Clc01G13830 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G13830
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionENDO3c domain-containing protein
LocationClcChr01: 26699225 .. 26702867 (-)
RNA-Seq ExpressionClc01G13830
SyntenyClc01G13830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATTGACCCGTATCCGGCTCATTCTTCGCCCACTTCGGACGAATGTCTGTCCGTGAGGGACGATCTGTTGAATCTTCATGGTTTCCCTCGAGAGTTTCTTAAGTATCGGAAGCAGCGAGAGAGACTGAGCGAGTGCTGCTCCGACATGGACGGCGGCAGCGGTGAGCACCGGGATAATGTGGAATCGGAGCTCGTCCATGAGAAGGAGAGCGTTTTGGATGGATTGGTGAGGACTGTGCTCTCGCAGAACACTACTGAGGCTAATTCCGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTAACTGGGAGGATGTGAGTCTTCTGCTTTCTTTGATTGGATTTTGTCTGTTCTTTCTTTTCATGTAATGTTCTTGGCATTGATTTCTATCGATTTATTTTTACAATTGAACAGTAATGAATGGGATTTAGAAATTTGAAACTGGATGCTCTTATTTAGTTCTTGTTTGGTGATATTTGTTACACTAATACTTCAAATGTATTGCTATTTGCCTTCTAAGTTAGCTGTTCAGCCAATGTTATCTTTTGATAACTTTGCTATCAGTCTCATATTTGATTTTGAAGTGTCAGTTTAGTAGTTTCTCTTGTGTTTTTCTTGTATTAACTATAACTATGATTCAATTCTGCCCTTAAGCATTTCTATTGTCTGATCATATGAAAATCATCTTTCATAATAAATCTTGCATTTGGTGTAAGTTTAAGGGCAAGCAAAATTGCTACTTGAAATTCAAATTTGGACAATGTGATTAGAGACTTGGGGATATGACAGGAAGAGGAACCTTTAGTAATTTTTTCCTGTAATCTTGAAGTGTGGCTTTTAAGAAAGGGGTTTTGAGTTATGTACTCATATTTTGCTGTAGGTTCTTTTAGCTGAATCCAAATGCATAGAGGATGCCATAAGATGTGGAGGATTAGCACCTACCAAAGCCTCTTGCATAAAAAACATATTGAGTTCTTTGTCAAAGAGAAGAGGCAAACTATGCTTGGAGTATTTGCACGATTTATCCATCGATGAATAAAGGCAGAGCTGTCGACTTTCAAAGGAATTGGCCCCAAAACGGTATTGTTTCTGAAAAGAATAACAACCTTCATTGTCCAATTTGAGTTTAACTTTTTAGATCTTGTTCATGGAGCTATACTATACCCGACATCTCTATCAATTAGGATCCTAGTTGAAGGCTTCTACTGAATTGTTTTTGTTCTTACCACATCTGTTTTGGCTATCTATGGCTGGCATTGTTCACAAAATTCCTGAATGTTAAGGCATCATAGATTATAAACAAGATTGCCTAGTGTTATGACTGCATCAGTAATCAATCATACAAGTTATAAATGGCAGGTGGCCTGTGTTTTGATGTTCAATCTTTAGAAAGATGATTTTCCAGTAGACACCCATGTGAGTAACTGGATTCTTGATTCTGATGAGTTTGTGATCTCTAAAGACCATTGGAAGGTTTTGATTTTCCAACATGTTTGCAGGTCTTTGAGATTGCGAAATTTGCCGGTTGGGTCCCGGATGAGGCAGACAGGAACAAAACATATCTTCATCTTAACTAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACAGTCATGGCAAGGTCTATTCGAAATGTACGAAGAGAACAGGCGGGCGACAACGAAAGGGATCAGAAGATCAGTCTTGTCCCTTGTTCAAGTACTCCAAGAACCCGTAAATTTGTGAATATAAATGTATTTACCAAGAGTTTATTTATGAAAAGCTTCTAATCCTTTTTTGTATCCTCTATTTTGTTCCTACATTGTAGAAAATGCCATGCTACAATAACTGCAATTAAGGATGCTTTTTCGGTTAAGTAGAGTGATTATTCATTTAAGGCCAGTTTTATTATTTTTTTTAATTAAAAAAGCCTTAGACTTTGCCATTCGTTTTTTAAAATATCTTTTATCTTTCAAAAGTTGCAAAGTCAACTTTATGAAATCTATCCTTAAAGTAGAAATTCGATAGGATGTTGGACAAAAATTGAGATTTGTAATGGCACGACAGTGACTGGAAACGAAATTTGGAACTGAACAACACCACACTTGTAACACCGTATCTCAGAACCTAGGTATTCAAGATGGCTAGTAAGGAAAGAAGTAAGATAAAGAGTAATGGAGCTAAGATTATAAAAGTATGTGGAGTAGGGGAACTTTCAAAACGGAAAAGTTAAGTTTGTGGAATTGTTGAATTATGGCCAAGAAATTCTATGCGTTGAGATGAATGGTATTAGAAAAAGAGTGGATGTCTCACCAAGGGTGAGAATGAAGGACTAAAGGTATAGTTGGGAATTAGTTGAAGTTTGATGTATCTTTAGAAGTCAGGGTGACGCATAGATGGTTAAGCTTTAACGCATGGTATTTGATATTGAAGTTTGGAAAAAGGGACACAAGAATTAGGAGGAAGAGGGAAATGCATGGCTCACACTTGATCTTGGAAATTAATAAGCTATGAGAATGATTTTGGAGGGCATTAAGCTAGAAAGAAAAGTGAAGCTGAAGAACCTTAAGGCGTGAGCAGCATGCGTTGAAGGTTTATTATGCGTTAGTAAGGACCTTGGTGTTGGTAAGAAGTCTTCGGGTATATCATAGCAAACGTAGAAAAGGAAGTGTTCCAAGGTAACTAAGCGTTGAGGAGTTTATGCGTTGAAGGTGGATAACAGCTATGCGTTGAAGGTGGATAACAGCTATGCGTTGAGGAGTATGCGTTGAAGGTGGATAATAGCTATGCGTTGAGGAGTTTATGCGTTGAAGGTGGCTATTAGCTATGCGTCACGGGGCTTATGCGTTGAAGGTGGTTACCGTAGGTTGTTAAGGTTATGCGTTGAGGTGCTTAACTCCATGATAAATGGAAATGTAACCTCGATTTCTGGTAAACGCATAGGAAGAAGTTAAGGAAGGAAACGTAGCTTTGGCAAAGGTAGGACGAATAAGCAAGAAGGTATAAAGTTAAGTCATGGAGTGTTAGAAAGAGATCTAAGTGTCATGGATGGAAATAACGCCATTTCAAACCGCGACACAAACGCCCTTGACTCGCCTCGCATTGTCAAGGGAAGGTCGAGAGTGAAGGGCCAAGGCGTTGACAAAACCGCTGCACGAGGATGCCATCGCATGCAGACGGGACGCAAGTGCCATCGGGCCACACCCATGCCTCAGGTGTATGCCTTCGACATAGCCGGATCCCCACCCGAGTGCCTCAACAGACACCTATGTGCGTTGACACATGGCAGAGTGGCTGCGCAGCCAACCATAAGTATGCGGCATGCACGCTCAACTGCAAGGGTGAGTAGCATGACGTGCCCGCATATGCGAAGTTACCAGGTGTGCAAGTTCGACGCATATCCACGATGCATTCAGAGTGGGAACAACGCATGCGCGCCTCGTAAGTGCCAGCAGTGTACGCATATCGTCGACGCCTCATGCGTACACCGCCTAGAGACCATGTGTCCAACTGCATCCTTCGACGCATGGAAAATTCCAGACGCCTTGAGTAAGTCCTGGAAGATTCTAGACGCATCGGGACAAGGCCAGAGACCTCGACAACCCTCTGGACGCGTCTGGAGAGGCGGGCAGGCCGCTGGGTGA

mRNA sequence

ATGTCTATTGACCCGTATCCGGCTCATTCTTCGCCCACTTCGGACGAATGTCTGTCCGTGAGGGACGATCTGTTGAATCTTCATGGTTTCCCTCGAGAGTTTCTTAAGTATCGGAAGCAGCGAGAGAGACTGAGCGAGTGCTGCTCCGACATGGACGGCGGCAGCGGTGAGCACCGGGATAATGTGGAATCGGAGCTCGTCCATGAGAAGGAGAGCGTTTTGGATGGATTGGTGAGGACTGTGCTCTCGCAGAACACTACTGAGGCTAATTCCGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTAACTGGGAGGATAAAGATGATTTTCCAGTAGACACCCATGTGAGTAACTGGATTCTTGATTCTGATGAGTTTGTGATCTCTAAAGACCATTGGAAGGTTTTGATTTTCCAACATGTTTGCAGGTCTTTGAGATTGCGAAATTTGCCGGTTGGGTCCCGGATGAGGCAGACAGGAACAAAACATATCTTCATCTTAACTAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACAGTCATGGCAAGGTCTATTCGAAATGTACGAAGAGAACAGGCGGGCGACAACGAAAGGGATCAGAAGATCAGTCTTGTCCCTTGTTCAAGTACTCCAAGAACCCGTAAATTTGTGAATATAAATGTGGCTATTAGCTATGCGTCACGGGGCTTATGCGTTGAAGGTGGTTACCGTAGGTTGTTAAGGACGAATAAGCAAGAAGGTATAAAGTTAAGTCATGGAGTGTTAGAAAGAGATCTAAGTGTCATGGATGGAAATAACGCCATTTCAAACCGCGACACAAACGCCCTTGACTCGCCTCGCATTGTCAAGGGAAGGTCGAGAGTGAAGGGCCAAGGCGTTGACAAAACCGCTGCACGAGGATGCCATCGCATGCAGACGGGACGCAAGTGCCATCGGGCCACACCCATGCCTCAGGTGTATGCCTTCGACATAGCCGGATCCCCACCCGAGTGCCTCAACAGACACCTATGTGCGTTGACACATGGCAGAGTGGCTGCGCAGCCAACCATAAGTATGCGGCATGCACGCTCAACTGCAAGGGTGAGTAGCATGACGTGCCCGCATATGCGAAGTTACCAGGTGTGCAAGTTCGACGCATATCCACGATGCATTCAGAGTGGGAACAACGCATGCGCGCCTCGTAAGTGCCAGCAGTGTACGCATATCGTCGACGCCTCATGCGTACACCGCCTAGAGACCATGTGTCCAACTGCATCCTTCGACGCATGGAAAATTCCAGACGCCTTGAGTAAGTCCTGGAAGATTCTAGACGCATCGGGACAAGGCCAGAGACCTCGACAACCCTCTGGACGCGTCTGGAGAGGCGGGCAGGCCGCTGGGTGA

Coding sequence (CDS)

ATGTCTATTGACCCGTATCCGGCTCATTCTTCGCCCACTTCGGACGAATGTCTGTCCGTGAGGGACGATCTGTTGAATCTTCATGGTTTCCCTCGAGAGTTTCTTAAGTATCGGAAGCAGCGAGAGAGACTGAGCGAGTGCTGCTCCGACATGGACGGCGGCAGCGGTGAGCACCGGGATAATGTGGAATCGGAGCTCGTCCATGAGAAGGAGAGCGTTTTGGATGGATTGGTGAGGACTGTGCTCTCGCAGAACACTACTGAGGCTAATTCCGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTAACTGGGAGGATAAAGATGATTTTCCAGTAGACACCCATGTGAGTAACTGGATTCTTGATTCTGATGAGTTTGTGATCTCTAAAGACCATTGGAAGGTTTTGATTTTCCAACATGTTTGCAGGTCTTTGAGATTGCGAAATTTGCCGGTTGGGTCCCGGATGAGGCAGACAGGAACAAAACATATCTTCATCTTAACTAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACAGTCATGGCAAGGTCTATTCGAAATGTACGAAGAGAACAGGCGGGCGACAACGAAAGGGATCAGAAGATCAGTCTTGTCCCTTGTTCAAGTACTCCAAGAACCCGTAAATTTGTGAATATAAATGTGGCTATTAGCTATGCGTCACGGGGCTTATGCGTTGAAGGTGGTTACCGTAGGTTGTTAAGGACGAATAAGCAAGAAGGTATAAAGTTAAGTCATGGAGTGTTAGAAAGAGATCTAAGTGTCATGGATGGAAATAACGCCATTTCAAACCGCGACACAAACGCCCTTGACTCGCCTCGCATTGTCAAGGGAAGGTCGAGAGTGAAGGGCCAAGGCGTTGACAAAACCGCTGCACGAGGATGCCATCGCATGCAGACGGGACGCAAGTGCCATCGGGCCACACCCATGCCTCAGGTGTATGCCTTCGACATAGCCGGATCCCCACCCGAGTGCCTCAACAGACACCTATGTGCGTTGACACATGGCAGAGTGGCTGCGCAGCCAACCATAAGTATGCGGCATGCACGCTCAACTGCAAGGGTGAGTAGCATGACGTGCCCGCATATGCGAAGTTACCAGGTGTGCAAGTTCGACGCATATCCACGATGCATTCAGAGTGGGAACAACGCATGCGCGCCTCGTAAGTGCCAGCAGTGTACGCATATCGTCGACGCCTCATGCGTACACCGCCTAGAGACCATGTGTCCAACTGCATCCTTCGACGCATGGAAAATTCCAGACGCCTTGAGTAAGTCCTGGAAGATTCTAGACGCATCGGGACAAGGCCAGAGACCTCGACAACCCTCTGGACGCGTCTGGAGAGGCGGGCAGGCCGCTGGGTGA

Protein sequence

MSIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVESELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWEDKDDFPVDTHVSNWILDSDEFVISKDHWKVLIFQHVCRSLRLRNLPVGSRMRQTGTKHIFILTKGSQIISNLISTVFFTVMARSIRNVRREQAGDNERDQKISLVPCSSTPRTRKFVNINVAISYASRGLCVEGGYRRLLRTNKQEGIKLSHGVLERDLSVMDGNNAISNRDTNALDSPRIVKGRSRVKGQGVDKTAARGCHRMQTGRKCHRATPMPQVYAFDIAGSPPECLNRHLCALTHGRVAAQPTISMRHARSTARVSSMTCPHMRSYQVCKFDAYPRCIQSGNNACAPRKCQQCTHIVDASCVHRLETMCPTASFDAWKIPDALSKSWKILDASGQGQRPRQPSGRVWRGGQAAG
Homology
[Close]
BLAST of Clc01G13830 vs. NCBI nr
Match: XP_038894941.1 (putative DNA glycosylase At3g47830 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-46
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DGG GEHRDNVE
Sbjct: 42  DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSIVDGGRGEHRDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SE V EKESVLDGLVRTVLSQNTTEANSERAF+SLKSAFA WED
Sbjct: 102 SEPVDEKESVLDGLVRTVLSQNTTEANSERAFSSLKSAFATWED 145

[Close]
BLAST of Clc01G13830 vs. NCBI nr
Match: XP_011651429.1 (putative DNA glycosylase At3g47830 [Cucumis sativus] >KGN64289.1 hypothetical protein Csa_013980 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.9e-45
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 2   SIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDN 61
           +IDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DG   EHRDN
Sbjct: 40  TIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDN 99

Query: 62  VESELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           VESE V EKESVLDGLV+TVLSQNTTEANSERAFASLKSAFA WED
Sbjct: 100 VESEFVDEKESVLDGLVKTVLSQNTTEANSERAFASLKSAFAAWED 145

[Close]
BLAST of Clc01G13830 vs. NCBI nr
Match: XP_008438070.1 (PREDICTED: putative DNA glycosylase At3g47830 [Cucumis melo] >TYJ99137.1 putative DNA glycosylase [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 9.4e-43
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DG   EH DNVE
Sbjct: 42  EPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SELV EKESVLDGLV+TVLSQNTTEANSERAF SLKSAF+ WED
Sbjct: 102 SELVVEKESVLDGLVKTVLSQNTTEANSERAFVSLKSAFSTWED 145

[Close]
BLAST of Clc01G13830 vs. NCBI nr
Match: KAA0055207.1 (putative DNA glycosylase [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-41
Identity = 89/104 (85.58%), Postives = 95/104 (91.35%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYP+HSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECC  +DG   EH DNVE
Sbjct: 42  EPYPSHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCFFVDGVRAEHGDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SELV EKESVLDGLV+TVLSQNTTEANSERAF SLKSAF+ WED
Sbjct: 102 SELVVEKESVLDGLVKTVLSQNTTEANSERAFVSLKSAFSTWED 145

[Close]
BLAST of Clc01G13830 vs. NCBI nr
Match: XP_022136993.1 (putative DNA glycosylase At3g47830 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-38
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERL-SECCSDMDGGSGEHRDNV 63
           DPYPAH+SPTSD+CLS+RDDLLNLHGFPREF+KYRK+R+R  SECCS + GG GE  D+V
Sbjct: 38  DPYPAHASPTSDQCLSLRDDLLNLHGFPREFVKYRKERQRRPSECCS-VAGGGGEPHDDV 97

Query: 64  ESELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           +SELV EKESVLDGLVRTVLSQNTTEANSERAFASLKSAFA WED
Sbjct: 98  KSELVDEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFATWED 141

[Close]
BLAST of Clc01G13830 vs. ExPASy Swiss-Prot
Match: F4JCQ3 (Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.3e-22
Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYP    PT++EC  VRD LL+LHGFP EF  YR+QR R      D D      + N++
Sbjct: 30  NPYPTLLRPTAEECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHD-----TQCNLK 89

Query: 64  SELVH--EKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SE ++  E+ESVLDGLV+ +LSQNTTE+NS+RAFASLK+ F  W+D
Sbjct: 90  SETLNETEEESVLDGLVKILLSQNTTESNSQRAFASLKATFPKWDD 130

[Close]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match: A0A0A0LTF1 (ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045870 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-45
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 2   SIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDN 61
           +IDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DG   EHRDN
Sbjct: 40  TIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDN 99

Query: 62  VESELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           VESE V EKESVLDGLV+TVLSQNTTEANSERAFASLKSAFA WED
Sbjct: 100 VESEFVDEKESVLDGLVKTVLSQNTTEANSERAFASLKSAFAAWED 145

[Close]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match: A0A5D3BJ43 (Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003430 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.6e-43
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DG   EH DNVE
Sbjct: 42  EPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SELV EKESVLDGLV+TVLSQNTTEANSERAF SLKSAF+ WED
Sbjct: 102 SELVVEKESVLDGLVKTVLSQNTTEANSERAFVSLKSAFSTWED 145

[Close]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match: A0A1S3AW45 (putative DNA glycosylase At3g47830 OS=Cucumis melo OX=3656 GN=LOC103483287 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.6e-43
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECCS +DG   EH DNVE
Sbjct: 42  EPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SELV EKESVLDGLV+TVLSQNTTEANSERAF SLKSAF+ WED
Sbjct: 102 SELVVEKESVLDGLVKTVLSQNTTEANSERAFVSLKSAFSTWED 145

[Close]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match: A0A5A7UKV1 (Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00480 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-42
Identity = 89/104 (85.58%), Postives = 95/104 (91.35%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYP+HSSPTSDECLSVRDDLLNLHGFPREFLKYRK+RERLSECC  +DG   EH DNVE
Sbjct: 42  EPYPSHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCFFVDGVRAEHGDNVE 101

Query: 64  SELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SELV EKESVLDGLV+TVLSQNTTEANSERAF SLKSAF+ WED
Sbjct: 102 SELVVEKESVLDGLVKTVLSQNTTEANSERAFVSLKSAFSTWED 145

[Close]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match: A0A6J1C919 (putative DNA glycosylase At3g47830 OS=Momordica charantia OX=3673 GN=LOC111008566 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.2e-39
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERL-SECCSDMDGGSGEHRDNV 63
           DPYPAH+SPTSD+CLS+RDDLLNLHGFPREF+KYRK+R+R  SECCS + GG GE  D+V
Sbjct: 38  DPYPAHASPTSDQCLSLRDDLLNLHGFPREFVKYRKERQRRPSECCS-VAGGGGEPHDDV 97

Query: 64  ESELVHEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           +SELV EKESVLDGLVRTVLSQNTTEANSERAFASLKSAFA WED
Sbjct: 98  KSELVDEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFATWED 141

[Close]
BLAST of Clc01G13830 vs. TAIR 10
Match: AT3G47830.1 (DNA glycosylase superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 5.2e-23
Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 4   DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKQRERLSECCSDMDGGSGEHRDNVE 63
           +PYP    PT++EC  VRD LL+LHGFP EF  YR+QR R      D D      + N++
Sbjct: 30  NPYPTLLRPTAEECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHD-----TQCNLK 89

Query: 64  SELVH--EKESVLDGLVRTVLSQNTTEANSERAFASLKSAFANWED 108
           SE ++  E+ESVLDGLV+ +LSQNTTE+NS+RAFASLK+ F  W+D
Sbjct: 90  SETLNETEEESVLDGLVKILLSQNTTESNSQRAFASLKATFPKWDD 130

The following BLAST results are available for this feature:
BLAST of Clc01G13830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894941.15.3e-4692.31putative DNA glycosylase At3g47830 [Benincasa hispida][more]
XP_011651429.15.9e-4589.62putative DNA glycosylase At3g47830 [Cucumis sativus] >KGN64289.1 hypothetical pr... [more]
XP_008438070.19.4e-4387.50PREDICTED: putative DNA glycosylase At3g47830 [Cucumis melo] >TYJ99137.1 putativ... [more]
KAA0055207.11.0e-4185.58putative DNA glycosylase [Cucumis melo var. makuwa][more]
XP_022136993.11.1e-3882.86putative DNA glycosylase At3g47830 [Momordica charantia][more]
BLAST of Clc01G13830 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JCQ37.3e-2253.77Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 ... [more]
BLAST of Clc01G13830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTF12.9e-4589.62ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045870 PE=4... [more]
A0A5D3BJ434.6e-4387.50Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3AW454.6e-4387.50putative DNA glycosylase At3g47830 OS=Cucumis melo OX=3656 GN=LOC103483287 PE=4 ... [more]
A0A5A7UKV15.0e-4285.58Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A6J1C9195.2e-3982.86putative DNA glycosylase At3g47830 OS=Momordica charantia OX=3673 GN=LOC11100856... [more]
BLAST of Clc01G13830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47830.15.2e-2353.77DNA glycosylase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.30Hypothetical protein; domain 2coord: 68..120
e-value: 7.6E-7
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..466
NoneNo IPR availablePANTHERPTHR47203FAMILY NOT NAMEDcoord: 3..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G13830.1Clc01G13830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
molecular_function GO:0019104 DNA N-glycosylase activity