Clc01G12210 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAACGGATTCATAATAACCACAAAATTTAGATATTGTTTCTAAAACCACTCAACAATATTGCACTCCAACCAACAGATCCCCAAAAGAAAGGAACTCGCTTTCTTTAAAGCAATTTCTTTTTTATCAATTCAAACCTCAAAACAATCCCATCTCATCTTCCTCTAATTCTCTTCATTGTCAACCATATAAATAAAACACAGTTTATCAACTCATTTCTCTCTCAATTTCTCTGCAAATACTGCAGAGACTTTTATCCAGCCATGGCTGCTGCCTGTGGAAGCCTACAACACATCTTTGAAAACCCATTACCAGAAAGTCCAACCCTTCTTGAAACTCTCTCATCATGGAACCAGATTATGCCTCTGAAGCCCACCGATCACTCGTCCTTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTTGTTCCTCATTCTTTCTCATCCCTGTCGTCTTTGACAGAATCGAATTCTCCATCTTCCAATGACCTGTGGAAAGAACCATCCTCAAATGGTGAACATGAATGTTCCAGCTTCCATAGAAAGAGCAATAGCTTCTCGTCGACCAACTCGGAAAGCCTGCAACTCTGCACAGAAGGGCTTGGGTATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGGGATGGATGGAGAGGAATGGCAGAGGGAGGATGAGGGAGAAAGGAGCTTAAATAAACAGATTCAGTATCCAAATTTGAAGCCTGGAATGATTTGCAGGACAAAAACAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGGAAGCCTTGGGTTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTAAGAGTTCCCACCCATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTGAAACTGCATATTCTTGTATCAAATGAGCAGACCAGAGAGACCAAGGAAGAAGACAACGACGGCAACAACAAGAACAACCATGAAAATACTATTGGGAAATGCAAGGTTGAAACTAGACCATGATGAGAGGCCATCACTTTCTTAGATAGAATATTTCAAGCTTAGACTTTTCAACTTCCCTAAAATCTGAACCTTTGTTTTCCCTACCTGGTGGTTGATTGCCTTGTTCCCTAGGAATTATCTTGTGTCCAATTCGATTCACTCTAATTTCAGAAACATTTATGTTCTCTGTTTCATATTTTTTACTAAACAGCATCTGGGATTCTGTAGTAATACCAACTGAATTCCATGGGAGCGAAAAAACTTCACGAACACAATAATTAACAATGTTGATCATCAATTCTGAATTGATGATCCTAACCTCTCACAAAATTGGAAGAAGTTTATTTCTAAAGACCATTCTTAATATCTAAAACAAATAGAATATGGAAAACTCCACTATACAGCAAAATAGTCTCTGAAAAGCTGATAATGTTTTTAGAAAATGGCAACATCCCAGGCATTATATTTAGAAAGAGTCAACAAAGTTCAATGAAAGAAACTCAAAGAACATCAGATTTCTCATTTCCTAACCTGGACCATCTA AAAACGGATTCATAATAACCACAAAATTTAGATATTGTTTCTAAAACCACTCAACAATATTGCACTCCAACCAACAGATCCCCAAAAGAAAGGAACTCGCTTTCTTTAAAGCAATTTCTTTTTTATCAATTCAAACCTCAAAACAATCCCATCTCATCTTCCTCTAATTCTCTTCATTGTCAACCATATAAATAAAACACAGTTTATCAACTCATTTCTCTCTCAATTTCTCTGCAAATACTGCAGAGACTTTTATCCAGCCATGGCTGCTGCCTGTGGAAGCCTACAACACATCTTTGAAAACCCATTACCAGAAAGTCCAACCCTTCTTGAAACTCTCTCATCATGGAACCAGATTATGCCTCTGAAGCCCACCGATCACTCGTCCTTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTTGTTCCTCATTCTTTCTCATCCCTGTCGTCTTTGACAGAATCGAATTCTCCATCTTCCAATGACCTGTGGAAAGAACCATCCTCAAATGGTGAACATGAATGTTCCAGCTTCCATAGAAAGAGCAATAGCTTCTCGTCGACCAACTCGGAAAGCCTGCAACTCTGCACAGAAGGGCTTGGGTATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGGGATGGATGGAGAGGAATGGCAGAGGGAGGATGAGGGAGAAAGGAGCTTAAATAAACAGATTCAGTATCCAAATTTGAAGCCTGGAATGATTTGCAGGACAAAAACAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGGAAGCCTTGGGTTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTAAGAGTTCCCACCCATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTGAAACTGCATATTCTTGTATCAAATGAGCAGACCAGAGAGACCAAGGAAGAAGACAACGACGGCAACAACAAGAACAACCATGAAAATACTATTGGGAAATGCAAGGTTGAAACTAGACCATGATGAGAGGCCATCACTTTCTTAGATAGAATATTTCAAGCTTAGACTTTTCAACTTCCCTAAAATCTGAACCTTTGTTTTCCCTACCTGGTGGTTGATTGCCTTGTTCCCTAGGAATTATCTTGTGTCCAATTCGATTCACTCTAATTTCAGAAACATTTATGTTCTCTGTTTCATATTTTTTACTAAACAGCATCTGGGATTCTGTAGTAATACCAACTGAATTCCATGGGAGCGAAAAAACTTCACGAACACAATAATTAACAATGTTGATCATCAATTCTGAATTGATGATCCTAACCTCTCACAAAATTGGAAGAAGTTTATTTCTAAAGACCATTCTTAATATCTAAAACAAATAGAATATGGAAAACTCCACTATACAGCAAAATAGTCTCTGAAAAGCTGATAATGTTTTTAGAAAATGGCAACATCCCAGGCATTATATTTAGAAAGAGTCAACAAAGTTCAATGAAAGAAACTCAAAGAACATCAGATTTCTCATTTCCTAACCTGGACCATCTA ATGGCTGCTGCCTGTGGAAGCCTACAACACATCTTTGAAAACCCATTACCAGAAAGTCCAACCCTTCTTGAAACTCTCTCATCATGGAACCAGATTATGCCTCTGAAGCCCACCGATCACTCGTCCTTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTTGTTCCTCATTCTTTCTCATCCCTGTCGTCTTTGACAGAATCGAATTCTCCATCTTCCAATGACCTGTGGAAAGAACCATCCTCAAATGGTGAACATGAATGTTCCAGCTTCCATAGAAAGAGCAATAGCTTCTCGTCGACCAACTCGGAAAGCCTGCAACTCTGCACAGAAGGGCTTGGGTATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGGGATGGATGGAGAGGAATGGCAGAGGGAGGATGAGGGAGAAAGGAGCTTAAATAAACAGATTCAGTATCCAAATTTGAAGCCTGGAATGATTTGCAGGACAAAAACAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGGAAGCCTTGGGTTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTAAGAGTTCCCACCCATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTGAAACTGCATATTCTTGTATCAAATGAGCAGACCAGAGAGACCAAGGAAGAAGACAACGACGGCAACAACAAGAACAACCATGAAAATACTATTGGGAAATGCAAGGTTGAAACTAGACCATGA MAAACGSLQHIFENPLPESPTLLETLSSWNQIMPLKPTDHSSFTEIFGELHFKESFVPHSFSSLSSLTESNSPSSNDLWKEPSSNGEHECSSFHRKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKGGMDGEEWQREDEGERSLNKQIQYPNLKPGMICRTKTANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVSNEQTRETKEEDNDGNNKNNHENTIGKCKVETRP Homology
BLAST of Clc01G12210 vs. NCBI nr
Match: XP_038894576.1 (uncharacterized protein LOC120083094 [Benincasa hispida]) HSP 1 Score: 433.3 bits (1113), Expect = 1.4e-117 Identity = 226/259 (87.26%), Postives = 237/259 (91.51%), Query Frame = 0
BLAST of Clc01G12210 vs. NCBI nr
Match: XP_008461212.1 (PREDICTED: protein FAF-like, chloroplastic [Cucumis melo] >KAA0035517.1 protein FAF-like [Cucumis melo var. makuwa] >TYK31014.1 protein FAF-like [Cucumis melo var. makuwa]) HSP 1 Score: 431.0 bits (1107), Expect = 7.1e-117 Identity = 222/258 (86.05%), Postives = 236/258 (91.47%), Query Frame = 0
BLAST of Clc01G12210 vs. NCBI nr
Match: XP_004139585.1 (protein FAF-like, chloroplastic [Cucumis sativus] >XP_031739243.1 protein FAF-like, chloroplastic [Cucumis sativus] >KAE8652852.1 hypothetical protein Csa_022731 [Cucumis sativus] >KGN64947.1 hypothetical protein Csa_022859 [Cucumis sativus]) HSP 1 Score: 426.0 bits (1094), Expect = 2.3e-115 Identity = 224/258 (86.82%), Postives = 234/258 (90.70%), Query Frame = 0
BLAST of Clc01G12210 vs. NCBI nr
Match: KAG7012710.1 (hypothetical protein SDJN02_25463, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 357.8 bits (917), Expect = 7.7e-95 Identity = 192/253 (75.89%), Postives = 211/253 (83.40%), Query Frame = 0
BLAST of Clc01G12210 vs. NCBI nr
Match: KAG6573629.1 (hypothetical protein SDJN03_27516, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 357.8 bits (917), Expect = 7.7e-95 Identity = 190/251 (75.70%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy Swiss-Prot
Match: Q6NMR8 (Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana OX=3702 GN=FAF3 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.5e-05 Identity = 51/187 (27.27%), Postives = 90/187 (48.13%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy TrEMBL
Match: A0A5A7T1P9 (Protein FAF-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002630 PE=3 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 3.4e-117 Identity = 222/258 (86.05%), Postives = 236/258 (91.47%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy TrEMBL
Match: A0A1S3CEL7 (protein FAF-like, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499860 PE=3 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 3.4e-117 Identity = 222/258 (86.05%), Postives = 236/258 (91.47%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy TrEMBL
Match: A0A0A0LVU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166760 PE=3 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 1.1e-115 Identity = 224/258 (86.82%), Postives = 234/258 (90.70%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy TrEMBL
Match: A0A6J1CLI0 (protein FANTASTIC FOUR 3-like OS=Momordica charantia OX=3673 GN=LOC111012561 PE=3 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 1.4e-94 Identity = 198/277 (71.48%), Postives = 216/277 (77.98%), Query Frame = 0
BLAST of Clc01G12210 vs. ExPASy TrEMBL
Match: A0A6J1G0A0 (uncharacterized protein LOC111449517 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449517 PE=3 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 2.4e-94 Identity = 188/249 (75.50%), Postives = 208/249 (83.53%), Query Frame = 0
BLAST of Clc01G12210 vs. TAIR 10
Match: AT5G22390.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20 Identity = 84/246 (34.15%), Postives = 112/246 (45.53%), Query Frame = 0
BLAST of Clc01G12210 vs. TAIR 10
Match: AT5G19260.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06 Identity = 51/187 (27.27%), Postives = 90/187 (48.13%), Query Frame = 0
BLAST of Clc01G12210 vs. TAIR 10
Match: AT1G22110.1 (structural constituent of ribosome ) HSP 1 Score: 45.8 bits (107), Expect = 6.0e-05 Identity = 50/179 (27.93%), Postives = 81/179 (45.25%), Query Frame = 0
BLAST of Clc01G12210 vs. TAIR 10
Match: AT5G22090.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04 Identity = 48/192 (25.00%), Postives = 74/192 (38.54%), Query Frame = 0
BLAST of Clc01G12210 vs. TAIR 10
Match: AT5G22090.2 (Protein of unknown function (DUF3049) ) HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04 Identity = 48/192 (25.00%), Postives = 74/192 (38.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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