Clc01G11590 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11590
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2 and GRAM domain-containing protein
LocationClcChr01: 17989655 .. 17990672 (+)
RNA-Seq ExpressionClc01G11590
SyntenyClc01G11590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTCATTTGACATTTGGAAAACCTGGTTTTTTTGACCTCAATAAGCTTGAAGTGAAGTTGGTGCTACGTTTGCATAGAGTTGCTGCCTTGAAATTCAGAAGCCCCTTTCCATGGGAGAATGACAGGTAATAATAGTCCAGTCATGGGGAGTCTTTGTTCATTAGTTTATACTCATAGGTTGTTTTGATCATTAGTTTTATATGTATAGGTCGTTTGTAATTATTCATTGCTAGGCAGGACTAAATCATCATGTAGAAGTCTCATTTTGGTTTTACGGTGTATGAGATACAGAATGCTGATTCCATGTATAAACTATGCACGACTTACTTATATATAATATCAGTTCCATTTTTTGATTGATAAACATCGAGTCATTTCTAGGGATGAGGACTGACTTTTGCTGCTTCTTTGTTTTGATTTCTGGAATGTTTATTCTCTGGTGGATCAGCGAATCTGTGCCCATTTAGGCTGTGTTTACGTATCTGTAAAGAAAAGAAATTGTATGGACTCAATAGTAAAGCGAATGAGATTCTTTTGGTGGTGTATATTACAAATAGGTCATGATGGTATTAAAAAATACAAGAGTATTGTTCACTCTCACATGGAATGAGAAGTTAATTATGATCTCATTGAAGGTTGTATTCATGCACAAGTGCCAACTTTAGTTTCATCAAAGCTAGCTTGGTCTTAACTCTTCAAAGATTCACTCCCATTCACAGGGGCTTTCGGCTCTCTTATGAATTTGAAGATTCAATTTATTTGGGGAGTGTCTTGTCGTTCCCATTCGAAGAGCCACTCAATTCAAGATGATTTGGTTAGTGTGAGCAACGACGAACTTGATGTTCGTATTTTGGTTTCAAATTCAGAGGAAAAGTTAACTAATGACCATGGAGAAGCTTTTGCTTGTTTCAAAGATATAATGAGGGAAAGGATGATCAGGCTTCAAATGTCACTTTTACTTTCTTGTTTGGGGTATTGGGTTGGTTATTATGTTAGTAGCTATTATAGTTAG

mRNA sequence

ATGGAGCTTCATTTGACATTTGGAAAACCTGGTTTTTTTGACCTCAATAAGCTTGAAGTGAAGTTGGTGCTACGTTTGCATAGAGTTGCTGCCTTGAAATTCAGAAGCCCCTTTCCATGGGAGAATGACAGGACTAAATCATCATGTAGAAGTCTCATTTTGGTTTTACGGTGTATGAGATACAGAATGCTGATTCCATGGGCTTTCGGCTCTCTTATGAATTTGAAGATTCAATTTATTTGGGGAGTGTCTTGTCGTTCCCATTCGAAGAGCCACTCAATTCAAGATGATTTGGTTAGTGTGAGCAACGACGAACTTGATGTTCGTATTTTGGTTTCAAATTCAGAGGAAAAGTTAACTAATGACCATGGAGAAGCTTTTGCTTGTTTCAAAGATATAATGAGGGAAAGGATGATCAGGCTTCAAATGTCACTTTTACTTTCTTGTTTGGGGTATTGGGTTGGTTATTATGTTAGTAGCTATTATAGTTAG

Coding sequence (CDS)

ATGGAGCTTCATTTGACATTTGGAAAACCTGGTTTTTTTGACCTCAATAAGCTTGAAGTGAAGTTGGTGCTACGTTTGCATAGAGTTGCTGCCTTGAAATTCAGAAGCCCCTTTCCATGGGAGAATGACAGGACTAAATCATCATGTAGAAGTCTCATTTTGGTTTTACGGTGTATGAGATACAGAATGCTGATTCCATGGGCTTTCGGCTCTCTTATGAATTTGAAGATTCAATTTATTTGGGGAGTGTCTTGTCGTTCCCATTCGAAGAGCCACTCAATTCAAGATGATTTGGTTAGTGTGAGCAACGACGAACTTGATGTTCGTATTTTGGTTTCAAATTCAGAGGAAAAGTTAACTAATGACCATGGAGAAGCTTTTGCTTGTTTCAAAGATATAATGAGGGAAAGGATGATCAGGCTTCAAATGTCACTTTTACTTTCTTGTTTGGGGTATTGGGTTGGTTATTATGTTAGTAGCTATTATAGTTAG

Protein sequence

MELHLTFGKPGFFDLNKLEVKLVLRLHRVAALKFRSPFPWENDRTKSSCRSLILVLRCMRYRMLIPWAFGSLMNLKIQFIWGVSCRSHSKSHSIQDDLVSVSNDELDVRILVSNSEEKLTNDHGEAFACFKDIMRERMIRLQMSLLLSCLGYWVGYYVSSYYS
Homology
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BLAST of Clc01G11590 vs. ExPASy TrEMBL
Match: A0A5D3CUC4 (C2 and GRAM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00610 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 13   FDLNKLEVKLVLRLHRVAALKFRSPFPWEN 43
            FDL+KLEVKLV+RLHRVAALKFRS   WEN
Sbjct: 1026 FDLDKLEVKLVVRLHRVAALKFRSASSWEN 1055

The following BLAST results are available for this feature:
BLAST of Clc01G11590 vs.
Match NameE-valueIdentityDescription
BLAST of Clc01G11590 vs.
Match NameE-valueIdentityDescription
BLAST of Clc01G11590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CUC47.2e-0483.33C2 and GRAM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of Clc01G11590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11590.1Clc01G11590.1mRNA