Clc01G22530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G22530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Location	ClcChr01: 33645793 .. 33646213 (+)
RNA-Seq Expression	Clc01G22530
Synteny	Clc01G22530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATATCCACCAAGAGACAATACAAATTCAATTCTTACCAAACACATGGGTAACTGTTGCAGAAGTCAATCCTCCATTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAGGAACCACCGTCAGAGAAAGCCTAGAGGTAGTTCTCATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTAAAAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGAAGTACGTATATGTAA

mRNA sequence

CATATATCCACCAAGAGACAATACAAATTCAATTCTTACCAAACACATGGGTAACTGTTGCAGAAGTCAATCCTCCATTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAGGAACCACCGTCAGAGAAAGCCTAGAGGTAGTTCTCATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTAAAAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGAAGTACGTATATGTAA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAAGTCAATCCTCCATTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAGGAACCACCGTCAGAGAAAGCCTAGAGGTAGTTCTCATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTAAAAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

Protein sequence

MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQRSWRPSLQSIPEII

Homology

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BLAST of Clc01G22530 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38
Identity = 88/120 (73.33%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCC+ Q S P     +RRTPP +NHRQR+    S  CS      KE NL+EVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

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BLAST of Clc01G22530 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-36
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCCR QSS P +  G+RR  P +N RQR+    S  CS+T K  KEGNL+E+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGS--CSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVN+ISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

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BLAST of Clc01G22530 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCCR QSS P +   NRR  P +N RQR+   SS  CS+T K  KEGN++E+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASS--CSTTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQ 120

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BLAST of Clc01G22530 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCCR QSS P +   NRR  P +N RQR+   SS  CS+T K  KEGN++E+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASS--CSTTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

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BLAST of Clc01G22530 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 84/126 (66.67%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCCR QSS P +  G+RR  P +N  QR  R  ++ CS+T K  KEGNL+E+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQR--RHGANSCSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+ NG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

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BLAST of Clc01G22530 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 88/120 (73.33%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCC+ Q S P     +RRTPP +NHRQR+    S  CS      KE NL+EVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Clc01G22530 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 88/120 (73.33%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCC+ Q S P     +RRTPP +NHRQR+    S  CS      KE NL+EVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Clc01G22530 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCCR QSS P +  G+RR  P +N RQR+    S  CS+T K  KEGNL+E+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGS--CSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVN+ISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of Clc01G22530 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 1   MGNCCRSQSSIPAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNLKEVKIRMTK 60
           MGNCC++QSS P ME  +  TPP++NH QR+ +  S          KE NL+EVKIRMTK
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS---------SKETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KEL+ELVGWLNMADSSFE VMARLVN+I+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 61  KELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of Clc01G22530 vs. ExPASy TrEMBL
Match: A0A200QLU8 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 1   MGNCCRSQSSI--PAMEYGNRRTPPWRNHRQRKPRGS-----SHYCSSTHKDPKEGNLK- 60
           MGNCCR +SS      ++G  ++  +     +    S      +  S TH   +  N K 
Sbjct: 1   MGNCCRHESSTTWAGDDWGTPKSETFTKEMSKTSTTSEENEEKNLLSCTHHQHENDNQKN 60

Query: 61  ----------EVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKL 119
                     EVKIR+TKKELEEL+G +++   S E ++A+L+N  SD +  +       
Sbjct: 61  GKSSSSSSSTEVKIRITKKELEELLGKIDVQGLSVEQIIAQLMNSTSDDDQYH------- 120

[Close]

BLAST of Clc01G22530 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06
Identity = 40/130 (30.77%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 1   MGNCCRSQSSI--PAMEYGNRRTPPWRNHRQRKPRGSSHYCSSTHKDPKEGNL------- 60
           MGNC R +S +     ++    T    +H         HY S T +D K   +       
Sbjct: 1   MGNCLRHESEMHWAGEDWDEFITEDEEDH---------HYSSKTTRDGKPVIVTRDSKSS 60

Query: 61  ---KEVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQRSW 119
               E+KIR+TKK+L +L+  +N+ D +F+        +       NN    +  QQR W
Sbjct: 61  VPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPIL-------NNRGYEEANQQRLW 114

[Close]

BLAST of Clc01G22530 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 37/131 (28.24%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 1   MGNC-CRSQSSIPAMEYGNRRTPPWRNHRQR------------KPRGSSHYCSSTHKDPK 60
           MGNC C ++ +  +    +  +   R  R+R            K  G +   +ST     
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTST-SSSS 60

Query: 61  EGNLKEVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQRS 119
               +E+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +   +    Q   
Sbjct: 61  SSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ--P 120

The following BLAST results are available for this feature:

BLAST of Clc01G22530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441100.1	5.2e-38	73.33	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	3.7e-36	69.84	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
KAG6603773.1	2.4e-35	68.25	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	2.4e-35	68.25	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023544016.1	2.0e-34	66.67	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc01G22530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G22530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNX5	2.5e-38	73.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	2.5e-38	73.33	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	1.8e-36	69.84	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A0A0KHU7	2.2e-34	68.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A200QLU8	2.1e-08	36.03	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1	[more]

BLAST of Clc01G22530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20340.1	7.3e-06	30.77	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]
AT4G21920.1	3.1e-04	28.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G22530.1	Clc01G22530.1	mRNA