Clc01G09565 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G09565
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Location	ClcChr01: 10793138 .. 10793494 (-)
RNA-Seq Expression	Clc01G09565
Synteny	Clc01G09565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCTTTCTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTTGGGAATATCCCCGTTCATAGTCCGAGATCCACATCTATGAATTGAAAGGTCTGAGTGATAAACTCTACAATCAGTTATTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCCTCTTATTAGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGAAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCATAAAATCCTTTGATAACACTTCTTCCTATTTCTCAATGATATCCGATGATTAA

mRNA sequence

ATGTCTTCTCTTTCTTCCGAGATCCACATCTATGAATTGAAAGGTCTGAGTGATAAACTCTACAATCAGTTATTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCCTCTTATTAGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGAAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCATAAAATCCTTTGATAACACTTCTTCCTATTTCTCAATGATATCCGATGATTAA

Coding sequence (CDS)

ATGTCTTCTCTTTCTTCCGAGATCCACATCTATGAATTGAAAGGTCTGAGTGATAAACTCTACAATCAGTTATTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCCTCTTATTAGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGAAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCATAAAATCCTTTGATAACACTTCTTCCTATTTCTCAATGATATCCGATGATTAA

Protein sequence

MSSLSSEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

Homology

[Close]

BLAST of Clc01G09565 vs. NCBI nr
Match: YP_010127790.1 (Ycf2 [Artocarpus petelotii] >YP_010127806.1 Ycf2 [Artocarpus petelotii] >QXP99973.1 hypothetical protein RF2 [Artocarpus tonkinensis] >QPP20317.1 Ycf2 [Artocarpus petelotii] >QPP20333.1 Ycf2 [Artocarpus petelotii] >QXP99991.1 hypothetical protein RF2 [Artocarpus tonkinensis])

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKGL+D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 910  SEIHIYELKGLNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 969

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 970  FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 1004

[Close]

BLAST of Clc01G09565 vs. NCBI nr
Match: QHB76007.1 (hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >QHB76027.1 hypothetical chloroplast RF21 [Cucumis melo subsp. melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 901 SEIHIYELKGPNDRLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 960

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 961 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 995

[Close]

BLAST of Clc01G09565 vs. NCBI nr
Match: AEK71468.1 (hypothetical chloroplast RF2 [Crossosoma californicum])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 894 SEIHIYELKGPNDRLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 953

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 954 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 988

[Close]

BLAST of Clc01G09565 vs. NCBI nr
Match: QHN53497.1 (hypothetical chloroplast RF21 [Oreocnide frutescens] >QHN53498.1 hypothetical chloroplast RF21 [Oreocnide frutescens])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKK KP LLDDHDTSQKSKFLINGETISPFL
Sbjct: 910  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKRKPFLLDDHDTSQKSKFLINGETISPFL 969

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 970  FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 1004

[Close]

BLAST of Clc01G09565 vs. NCBI nr
Match: XP_022975222.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 839 SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 898

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 899 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 933

[Close]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-41
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 908  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 967

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTR NR KSFDNT SYFSMIS D
Sbjct: 968  FNKIPKWMIDSFHTRKNRRKSFDNTDSYFSMISHD 1002

[Close]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-41
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFL
Sbjct: 904 SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFL 963

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTR NR KSFDNT SYFSMIS D
Sbjct: 964 FNKIPKWMIDSFHTRKNRRKSFDNTDSYFSMISHD 998

[Close]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot
Match: A4QJF8 (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.5e-41
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFL
Sbjct: 916  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFL 975

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTR NR KSFDNT SYFSM+S D
Sbjct: 976  FNKIPKWMIDSFHTRKNRRKSFDNTDSYFSMVSHD 1010

[Close]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot
Match: A4QJP2 (Protein Ycf2 OS=Aethionema grandiflorum OX=72657 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.5e-41
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFL
Sbjct: 907  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFL 966

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTR NR KSFDNT SYFSM+S D
Sbjct: 967  FNKIPKWMIDSFHTRKNRRKSFDNTDSYFSMVSHD 1001

[Close]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.7e-41
Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIH+YELKG +D+L NQLLESIGLQIVHLKK KPLLLDDHDTSQKSK LING TISPF 
Sbjct: 901 SEIHVYELKGPNDQLCNQLLESIGLQIVHLKKWKPLLLDDHDTSQKSKLLINGGTISPFF 960

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 961 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 995

[Close]

BLAST of Clc01G09565 vs. ExPASy TrEMBL
Match: A0A7T1X3U3 (Ycf2 OS=Artocarpus petelotii OX=709060 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKGL+D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 910  SEIHIYELKGLNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 969

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 970  FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 1004

[Close]

BLAST of Clc01G09565 vs. ExPASy TrEMBL
Match: A0A6B9M616 (Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.6e-40
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 901 SEIHIYELKGPNDRLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 960

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 961 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 995

[Close]

BLAST of Clc01G09565 vs. ExPASy TrEMBL
Match: A0A6B9TUP2 (Protein Ycf2 OS=Oreocnide frutescens OX=1399712 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.6e-40
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKK KP LLDDHDTSQKSKFLINGETISPFL
Sbjct: 910  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKRKPFLLDDHDTSQKSKFLINGETISPFL 969

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 970  FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 1004

[Close]

BLAST of Clc01G09565 vs. ExPASy TrEMBL
Match: G0YCZ1 (Protein Ycf2 OS=Crossosoma californicum OX=23043 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.6e-40
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6   SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
           SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 894 SEIHIYELKGPNDRLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 953

Query: 66  FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
           FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 954 FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 988

[Close]

BLAST of Clc01G09565 vs. ExPASy TrEMBL
Match: A0A7T2HD08 (Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFL
Sbjct: 910  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGTISPFL 969

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD 101
            FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Sbjct: 970  FNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHD 1004

[Close]

BLAST of Clc01G09565 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFL
Sbjct: 912  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFL 971

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD 101
            FNKIPKWMIDSFHTR NR KSFDNT S+YFS++S D
Sbjct: 972  FNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIVSHD 1007

[Close]

BLAST of Clc01G09565 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 6    SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFL 65
            SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFL
Sbjct: 912  SEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLINGGTISPFL 971

Query: 66   FNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD 101
            FNKIPKWMIDSFHTR NR KSFDNT S+YFS++S D
Sbjct: 972  FNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIVSHD 1007

The following BLAST results are available for this feature:

BLAST of Clc01G09565 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010127790.1	3.6e-40	91.58	Ycf2 [Artocarpus petelotii] >YP_010127806.1 Ycf2 [Artocarpus petelotii] >QXP9997...	[more]
QHB76007.1	1.8e-39	90.53	hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >QHB76027.1 hypothetica...	[more]
AEK71468.1	1.8e-39	90.53	hypothetical chloroplast RF2 [Crossosoma californicum]	[more]
QHN53497.1	1.8e-39	90.53	hypothetical chloroplast RF21 [Oreocnide frutescens] >QHN53498.1 hypothetical ch...	[more]
XP_022975222.1	2.3e-39	90.53	LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 [Cucurbita maxima]	[more]

BLAST of Clc01G09565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	1.5e-41	89.47	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
B1A978	5.7e-41	88.42	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
A4QJF8	7.5e-41	87.37	Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1	[more]
A4QJP2	7.5e-41	87.37	Protein Ycf2 OS=Aethionema grandiflorum OX=72657 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	9.7e-41	87.37	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Clc01G09565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T1X3U3	1.7e-40	91.58	Ycf2 OS=Artocarpus petelotii OX=709060 GN=ycf2 PE=4 SV=1	[more]
A0A6B9M616	8.6e-40	90.53	Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1	[more]
A0A6B9TUP2	8.6e-40	90.53	Protein Ycf2 OS=Oreocnide frutescens OX=1399712 GN=ycf2 PE=3 SV=1	[more]
G0YCZ1	8.6e-40	90.53	Protein Ycf2 OS=Crossosoma californicum OX=23043 GN=ycf2 PE=3 SV=1	[more]
A0A7T2HD08	1.1e-39	90.53	Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1	[more]

BLAST of Clc01G09565 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.9e-40	85.42	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.9e-40	85.42	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 5..100 e-value: 9.7E-53 score: 178.8
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 6..98
None	No IPR available	PANTHER	PTHR33078:SF39	BNAA06G19300D PROTEIN	coord: 6..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G09565.1	Clc01G09565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding