGKTLA+ +P+VQ L SR V  +RALVVLPT++LA QV +VF     A  L V L  G
Sbjct: 258 TGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTG 317

Query: 134 QSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQH 193
           Q S+A E   L+++             ++   +   DI+VATPGRL+DHI+ T GF+LQ 
Sbjct: 318 QKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQ 377

Query: 194 LRYLVIDETDRLLREAYQSWLPTVLQLTHADDD-------------------SIIFPS-- 253
           LR+L+IDE DR++   +QSWLP V+      +D                   S   P   
Sbjct: 378 LRFLIIDEADRMIDSMHQSWLPRVVAAAFQSEDPADPCALLQRRQAQAVTAASTCCPQMP 437

Query: 254 YISLPCSAGSLKTIRRLKEKSVH----LTIKMGHH-------------WFYPSLGLW--- 313
              L  SA   +   +L++  +H     +  + H              + +P +GL    
Sbjct: 438 LQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFP-VGLTHHY 497

Query: 314 -ICESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYS----- 373
             C    KPL ++ L+  +G  + + FT+S E++HRL  L+  F G++  + E+S     
Sbjct: 498 VPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVD--VAEFSSRYGP 557

Query: 374 GLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVI-----WNTKTLN 433
           G +R  L+                   LLIS    A+   ++  + V+        +T  
Sbjct: 558 GQRRMILKQFEQ-----------GKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYV 617

Query: 434 AFRGGEIQVLVSSDAMTRGMDV--RRFKKLLQKADNDSCPIHSLPSSSIELLQPTYVSAL 440
              G   +   +  A T  + V  RRF ++L +A       H L S  ++ L P Y  AL
Sbjct: 618 HRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEAL 660

[Close]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot
Match: Q6DRI7 (ATP-dependent RNA helicase DDX51 OS=Danio rerio OX=7955 GN=ddx51 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.5e-42
Identity = 136/430 (31.63%), Postives = 192/430 (44.65%), Query Frame = 0


Query: 14  PLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQE---------TIGPGSF-DRDLCINSP 73
           P+  +P + P L   LQ  G+ S FPVQ  V             +GPG +  RD+C+++P
Sbjct: 189 PISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAP 248

Query: 74  TGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVG 133
           TGSGKTLA+ +P+VQ LS R V+ +RAL VLPT++LA QV  VF+A      L V +  G
Sbjct: 249 TGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITG 308

Query: 134 QSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQH 193
           Q S A E + L    ++  G+ +          S  DI+VATPGRL+DHIN    F+LQH
Sbjct: 309 QKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQH 368

Query: 194 LRYLVIDETDRLLREAYQSWLPTVLQL---THADDDSIIFPSYISLPCSAGSLK------ 253
           LR+L+IDE DR++   +QSWL  V +    T  +  + +F   +  P +A SL       
Sbjct: 369 LRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGETHTSVFRRTVPGPITAASLSPPQIPL 428

Query: 254 -------TIRRLKEKSVHLTI----------------KMGHHWFYPSLGL----WICESK 313
                  T+ +  EK   L +                      F+   GL      C   
Sbjct: 429 QKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFS 488

Query: 314 LKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLRSLG 373
            KPL ++  L  L     + FT+S E  HRL  L+  F G+E  + E+S       R   
Sbjct: 489 KKPLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFGGVE--VAEFSSKLSPGERQ-- 548

Query: 374 TSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSSDAM 398
                                                   KTL  F  G+I +L+S+DA 
Sbjct: 549 ----------------------------------------KTLKDFEKGKIPLLISTDAA 561

[Close]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot
Match: Q6P9R1 (ATP-dependent RNA helicase DDX51 OS=Mus musculus OX=10090 GN=Ddx51 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-40
Identity = 146/499 (29.26%), Postives = 223/499 (44.69%), Query Frame = 0


Query: 14  PLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQE---------TIGPGSFD-RDLCINSP 73
           P+E +P + P L+  L+  G++S FPVQ AV             IG G +   DLC+++P
Sbjct: 170 PIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAP 229

Query: 74  TGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVG 133
           TGSGKTLA+ +P+VQ L  R V  +RALVVLPT++LA QV +VF        L V L  G
Sbjct: 230 TGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTG 289

Query: 134 QSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQH 193
           Q S+A E   L+++             ++   +   DI+VATPGRL+DHI+ T GF+LQ 
Sbjct: 290 QKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQ 349

Query: 194 LRYLVIDETDRLLREAYQSWLPTVL----------------------QLTHADD------ 253
           LR+L+IDE DR++   +QSWLP V+                       LT A        
Sbjct: 350 LRFLIIDEADRMIDSMHQSWLPRVVAAAFYSEGPTGSCALLQRTQPQALTAASTCVPQMP 409

Query: 254 -DSIIF------------------PSYISLPCSAGSLKTIRRLKEKSVHLTIKMG-HHWF 313
              ++F                  P   S      S K    + E S   T  +G  H +
Sbjct: 410 LQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHY 469

Query: 314 YPSLGLWICESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGL---ELKI 373
            P      C    KPL ++ L+  +   + + FT+S E++HRL  L   F G+   E   
Sbjct: 470 VP------CRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGGVSVAEFSS 529

Query: 374 KEYSGLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVI-----WNT 433
           +   G +++ L+                   LLIS    A+   ++  + VI        
Sbjct: 530 RYGPGQRKKILKQFEQ-----------GKIQLLISTDATARGIDVQGVELVINYDAPQYL 589

Query: 434 KTLNAFRGGEIQVLVSSDAMTRGMDV--RRFKKLLQKADNDSCPIHSLPSSSIELLQPTY 445
           +T     G   +   +  A T  + V  R+F +++ +A       H +P   ++ L   Y
Sbjct: 590 RTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARY 638

[Close]

BLAST of Clc01G25450 vs. ExPASy TrEMBL
Match: A0A1S3AZ50 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 1.2e-184
Identity = 382/543 (70.35%), Postives = 393/543 (72.38%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS IEECPLEILP+LD RLKVALQNMG+SSLFPVQLAVWQE IGPGSFDRDLCI
Sbjct: 16  MRSPVDVSLIEECPLEILPMLDHRLKVALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR +KCLRALVVLPTRDLALQVKEVF+AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTIKCLRALVVLPTRDLALQVKEVFSAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEISELIKRPKLEAGICYDPED  V LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISELIKRPKLEAGICYDPEDVLVALQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           L+HLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS PCSAGSLKTIRR  
Sbjct: 196 LKHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPCSAGSLKTIRRFG 255

Query: 241 ----LKEK----------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
                K K          S  LT   G       HH  + + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMILSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPEKLESYMMIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLG EKCIVFTSSVESTHRLCSLLNFF+ LELKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           V+RFKKLLQ
Sbjct: 436 DAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. ExPASy TrEMBL
Match: A0A0A0KNZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 1.3e-183
Identity = 380/543 (69.98%), Postives = 392/543 (72.19%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS IEECPLEILP+LD RLK ALQNMG+SSLFPVQLAVWQE IGPGSFDRDLCI
Sbjct: 16  MRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQEAIGPGSFDRDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF+AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFSAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEISELIKRPKLEAGICYDP+D  VELQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADD SIIFPSYIS PCS GSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNPCSDGSLKTIRRFG 255

Query: 241 ----LKEK----------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
                K K          S  LT   G       HH  + + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPEKLESYMMIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLG EKCIVFTSSVESTHRLCSLLNFF+ LELKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           V+RFKKLLQ
Sbjct: 436 DAMTRGMDVEGVKNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDEVKRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. ExPASy TrEMBL
Match: A0A6J1EFN8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433692 PE=4 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 1.5e-182
Identity = 372/542 (68.63%), Postives = 387/542 (71.40%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS  EECPLEILP LDPRLK ALQNMG+SSLFPVQLAVWQE IGPGSF+RDLCI
Sbjct: 16  MRSPVDVSLFEECPLEILPSLDPRLKAALQNMGISSLFPVQLAVWQEAIGPGSFERDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEI+ LIKRPKLEAGICYDPED SV+LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEIAGLIKRPKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLK 240
           LQHLRYLVIDETDRLLRE+YQSWLPTVLQLTH DD++IIFPSY SLPCSAGSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLRESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGSLKTIRRFG 255

Query: 241 EK----------------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
            +                S  LT   G       H   + + G             + IC
Sbjct: 256 IERGFKGACYPRFSKMVLSATLTQDPGKLAQLDLHRPLFLTTGKRRYKLPEKLESYMTIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLC+LLNFFD L+LKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCTLLNFFDDLQLKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGE+QVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEVQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 464
           DAMTRGMD                                           VRRFKKLLQ
Sbjct: 436 DAMTRGMDVEGVRNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLCKDEVRRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. ExPASy TrEMBL
Match: A0A6J1KPB8 (DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC111497067 PE=4 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 6.9e-180
Identity = 369/540 (68.33%), Postives = 384/540 (71.11%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS  EECPLEILP LDPRLK ALQNMG+SSLFPVQLAVWQE IGPGSF+RDLCI
Sbjct: 16  MRSPVDVSLFEECPLEILPSLDPRLKAALQNMGISSLFPVQLAVWQEAIGPGSFERDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSR VKCLRALVVLPTRDLALQVKEVF AIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEI+ LIKRPKLEAGICYDPED SV+LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEIAGLIKRPKLEAGICYDPEDFSVQLQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLK 240
           LQHL YLVIDETDRLLRE+YQSWLPTVLQLTH DD++IIFPSY SLPCSAG LKTIRR  
Sbjct: 196 LQHLCYLVIDETDRLLRESYQSWLPTVLQLTHVDDENIIFPSYTSLPCSAGFLKTIRRFG 255

Query: 241 EK----------------SVHLTIKMG-------HHWFYPSLG-------------LWIC 300
            +                S  LT   G       H   + + G             + IC
Sbjct: 256 IERGFKGACYPRFSKMVLSATLTQDPGKLAQLDLHRPLFLTTGKRRYKLPEKLESYMTIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLC+LLNFFD L+LKIKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCTLLNFFDDLQLKIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 462
           DAMTRGMD                                           VRRFKKLLQ
Sbjct: 436 DAMTRGMDVEGVRNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLSKDGVRRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. ExPASy TrEMBL
Match: A0A6J1CZ56 (DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015817 PE=4 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 6.9e-180
Identity = 367/540 (67.96%), Postives = 384/540 (71.11%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MRSPVDVS  EECPLEILPLLDPRLKVALQ  G++S+FPVQLAVW E IGPGSF+RDLCI
Sbjct: 16  MRSPVDVSLFEECPLEILPLLDPRLKVALQKTGIASIFPVQLAVWLEVIGPGSFERDLCI 75

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL
Sbjct: 76  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 135

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIADEIS LIKRPK EAGICYDPED SV LQSSVDILVATPGRLMDHIN TKGFT
Sbjct: 136 AVGQSSIADEISGLIKRPKFEAGICYDPEDFSVPLQSSVDILVATPGRLMDHINFTKGFT 195

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRR-- 240
           LQHLRYLVIDETDRLLRE+YQSWLPTVLQLT ADDD+IIFPSY SLPCSAGSLKTIRR  
Sbjct: 196 LQHLRYLVIDETDRLLRESYQSWLPTVLQLTRADDDNIIFPSYTSLPCSAGSLKTIRRFG 255

Query: 241 ----LKEKSVHLTIKMG-----------------HHWFYPSLG-------------LWIC 300
                K K      KM                  HH  + + G             + IC
Sbjct: 256 VERGFKGKPYPRLAKMVLSATLTQDPSKLSQLDLHHPLFLTTGKRRYKLPEKLESYMMIC 315

Query: 301 ESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLR 360
           ESKLKPLYLV+LLQSLGGEKCIVFTSSVESTHRLC+LLNFFD L+L IKEYSGLQRQSLR
Sbjct: 316 ESKLKPLYLVSLLQSLGGEKCIVFTSSVESTHRLCTLLNFFDDLQLNIKEYSGLQRQSLR 375

Query: 361 SLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSS 420
           S                                          KTLNAFRGGEIQVLVSS
Sbjct: 376 S------------------------------------------KTLNAFRGGEIQVLVSS 435

Query: 421 DAMTRGMD-------------------------------------------VRRFKKLLQ 462
           DAMTRGMD                                           VRRFKKLLQ
Sbjct: 436 DAMTRGMDVEGVRNVINYDMPAFIKTYIHRAGRTARAGQSGRCFTLLSKDEVRRFKKLLQ 495

[Close]

BLAST of Clc01G25450 vs. TAIR 10
Match: AT4G15850.1 (RNA helicase 1 )

HSP 1 Score: 486.9 bits (1252), Expect = 2.5e-137
Identity = 282/523 (53.92%), Postives = 334/523 (63.86%), Query Frame = 0


Query: 1   MRSPVDVSQIEECPLEILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCI 60
           MR+PVDVS +E C L+ LP L+P+LK AL+NMG+SSLFPVQ+AVW ETIGPG F+RD+C+
Sbjct: 18  MRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICV 77

Query: 61  NSPTGSGKTLAYALPIVQMLSSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGL 120
           NSPTGSGKTL+YALPIVQ+L+SR V+CLRALVVLPTRDLALQVK+VF AIAPAVGLSVG 
Sbjct: 78  NSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGS 137

Query: 121 AVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFT 180
           AVGQSSIA EIS+LIK PKL+AGICYDP+D S  L+S+VDILVATPGRLMDHIN TKGFT
Sbjct: 138 AVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFT 197

Query: 181 LQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYIS-LPCSAGSLKTIRR- 240
           L+HLRYLV+DETDRLLREAYQSWLPTVLQLT   DDS +FPS+   +P + GSL+T+RR 
Sbjct: 198 LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDS-LFPSFTPFVPSAFGSLQTVRRQ 257

Query: 241 -----LKEKSVHLTIKMG-----------------HHWFYPSLG-------------LWI 300
                 K K     +KM                  HH  + + G               I
Sbjct: 258 SVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLI 317

Query: 301 CESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSL 360
           CE+ +KP+YLVALL+S  GEKCI+FTSSVE+T RLC LLNFF   ++K KEYSG   QSL
Sbjct: 318 CETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSL 377

Query: 361 RSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVS 420
           RS                                          K L AFR G+IQVLV+
Sbjct: 378 RS------------------------------------------KELKAFRKGDIQVLVA 437

Query: 421 SDAMTRGMD-------------------------------------------VRRFKKLL 444
           SDA+TRGMD                                           VRRF KLL
Sbjct: 438 SDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLL 497

[Close]

BLAST of Clc01G25450 vs. TAIR 10
Match: AT5G60990.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-24
Identity = 96/354 (27.12%), Postives = 151/354 (42.66%), Query Frame = 0


Query: 56  RDLCINSPTGSGKTLAYALPIVQML-----------SSRAVKCLRALVVLPTRDLALQVK 115
           +D+   + TGSGKT A+A+PI+Q L             R      A V+ PTR+LA+Q+ 
Sbjct: 47  KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106

Query: 116 EVFTAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDSSVELQSSVDILVA 175
           E F A+   + L   + VG      +   L KRP                      ++VA
Sbjct: 107 EQFEALGADISLRCAVLVGGIDRMQQTIALGKRP---------------------HVIVA 166

Query: 176 TPGRLMDHINLTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDDSIIFPSYI 235
           TPGRL DH++ TKGF+L+ L+YLV+DE DRLL E ++  L  +L+    +  + +F    
Sbjct: 167 TPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF---- 226

Query: 236 SLPCSAGSLKTIRRLKEKSVHLTIKMGHHWFYPSLGLW-----ICESKLKPLYLVALLQS 295
               SA   K +R+L+   +   +K+     Y ++           +K K  YLV +L  
Sbjct: 227 ----SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSE 286

Query: 296 LGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIKEYSGLQRQSLRSLGTSLNFLDYDSWF 355
           +     ++FT + + T  L  +                     LRSLG            
Sbjct: 287 MPESTSMIFTRTCDGTRFLALV---------------------LRSLG------------ 326

Query: 356 SDTALLISVPVCAQATYIRNCDFVIWNTKTLNAFRGGEIQVLVSSDAMTRGMDV 394
                  ++P+  Q T  +           LN F+ GE  +LV +D  +RG+D+
Sbjct: 347 -----FRAIPISGQMTQSKRLG-------ALNKFKAGECNILVCTDVASRGLDI 326

[Close]

BLAST of Clc01G25450 vs. TAIR 10
Match: AT3G18600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-19
Identity = 84/351 (23.93%), Postives = 158/351 (45.01%), Query Frame = 0


Query: 21  LDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCINSPTGSGKTLAYALPIVQML 80
           L  +  +A++ MG   +  +Q      +I P    +D+   + TGSGKTLA+ +P V++L
Sbjct: 96  LSEQTSIAIKEMGFQYMTQIQAG----SIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL 155

Query: 81  SSRAVKCLR---ALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELIKR 140
                        +V+ PTR+LA+Q K V   +      +V + +G ++   E       
Sbjct: 156 FKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSE------- 215

Query: 141 PKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQHLRYLVIDETDRLLR 200
                         +  + S  ++++ATPGRL+DH+  TK F  +HL+ LVIDE DR+L 
Sbjct: 216 --------------AQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILE 275

Query: 201 EAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLKEKS-VHLTIKMGHHWFY 260
           E ++  +  +L++      + +F +          +K + R+   S VH+ +  G     
Sbjct: 276 ENFEEDMNKILKILPKTRQTALFSA-----TQTSKVKDLARVSLTSPVHVDVDDGRRKVT 335

Query: 261 P---SLGLWICESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNFFDGLELKIK 320
                 G  +  SK + + L++ L+    +K +VF S+ +S      ++   D   + + 
Sbjct: 336 NEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISD---VDVS 395

Query: 321 EYSGLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVI 365
           +  G   Q+ R    +  F D+    +   +L+   V A+   I + D++I
Sbjct: 396 DIHGGMDQNRR----TKTFFDFMK--AKKGILLCTDVAARGLDIPSVDWII 407

[Close]

BLAST of Clc01G25450 vs. TAIR 10
Match: AT5G65900.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-19
Identity = 96/359 (26.74%), Postives = 167/359 (46.52%), Query Frame = 0


Query: 16  EILPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCINSPTGSGKTLAYALP 75
           E L L D   K +++ MG + +  +Q     + I P     D+   + TGSGKTLA+ +P
Sbjct: 157 ESLSLSDNTYK-SIKEMGFARMTQIQ----AKAIPPLMMGEDVLGAARTGSGKTLAFLIP 216

Query: 76  IVQML---SSRAVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEIS 135
            V++L             LV+ PTR+LA+Q   V   +      +VG  +G         
Sbjct: 217 AVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGG-------- 276

Query: 136 ELIKRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQHLRYLVIDET 195
              ++ K EA I          L   V++LVATPGRL+DH+  T GF  ++L++LV+DE 
Sbjct: 277 ---EKRKTEAEI----------LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEA 336

Query: 196 DRLLREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLKEKS-VHLTIKMG 255
           DR+L + ++  L  +L L      + +F +       +  ++ + R+   S V++ +  G
Sbjct: 337 DRILEQNFEEDLKKILNLLPKTRQTSLFSA-----TQSAKVEDLARVSLTSPVYIDVDEG 396

Query: 256 HHWFYP---SLGLWICESKLKPLYLVALLQSLGGEKCI-VFTSSVESTHRLCSLLNF--F 315
                      G  +  S ++ L+L+  L+   G+K I VF S+ +ST     L  +  F
Sbjct: 397 RKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKF 456

Query: 316 DGLELKIKEYSGLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVI 365
           D LE++     G+ +   +   T L F+      ++T +L+   V A+     + D+++
Sbjct: 457 DCLEIR----GGIDQN--KRTPTFLQFIK-----AETGILLCTNVAARGLDFPHVDWIV 473

[Close]

BLAST of Clc01G25450 vs. TAIR 10
Match: AT4G16630.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-19
Identity = 99/405 (24.44%), Postives = 167/405 (41.23%), Query Frame = 0


Query: 18  LPLLDPRLKVALQNMGVSSLFPVQLAVWQETIGPGSFDRDLCINSPTGSGKTLAYALPIV 77
           L L  P L+ A + +G     P+Q A     I      RDLC ++ TGSGKT A+ALP +
Sbjct: 172 LNLSRPLLR-ACETLGYKKPTPIQAA----CIPLALTGRDLCASAITGSGKTAAFALPTL 231

Query: 78  QMLSSR--AVKCLRALVVLPTRDLALQVKEVFTAIAPAVGLSVGLAVGQSSIADEISELI 137
           + L  R   V   R L++ PTR+LA+Q+  +   +A    +  GL VG  S+ ++     
Sbjct: 232 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ----- 291

Query: 138 KRPKLEAGICYDPEDSSVELQSSVDILVATPGRLMDHINLTKGFTLQHLRYLVIDETDRL 197
                            V L+S  DI+VATPGR++DH+  +    L  L  L++DE DRL
Sbjct: 292 ----------------EVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 351

Query: 198 LREAYQSWLPTVLQLTHADDDSIIFPSYISLPCSAGSLKTIRRLKEKSVHLTIKMGHHWF 257
           L+  + + +  +++L      +++F        SA   + ++ L + S++  +++     
Sbjct: 352 LQTGFATEITELVRLCPKRRQTMLF--------SATMTEEVKELVKLSLNKPLRLSAD-- 411

Query: 258 YPS-----------LGLWICESKLKPLYLVALLQSLGGEKCIVFTSSVESTHRLCSLLNF 317
            PS           + +       +   L++L       K I+F+ + ++ HRL  L   
Sbjct: 412 -PSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGL 471

Query: 318 FDGLELKIKEYSGLQRQSLRSLGTSLNFLDYDSWFSDTALLISVPVCAQATYIRNCDFVI 377
                      +GL+   L    T    LD                              
Sbjct: 472 -----------AGLKAAELHGNLTQAQRLD------------------------------ 490

Query: 378 WNTKTLNAFRGGEIQVLVSSDAMTRGMDVRRFKKLLQKADNDSCP 410
               +L  FR  E+  L+++D   RG+D+      +Q   N +CP
Sbjct: 532 ----SLELFRKQEVDFLIATDVAARGLDIIG----VQTVINYACP 490

The following BLAST results are available for this feature:

BLAST of Clc01G25450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881724.1	2.7e-186	71.27	DEAD-box ATP-dependent RNA helicase 1 [Benincasa hispida]	[more]
XP_008439599.1	2.5e-184	70.35	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo]	[more]
XP_004134588.1	2.8e-183	69.98	DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus] >KGN49421.1 hypothetical...	[more]
XP_022926614.1	3.1e-182	68.63	DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-...	[more]
XP_023517664.1	1.2e-181	68.63	DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665...	[more]

BLAST of Clc01G25450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7FGZ2	3.5e-136	53.92	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana OX=3702 GN=RH1 PE=...	[more]
Q0DWT8	2.0e-112	46.17	DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q8N8A6	6.9e-44	31.02	ATP-dependent RNA helicase DDX51 OS=Homo sapiens OX=9606 GN=DDX51 PE=1 SV=3	[more]
Q6DRI7	6.5e-42	31.63	ATP-dependent RNA helicase DDX51 OS=Danio rerio OX=7955 GN=ddx51 PE=2 SV=1	[more]
Q6P9R1	6.1e-40	29.26	ATP-dependent RNA helicase DDX51 OS=Mus musculus OX=10090 GN=Ddx51 PE=1 SV=1	[more]

BLAST of Clc01G25450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZ50	1.2e-184	70.35	DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE...	[more]
A0A0A0KNZ7	1.3e-183	69.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1	[more]
A0A6J1EFN8	1.5e-182	68.63	DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita moschata OX=3662 GN=LOC111433...	[more]
A0A6J1KPB8	6.9e-180	68.33	DEAD-box ATP-dependent RNA helicase 1 OS=Cucurbita maxima OX=3661 GN=LOC11149706...	[more]
A0A6J1CZ56	6.9e-180	67.96	DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Momordica charantia OX=3673 ...	[more]

BLAST of Clc01G25450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15850.1	2.5e-137	53.92	RNA helicase 1	[more]
AT5G60990.1	1.6e-24	27.12	DEA(D/H)-box RNA helicase family protein	[more]
AT3G18600.1	1.6e-19	23.93	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G65900.1	2.1e-19	26.74	DEA(D/H)-box RNA helicase family protein	[more]
AT4G16630.1	2.7e-19	24.44	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 33..315 e-value: 1.5E-24 score: 97.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 49..250 score: 18.594679
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 260..422 e-value: 2.6E-11 score: 45.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..250 e-value: 8.2E-51 score: 174.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 19..212
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 181..395
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 39..211 e-value: 7.6E-32 score: 110.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 439..465
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 19..397
None	No IPR available	PANTHER	PTHR24031:SF68	ATP-DEPENDENT RNA HELICASE DDX51	coord: 19..397
None	No IPR available	CDD	cd17956	DEADc_DDX51	coord: 25..217 e-value: 3.90784E-82 score: 256.405

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G25450.2	Clc01G25450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding