Clc01G11820 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G11820
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Location	ClcChr01: 18668154 .. 18668779 (-)
RNA-Seq Expression	Clc01G11820
Synteny	Clc01G11820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATGCTGTGTACACGTTCAGACATATGTAGTAGGGATTGTTAGCAGGTTTCAGTCCAACCCTGGATATGATCATTGGACTACTGTTAAAAACATTCTCACGTATCTAAGGAGAATGAGGGACTACATGCTCATGTATGGTGCTAAGAATCTAATCCTTACAAGATTCACTGACTCTAATTTTCAGACCAACATAGATTCAAAGAAATCTACATTGGGATTAGTGTTCACTCTAAATGGAGAAGAAGTAGTATGGAGAAGTATTAAGCAAGGTTGTATTACTAACTATGCCAAGTAGAATACGTAGCTGCTTGTGAAGCAGCAAAAGAAGCAGCATAGCTCAAAAAGTTCTTAGCGGGTCTGGAAGTTGTTCCAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCCAAAGAACCCAGAAGCCATAACGGCAAAAATATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTGACCTAATTGTCAAGCAGATTGCGTTAAAGCAAAACATTTCTGATTCATTTACTAAGGCTCTCATGGCTAAAATGTTTGAGGGTCACCTAGTGAGTCTAGGACTTCAAGTTATGTAA

mRNA sequence

ATGTTATGCTGTGTACACGTTCAGACATATGTAGTAGGGATTGTTAGCAGGTTTCAGTCCAACCCTGGATATGATCATTGGACTACTGTTAAAAACATTCTCACGTATCTAAGGAGAATGAGGGACTACATGCTCATGTATGGTGCTAAGAATCTAATCCTTACAAGATTCACTGACTCTAATTTTCAGACCAACATAGATTCAAAGAAATCTACATTGGGATTAGTGTTCACTCTAAATGGAGAAGAAGTAGTATGGAGAAGTATTAAGCAAGCGGGTCTGGAAGTTGTTCCAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCCAAAGAACCCAGAAGCCATAACGGCAAAAATATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTGACCTAATTGTCAAGCAGATTGCGTTAAAGCAAAACATTTCTGATTCATTTACTAAGGCTCTCATGGCTAAAATGTTTGAGGGTCACCTAGTGAGTCTAGGACTTCAAGTTATGTAA

Coding sequence (CDS)

ATGTTATGCTGTGTACACGTTCAGACATATGTAGTAGGGATTGTTAGCAGGTTTCAGTCCAACCCTGGATATGATCATTGGACTACTGTTAAAAACATTCTCACGTATCTAAGGAGAATGAGGGACTACATGCTCATGTATGGTGCTAAGAATCTAATCCTTACAAGATTCACTGACTCTAATTTTCAGACCAACATAGATTCAAAGAAATCTACATTGGGATTAGTGTTCACTCTAAATGGAGAAGAAGTAGTATGGAGAAGTATTAAGCAAGCGGGTCTGGAAGTTGTTCCAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCCAAAGAACCCAGAAGCCATAACGGCAAAAATATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTGACCTAATTGTCAAGCAGATTGCGTTAAAGCAAAACATTTCTGATTCATTTACTAAGGCTCTCATGGCTAAAATGTTTGAGGGTCACCTAGTGAGTCTAGGACTTCAAGTTATGTAA

Protein sequence

MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDSNFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQAGLEVVPNMHLPITLYCDNSGAVANSKEPRSHNGKNIERKYHLIREIVQRGDLIVKQIALKQNISDSFTKALMAKMFEGHLVSLGLQVM

Homology

[Close]

BLAST of Clc01G11820 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-61
Identity = 136/210 (64.76%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
           MLC      Y VGIVSR+QSNPG DHWT VK IL YLRR RDYML+YGAK+LILT +TDS
Sbjct: 88  MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDS 147

Query: 61  NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
           +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 148 DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 207

Query: 121 -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
             LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 208 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 267

[Close]

BLAST of Clc01G11820 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK +L YLRR RDYML+YGAK+LILT +TDS
Sbjct: 1023 MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDS 1082

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 1083 DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 1142

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1143 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1202

[Close]

BLAST of Clc01G11820 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK +L YLRR RDYML+YGAK+LILT +TDS
Sbjct: 897  MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDS 956

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 957  DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 1016

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1017 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1076

[Close]

BLAST of Clc01G11820 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 3.9e-61
Identity = 136/210 (64.76%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
           MLC      Y VGIVSR+QSNPG DHWTTVK IL YLRR RDYML+YGAK+LILT +TDS
Sbjct: 184 MLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDS 243

Query: 61  NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
           +FQT+ DS+KST G VFTLN   VVWRSIKQ                             
Sbjct: 244 DFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 303

Query: 121 -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
             LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 304 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 363

[Close]

BLAST of Clc01G11820 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.9 bits (616), Expect = 4.3e-60
Identity = 134/210 (63.81%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK IL YLRR RDYML+YGAK+LILT +T+S
Sbjct: 1023 MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTNS 1082

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST   VFTLNG  VVWRSIKQ                             
Sbjct: 1083 DFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLKKFL 1142

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1143 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1202

[Close]

BLAST of Clc01G11820 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-19
Identity = 63/196 (32.14%), Postives = 94/196 (47.96%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            M+C      + VG+VSRF  NPG +HW  VK IL YLR      L +G  + IL  +TD+
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDA 1181

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQ--AGLEVVPNMHLPIT------------- 120
            +   +ID++KS+ G +FT +G  + W+S  Q    L      ++  T             
Sbjct: 1182 DMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFL 1241

Query: 121  -----------LYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIALKQ 170
                       +YCD+  A+  SK    H   K+I+ +YH IRE+V    L V +I+  +
Sbjct: 1242 QELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNE 1301

[Close]

BLAST of Clc01G11820 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 52/198 (26.26%), Postives = 83/198 (41.92%), Query Frame = 0


Query: 9    TYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDY-MLMYGAKNLILTRFTDSNFQTNID 68
            +Y V  +S++   P  DHW  +K +L YL    D+ + +     L L  ++D+++  + D
Sbjct: 1246 SYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTD 1305

Query: 69   SKKSTLGLVFTLNGEEVVWRSIKQAGL---------------------------EVVPNM 128
               ST G +  L    + W S KQ G+                           E+   +
Sbjct: 1306 DYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQL 1365

Query: 129  HLPITLYCDNSGAVANSKEPRSHNG-KNIERKYHLIREIVQRGDLIVKQIALKQNISDSF 178
              P  +YCDN GA      P  H+  K+I   YH IR  VQ G L V  ++    ++D+ 
Sbjct: 1366 SHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTL 1425

[Close]

BLAST of Clc01G11820 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-10
Identity = 56/210 (26.67%), Postives = 91/210 (43.33%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLI----LTR 60
            MLC     T  V I+SR+ S    + W  +K +L YL+   D  L++  KNL     +  
Sbjct: 1192 MLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFENKIIG 1251

Query: 61   FTDSNFQTNIDSKKSTLGLVFTL-NGEEVVWRSIKQAGL--------------------- 120
            + DS++  +   +KST G +F + +   + W + +Q  +                     
Sbjct: 1252 YVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1311

Query: 121  ------EVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVK 178
                   +   +  PI +Y DN G ++ +  P  H   K+I+ KYH  RE VQ   + ++
Sbjct: 1312 LKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLE 1371

[Close]

BLAST of Clc01G11820 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 12  VGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMY-GAKNLILTRFTDSNFQTNIDSKK 71
           VG++S+F S+P   HW  +K +L YL+  + Y L +  A    L  ++D+++  +++S++
Sbjct: 28  VGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRR 87

Query: 72  STLGLVFTLNGEEVVWRSIKQ 92
           ST G +F LNG  V WRS KQ
Sbjct: 88  STSGYLFKLNGGCVSWRSKKQ 108

[Close]

BLAST of Clc01G11820 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.4e-62
Identity = 136/210 (64.76%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
           MLC      Y VGIVSR+QSNPG DHWT VK IL YLRR RDYML+YGAK+LILT +TDS
Sbjct: 88  MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDS 147

Query: 61  NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
           +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 148 DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 207

Query: 121 -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
             LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 208 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 267

[Close]

BLAST of Clc01G11820 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 8.4e-62
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK +L YLRR RDYML+YGAK+LILT +TDS
Sbjct: 1023 MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDS 1082

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 1083 DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 1142

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1143 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1202

[Close]

BLAST of Clc01G11820 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 8.4e-62
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK +L YLRR RDYML+YGAK+LILT +TDS
Sbjct: 897  MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDS 956

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST G VFTLNG  VVWRSIKQ                             
Sbjct: 957  DFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 1016

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1017 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1076

[Close]

BLAST of Clc01G11820 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61
Identity = 136/210 (64.76%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
           MLC      Y VGIVSR+QSNPG DHWTTVK IL YLRR RDYML+YGAK+LILT +TDS
Sbjct: 184 MLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDS 243

Query: 61  NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
           +FQT+ DS+KST G VFTLN   VVWRSIKQ                             
Sbjct: 244 DFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFL 303

Query: 121 -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
             LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 304 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 363

[Close]

BLAST of Clc01G11820 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.1e-60
Identity = 134/210 (63.81%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 1    MLCCVHVQTYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAKNLILTRFTDS 60
            MLC      Y VGIVSR+QSNPG DHWT VK IL YLRR RDYML+YGAK+LILT +T+S
Sbjct: 1023 MLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTNS 1082

Query: 61   NFQTNIDSKKSTLGLVFTLNGEEVVWRSIKQA---------------------------- 120
            +FQT+ DS+KST   VFTLNG  VVWRSIKQ                             
Sbjct: 1083 DFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLKKFL 1142

Query: 121  -GLEVVPNMHLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIREIVQRGDLIVKQIA 180
              LEVVPNM+LPITLYCDNSGAVANSKEPRSH  GK+IERKYHLIREIVQRGD+IV +IA
Sbjct: 1143 HDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIA 1202

[Close]

BLAST of Clc01G11820 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 45.4 bits (106), Expect = 5.5e-05
Identity = 39/158 (24.68%), Postives = 66/158 (41.77%), Query Frame = 0


Query: 9   TYVVGIVSRFQSNPGYDHWTTVKNILTYLRRMRDYMLMYGAK-NLILTRFTDSNFQTNID 68
           ++ V  +S+F   P   H   V  IL Y++      L Y ++  + L  F+D++FQ+  D
Sbjct: 396 SFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKD 455

Query: 69  SKKSTLGLVFTLNGEEVVWRSIKQAGL---------------------------EVVPNM 128
           +++ST G    L    + W+S KQ  +                           E+   +
Sbjct: 456 TRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPL 515

Query: 129 HLPITLYCDNSGAVANSKEPRSH-NGKNIERKYHLIRE 138
             P  L+CDN+ A+  +     H   K+IE   H +RE
Sbjct: 516 SKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Clc01G11820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042496.1	1.3e-61	64.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.7e-61	64.29	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.7e-61	64.29	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	3.9e-61	64.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	4.3e-60	63.81	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc01G11820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.5e-19	32.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.3e-11	26.26	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.2e-10	26.67	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.3e-08	38.27	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Clc01G11820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKM4	6.4e-62	64.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7TZD0	8.4e-62	64.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	8.4e-62	64.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7V1F5	1.9e-61	64.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7T2V9	2.1e-60	63.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]

BLAST of Clc01G11820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.5e-05	24.68	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 57..163 e-value: 8.63987E-29 score: 102.161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G11820.1	Clc01G11820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding