Clc01G11110 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11110
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 16252801 .. 16257065 (-)
RNA-Seq ExpressionClc01G11110
SyntenyClc01G11110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCAGCATAGACTCGATACCAAAGCCAAAGCCAACCAAAACACCCAATTCCGGATTTCCAACCACTAGCTCCTCCAATCTCGACTTCTTCGAAAAGGATCTAAGAACCAACACAAGGTATCATAGACTACACCAACAAAGAAAACAACAAGCGGACCAAATCTCTTACCAAAGTGCAACTGTCACAGTCATCTTCCATACTTCAAACAATGAATCCATTTTAACACCAAGTGACAGTCATCTACCTAAACTCAATGGGTAACAACAATTAAATATTCACGAAATTACAAGAAAATCTGAACGGAGAGAGCATTTGGGGGCGGCTTGAAGCTGAACTTATATATATACTTCTTTAAATTTTCTTTCTCTTTCCTTTTCCAAAACCCTAAATATATATATATTTAAATTTTTCCAAAACATACCCAACTTATTTCATATAATATTTCTAGACCCATCAAATCAAATCTTTTACGACCACCACTTAATAATTTATTTAACCAAAAAATATCCTAACAAATCAATTCAAATCAATTCCCCAACTTAAATTCAATTCCAACTTTTCTTCGTATTTTCTTAAATTAAAGTTCTTAAGTCACATCTAACTTTTAAATCTCCCCAAATAAATTCAAATTTCCATTAATTGAATTAAATTCAAATCTTTTATCTCAACATAATCCAATTAAAGCCTCAAAATTTAAACACTTAACCAAATAATTCAAGATAATTAAACTTTTAAATATCCCCAAATAAATTCAAATTTCCATTAATTGAATTAAATCCAAAACTTTTATCTCAACATAATCCAATTAAAGCCTCAAAATTTAAACAACTAACCAAATAATTCAAGATAATTAATTTTTTTTTTAAGAAAAACAAATTACTTGAAATCACATTAGACATAAAAGTGGATAAGTTTAAGTAATAGCCAAAACAGTCTATAATATAGGGATAAAGTTGGGTATCTTATCATGGGGACACTATGGGTGCGACTCATTCTTATATTTGATATATACGATGTGTTCCTAAATCGTTCATGTAGAGACATGTGAGTGGGGGCATCCTATGCAATGAGTTTGTATTAGATCGAACCATGAAATAATCACTTTACTTTTATAACACCGTTTACTGTTAAAATTGATTATTTCAAACTGATGACGAATGCACGAGTGAGAGTGGCCTGAGTTTGCCGACTCAATATGCCCCCATTTTAGGGACAAGACCAGACAGATAGATGGAAACATAGTCCTGCAAGATGGAATTCTCTCCTACCTTATTTAAGGTCGTGGAGAAGTTGTTCCCTTCAGTACCAACTCTGGTTCTTGAACAAGGGGCCCCACTCTCTCATTGGCCCAAGAGAGATTCGGTTTGTTGATTAGACCACAAACCAATTGTTCATTAGAGGATCAGTGGGACTTAAGGAACAAAAGGTAATTACAAGGGTAAAACGACAATTTTGACCCAACTGTAATTATGGACAACTTGTAAATGATTGACTTACTAATCATGGTTATATCAAGTGGACAGAAATATATCAACAGTAAGGAGAGTGCAGCTACTGGGCTATAGTGGAGTGTCACGGTAGTTAACAAATGTTAATTAATTTGGTTAAGGGTTCAGTTGGTTAATTTCGGATCGTTGGAGCTCATGATCTGTAGGTCTATTAAATCCACTTGTTAGCTCATGGACTATTTCTTAGAACAATATAATGAAAAAATTTGAAGGTGTTCAAATTTGGTTAAGAAGCAAATTATAATGATTTATTCGTTTAATTATGAATTAGACGAGATTGGAGATATTTAAATATGATTTAAATATCGATCAGATGAATACAGATTCATCGGGTCGAAATTTGTCGGGACAAGTGGAAAATTATTAATTTAATATTTTAATAAATTTTAATTTAATATAATTAATTAAATTGTTTAATTAATTCTTATTTAAATTAATTATATATATATATATATATATATATATATATATATATTATTAAATTAATTTATGAAATCAATTAAATAGAAATATTGGAAATTCCAATTTTGAGGAGAAGCATGAGGTGTTGTCATGAAAACTCTCATCATTTTCTTCATTTTCCACCTCCTACTTAAATGGCTTTGTCACCATATTAAGTATCAATTTCATGGCTAATAGGATTAGCTTAACTTCTTCTATAAATAGGAGAAGAATTGTTGGAATTGAGTGAGGTTTTCGGTTCAATTTTGTTGAAAAATGAAGAAAACCCATAACTCTAAAAATTTGTTTTTTCTCTCATTTTTGCTCCAAATTCATCAAGATTTGGATCCCACAATCCGTTCAAAGGCTAGAGAATAACGAGGAAGACTTTTGTGGAGGAAGACTCTTGTGGTAGTCCACGAATCATTTGTGATCTAAGATTTGGAGAAGACAGCTTCAATTTTGAGCTACAACAAGTAAGGTTCTATCTCCTGTTTTTTCGGTTCTTAGAACATGTATGTTTAATCCTCAAAATTAATGAAATTAGAGTGCTTTAGATCCAAATTGCTTCCTCTATCCTGTTGCCAACTCCTTCAGGGACGGGGTGGGGATTCTCCGTCGGGGAAACAGGTCACCACGGGGACCCATATCCCATTTCCCCCCTTTAATCTCCGCTGGTAGAGCGAGAGAGAGAGAGTGAGAGTGTGAGGGAGAGCGAGAGAGATAAAGTGATTGTGAGTGAGGAAAGGATGCGAGAGAGAGCGAGAGTTAGTCAACATCTTATATATAAATTGGAGTCGAGGAATTCGGGGTCAAGGTCGGGGTCGGGGTTGGGGTGGAAATACCCTCTCCATCTCCGGACAGGGTTCCTAAAAAGGTCTCCTGTTTGTCCCCAATCCCCGGTCAAACCAAGGACTCTTCAACCCGATCAGGTCAGGGCCCAACATTTTTTTTTTTTGCCAACCCTAGTAGGAAGTTAGCTATTATGAGCATATGATACCAATACACAAAAAGTTGAGAATGATTGCTTATGGGAACGGTAAGATAGAAATAGAAACAGGAACAGCAGAAACTACTTTTTGTTGTTTATCAATTTTGACCCATTTTTTAGAAATGTTTCTCAAAATTTAGAAACAAAAAAAACGGGAACAGTTATCAAACAATTTCGTTTCCTAAAAAATGATAAACAGAAATAGGAAAGAAGAAACAATAACGTTATCAAACGAACCCTTAATAAAAATGATATGTCCGAGTGTTGAAGACTTTACCAACCTCAATCAACTCTTTTTCTCCTTTTAACCTCCTTTACTTCCTTTTTCCTTTCTCTTTTCTTTTTAGAAAAATTGTATTTTAATAGAAATTAATCATTCTATTTTTAATAATAAAAATATATTTTATTAATAATAAAATATATTTTATTAATAATAAAATAAGAGGGATAGTCAATTCAATTTGGTCAGTTTTGGAGCCAACAAAAAATCGAACTTATTTTACAAAGAAGGGATCCAAATCATTATCTAATAAAGAACAAAACCAACAATTTGGTTTTTATTTTGTTCGATTTATCATCGATTTGGTTCTCATATTTTGGTATTTGCAAATATTATTTAACTCAATTCAAATAAATCATTAAAAATGATTTAATTTATTTAGTTCAAAATATTGTTTAATTTAATAAATAAATATGTAATTCAATTATTTTATTATTTAATTTCTTTACTTCCAAATATTGTATTTCAATTTCTTTAATTCTAAATATTATTAATTTTGAAATTATTTTAAATGATAGTTAGAAAATATTTACAATAATAATAAAATATTAAAATTTATCTACAAAATATTTACAAATAACAATTTGCGATAGACAATTAGCAGTAGATTGCGATTTTTATCATTTAAAATAATTTTCTATAAAACAACCTATTTATGAGGTCATAAAAGAAGTAAGAAAAAGGAGGAAAAAAATAGAGAGAAAAGAAAAGAAGGAAACCTCTCTTCTTCTTCCCCTCCATAAAACAGCCGCCGACCCCCTTTCCTCAGTTTTCTCCGGCGACACTCCAGCAGCCACAGGCGTAAGGCAGCGACGACTGGAGCCCACACCTACGGAACGGCCAGCTTTTTAGTCGAAAGTCTGCGTTAACTTATGAATCTGACTTGAATTCCTAGGCTTACGAAGCATCGTTTCTTCTCCGTTTGAGACTCCAGCGTGAACAACACAAGTTGAGCATCACGTTTTTGACTACTGGGTGTCTTGCAGAAGCGTTTTTTTGGCTTGGAGGGGTGAGCTTTCGGCTGTTACCTTCACTCTGA

mRNA sequence

ATGGGTATCAGCATAGACTCGATACCAAAGCCAAAGCCAACCAAAACACCCAATTCCGGATTTCCAACCACTAGCTCCTCCAATCTCGACTTCTTCGAAAAGGATCTAAGAACCAACACAAGGGACGGGGTGGGGATTCTCCGTCGGGGAAACAGGTCACCACGGGGACCCATATCCCATTTCCCCCCTTTAATCTCCGCTGTCGAGGAATTCGGGGTCAAGGTCGGGGTCGGGGTTGGGGTGGAAATACCCTCTCCATCTCCGGACAGGGTTCCTAAAAAGGTCTCCTGTTTGTCCCCAATCCCCGGTCAAACCAAGGACTCTTCAACCCGATCAGCCGCCGACCCCCTTTCCTCAGTTTTCTCCGGCGACACTCCAGCAGCCACAGGCGCTTACGAAGCATCGTTTCTTCTCCGTTTGAGACTCCAGCGTGAACAACACAAGTTGAGCATCACGTTTTTGACTACTGGGTGTCTTGCAGAAGCGTTTTTTTGGCTTGGAGGGGTGAGCTTTCGGCTGTTACCTTCACTCTGA

Coding sequence (CDS)

ATGGGTATCAGCATAGACTCGATACCAAAGCCAAAGCCAACCAAAACACCCAATTCCGGATTTCCAACCACTAGCTCCTCCAATCTCGACTTCTTCGAAAAGGATCTAAGAACCAACACAAGGGACGGGGTGGGGATTCTCCGTCGGGGAAACAGGTCACCACGGGGACCCATATCCCATTTCCCCCCTTTAATCTCCGCTGTCGAGGAATTCGGGGTCAAGGTCGGGGTCGGGGTTGGGGTGGAAATACCCTCTCCATCTCCGGACAGGGTTCCTAAAAAGGTCTCCTGTTTGTCCCCAATCCCCGGTCAAACCAAGGACTCTTCAACCCGATCAGCCGCCGACCCCCTTTCCTCAGTTTTCTCCGGCGACACTCCAGCAGCCACAGGCGCTTACGAAGCATCGTTTCTTCTCCGTTTGAGACTCCAGCGTGAACAACACAAGTTGAGCATCACGTTTTTGACTACTGGGTGTCTTGCAGAAGCGTTTTTTTGGCTTGGAGGGGTGAGCTTTCGGCTGTTACCTTCACTCTGA

Protein sequence

MGISIDSIPKPKPTKTPNSGFPTTSSSNLDFFEKDLRTNTRDGVGILRRGNRSPRGPISHFPPLISAVEEFGVKVGVGVGVEIPSPSPDRVPKKVSCLSPIPGQTKDSSTRSAADPLSSVFSGDTPAATGAYEASFLLRLRLQREQHKLSITFLTTGCLAEAFFWLGGVSFRLLPSL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11110.1Clc01G11110.1mRNA