Clc01G23375 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G23375
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glucose-fructose oxidoreductase domain-containing protein 2, putative
Location	ClcChr01: 34171703 .. 34171984 (+)
RNA-Seq Expression	Clc01G23375
Synteny	Clc01G23375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAACGGAGGCAAGCAGCAGTTCAAGTTCCAGTATGATCCTTGCAGCTACGCTCTAAACTTTGATGATGGATTTTGCAAATTTGAAGCTGTCGCAACTGAAACACCTGCAAAACTTCAAACTTGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGA

mRNA sequence

ATGGGCTTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAACGGAGGCAAGCAGCAGTTCAAGTTCCAGTATGATCCTTGCAGCTACGCTCTAAACTTTGATGATGGATTTTGCAAATTTGAAGCTGTCGCAACTGAAACACCTGCAAAACTTCAAACTTGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGA

Coding sequence (CDS)

ATGGGCTTTGTGGGAGGCATAGAATGGATGAATACTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCTGCGATGAAGAAAGCCATCAAGAACGGAGGCAAGCAGCAGTTCAAGTTCCAGTATGATCCTTGCAGCTACGCTCTAAACTTTGATGATGGATTTTGCAAATTTGAAGCTGTCGCAACTGAAACACCTGCAAAACTTCAAACTTGTTCAAATTTGAATCACTCTGCCATGTGGGTTTTTGTACTTTTGGTGAAATCTGAGTGA

Protein sequence

MGFVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIKNGGKQQFKFQYDPCSYALNFDDGFCKFEAVATETPAKLQTCSNLNHSAMWVFVLLVKSE

Homology

[Close]

BLAST of Clc01G23375 vs. NCBI nr
Match: KAG6594620.1 (hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 15  RKQFRKLFWRMRAAMKKAIKNGGKQQFKFQYDPCSYALNFDDGFCKFEAVATETPAKLQT 74
           RKQFRKLFWRMRAAMKKAIKNGGK++F FQYDPCSYALNFDDGFCKFEAVA E PAK+Q 
Sbjct: 89  RKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCKFEAVAPEEPAKIQI 148

Query: 75  CSNLNHSAMWVFVLLVKSE 94
            SNLNHS MWVFVLLVKSE
Sbjct: 149 SSNLNHSPMWVFVLLVKSE 167

[Close]

BLAST of Clc01G23375 vs. NCBI nr
Match: KAF3451534.1 (hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis])

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-23
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MGFVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIKNGGKQQFKFQYDPCSYALNFDDGFCK 60
          MG +  + W+NTYSRK  R LFWR+RAA+KKA+KNGGKQQ +FQYDPCSYALNFDDG CK
Sbjct: 5  MGLIASLVWVNTYSRKHCRSLFWRVRAALKKAVKNGGKQQIRFQYDPCSYALNFDDGGCK 64

Query: 61 F-EAVATETPAKLQTCSNLNHSAMWVFVLLVKSE 94
            EA  T +      C +   ++ WV+VL VK++
Sbjct: 65 LGEAQTTPSQHAKHQCHSDTKNSKWVYVLWVKAD 98

[Close]

BLAST of Clc01G23375 vs. NCBI nr
Match: MBA0565621.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EAVA-TETPAKLQTCSNLNHSAMWVFVLLVKS 93
             A T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEANTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. NCBI nr
Match: MBA0720377.1 (hypothetical protein [Gossypium laxum] >MBA0836705.1 hypothetical protein [Gossypium armourianum] >MBA0867048.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. NCBI nr
Match: MBA0745612.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. ExPASy TrEMBL
Match: A0A7J9CAV6 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_008183 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. ExPASy TrEMBL
Match: A0A7J9JRA6 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_008900 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. ExPASy TrEMBL
Match: A0A7J9M7X9 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_026725 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. ExPASy TrEMBL
Match: A0A7J8MLK3 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EAVA-TETPAKLQTCSNLNHSAMWVFVLLVKS 93
             A T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEANTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. ExPASy TrEMBL
Match: A0A7J9A8H8 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_007999 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 3  FVGGIEWMNTYSRKQFRKLFWRMRAAMKKAIK-NGGKQQFKFQYDPCSYALNFDDGFCKF 62
          F+G +EW+N+Y +KQ R LFWR +AAMKKA+K  G K+QFKFQYDP SYALNFDDG+C  
Sbjct: 7  FMGKLEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHS 66

Query: 63 EA-VATETPAKLQTCSNLNHSAMWVFVLLVKS 93
             V T   A++Q CS   +  +WV+VL VKS
Sbjct: 67 GVEVNTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Clc01G23375 vs. TAIR 10
Match: AT1G11112.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 8  EWMNTYSRKQFRKLFWRMRAAMKKAIKNGGKQQFKFQYDPCSYALNFDDGFCKFEAVATE 67
          E +N Y +K FR    RM+AA+KK  K   K+Q  FQYDP SYALNFDDG         E
Sbjct: 8  EAVNQYRKKMFR----RMKAAVKKTKK---KKQTMFQYDPWSYALNFDDG--------VE 67

Query: 68 TPAKLQ-TCSNLNHSAMWVFVLLVK 92
           P +    C+   H    ++V+ VK
Sbjct: 68 NPQRFSGDCNCKLHRITLIYVVSVK 77

The following BLAST results are available for this feature:

BLAST of Clc01G23375 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594620.1	1.5e-32	88.61	hypothetical protein SDJN03_11173, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3451534.1	4.8e-23	57.45	hypothetical protein FNV43_RR07629 [Rhamnella rubrinervis]	[more]
MBA0565621.1	1.7e-20	57.61	hypothetical protein [Gossypium lobatum]	[more]
MBA0720377.1	1.7e-20	57.61	hypothetical protein [Gossypium laxum] >MBA0836705.1 hypothetical protein [Gossy...	[more]
MBA0745612.1	1.7e-20	57.61	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of Clc01G23375 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G23375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9CAV6	8.3e-21	57.61	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_008183 PE=4 ...	[more]
A0A7J9JRA6	8.3e-21	57.61	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_008900 PE=4 S...	[more]
A0A7J9M7X9	8.3e-21	57.61	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_026725 PE=4...	[more]
A0A7J8MLK3	8.3e-21	57.61	Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1	[more]
A0A7J9A8H8	8.3e-21	57.61	Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_007999 PE=4 SV=1	[more]

BLAST of Clc01G23375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11112.1	1.8e-07	42.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538:SF10	OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2, PUTATIVE-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G23375.1	Clc01G23375.1	mRNA