Clc01G09220 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G09220
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	ClcChr01: 10143870 .. 10146127 (-)
RNA-Seq Expression	Clc01G09220
Synteny	Clc01G09220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGGAAGCCGAACAGTCCCTCCCACTTTTCGCGTGCCACAAGAAATTCAAAATGGCAAGGAGAGTTATTGCCTGGCGAAAAGCTCAAAAGTTTGGAAGGTGAAACACCCCCTGAGCAGCAGCCGATTCAAGCTCTATCCATTGAAGCACCTACTCGAGCATTAAAGGCCACAAATTCTGATGAAATTAATTGTAAGGATTCAATGAGACACGAAGACGAAAAGTCACCTACTCAAGGGACGATAGTGGGGGTTAGCCTTCCCTCATCAAGCATCTCTCTCTCAAACTCGGCGCCAAATCGAGCAGGAAGGAAGCTTTTTTCTTCAGCATCCAAGAGACGGGCCCATCTATTGAAGCCATATCCTAAACATTTTGCCAGAGAAAGAACTTCCTTCCTCAACTCATGGTCAATAATAGCAAACCTGGACCTCCTTGAAGCTTATTGCATCAAATTCCAACTCCTAGGCTTATTTCCAAGCAGGTCAGATCCCCCAACTTTTAATTGCAGCTCCTTTAACCACTCTGAATTTAGAATTCTTGGTTCTAACATTAACTTTGTGCGAGGCCTACTAAGCATCAATCAAGTTACCAAAAGCTCCAGACCAATCGATTCAAATGAAGAGTCGGTAATTAGTGCAAGTAGTGAGGAAATTGAAGAATTCGAAGGCGACGAAAATCAGGGGAAGGGCGATTCATCGGAGGATTATGGAAAAGACTTAGGCCAGTTGTTCCAAGAAGATAACATTCAAGTCACAGACATTTCAAAGGTAGCCTCACTCAAACCAATTGACAAAGAAGTCATCCCTCAGAACTTGAAGTCATTCCTGGGGGATTGTAGTATAATTCTAGGTTAAAGTGGAATGGAAGATTGAAAATCAGACGTTGGATATCCTTCTACCCAAAAATAACAGCATTCATGAAGATTGTATTGTGGAATATAAGATGGCTTGGAGATAAATCAAAGAGAATGGCAATCAAAAGACTCCTGAAAAAGTTAAATTCGGATATTGTTTTATTGCAAGAATCAAAGAAAGACCGTTTTGACCGTATCTTCATTAAAAGCATCTGGAGCTCAAAAGATATTGGCTGGTCCTTTGTAGAAGCAAAGGGAAGATCTGGAGGGTTATTATATTTGTGGGATGAAGGCAAGATTTCTGCGATTGAAGTAATTAAAGGAGAATTTTCCTTGACTCTGAAATGCTTAACAATTTGTAAGAAAGTTTGTTGGATAACAAATGTCTATGGACCCACAGATTATAGAGACAGAAGCCGATTGTGGAGGAATTATCTTCTCTTTCCGAACACTGTGTAGAGCCATGGTGCATAGGAGGAGATTTCAACATCACAAGAAGAATTCAGGAGCGGTATCCTTTGGGGAGATTAACAAGGGGCATGAGAAAATTCAACAATATTATTAATGACTTGAATTGGCTGGAAATTCCCTTGTCCAACGGCCACTTCACTTGGTCAAGGGAAGGACTGGTGATTTCAAGATCCCTTATTGACAGATTTTTTGTCTCTAATAAGTGTTTGAGAACTCAAGGGTAGCAAGACAAGCGCGGATGATCACTTCCCACTCTTGTTTGAAGCCGAGGCTTTCAAATGGGGGCCAGCCCCTTTTAGATTTTGCAACAGCTGGTTGGAAAATAAGGATTGCTGCAGACTCATTGAAAGATCACTGGAAATCGATGGACAGCAAGGTTGGGCTAGTTTCATTATATATGCCAAGCTCAGGAATCTGAAAATTAAGTTAAAGAAATGGCTCTCAAACTATGAAAGGAATAAGAAAAGCAGGGAAGAATACTTATTGAAGGAAATTGAAAAAAGGGATGGCGAAATAGAGGTTGAATTAGAAAATGAAAAAAGACATGAAGCTTCATTGTTGGAGGATAATATAAGAACTTCCCTAAAGGCTGAATTAATGTCCCTCTACCGAATAGATGAAAGAAACTTGATCCAGAAAAACAAACTGAATTGGCTAAAATTGGGAGACGAAAATACAGCATTCTTCCACAGATTCCTTGCAGCAAAAAAAAGGAAAAACTTGATTTCTGAGCTGATCAATGATCAAAGATTGACGACCAAATCTTTCACGGAAATAGAATCTCAAATCCTAGCATTTTATTCATCTCTTTACTCAGTTTCAGCAGGGATCAGATCTGTCCCTCTAAATTTAGAGTGGGCGGTGGTCTCAAGGGAGCAAAACAAGGGGCTGGTAGCTAGCTTTTCCTCAAGTGAAATCAGAAGGCAGTGA

mRNA sequence

ATGCGAAGGAAGCCGAACAGTCCCTCCCACTTTTCGCGTGCCACAAGAAATTCAAAATGGCAAGGAGAGTTATTGCCTGGCGAAAAGCTCAAAAGTTTGGAAGGTGAAACACCCCCTGAGCAGCAGCCGATTCAAGCTCTATCCATTGAAGCACCTACTCGAGCATTAAAGGCCACAAATTCTGATGAAATTAATTGTAAGGATTCAATGAGACACGAAGACGAAAAGTCACCTACTCAAGGGACGATAGTGGGGGTTAGCCTTCCCTCATCAAGCATCTCTCTCTCAAACTCGGCGCCAAATCGAGCAGGAAGGAAGCTTTTTTCTTCAGCATCCAAGAGACGGGCCCATCTATTGAAGCCATATCCTAAACATTTTGCCAGAGAAAGAACTTCCTTCCTCAACTCATGGTCAATAATAGCAAACCTGGACCTCCTTGAAGCTTATTGCATCAAATTCCAACTCCTAGGCTTATTTCCAAGCAGGTCAGATCCCCCAACTTTTAATTGCAGCTCCTTTAACCACTCTGAATTTAGAATTCTTGGTTCTAACATTAACTTTGTGCGAGGCCTACTAAGCATCAATCAAGTTACCAAAAGCTCCAGACCAATCGATTCAAATGAAGAGTCGGTAATTAGTGCAAGTAGTGAGGAAATTGAAGAATTCGAAGGCGACGAAAATCAGGGGAAGGGCGATTCATCGGAGGATTATGGAAAAGACTTAGGCCAGTTGTTCCAAGAAGATAACATTCAAGTCACAGACATTTCAAAGTATAATTCTAGGTTAAAGTGGAATGGAAGATTGAAAATCAGACGTTGGATATCCTTCTACCCAAAAATAACAGCATTCATGAAGATTGTATTGTGGAATATAAGATGGCTTGGAGATAAATCAAAGAGAATGGCAATCAAAAGACTCCTGAAAAAGTTAAATTCGGATATTGTTTTATTGCAAGAATCAAAGAAAGACCGTTTTGACCGTATCTTCATTAAAAGCATCTGGAGCTCAAAAGATATTGGCTGGTCCTTTGTAGAAGCAAAGGGAAGATCTGGAGGGTTATTATATTTGTGGGATGAAGGCAAGATTTCTGCGATTGAAATTATAGAGACAGAAGCCGATTGTGGAGGAATTATCTTCTCTTTCCGAACACTGTGTAGAGCCATGGTGCATAGGAGGAGATTTCAACATCACAAGAAGAATTCAGGAGCGGGTAGCAAGACAAGCGCGGATGATCACTTCCCACTCTTGTTTGAAGCCGAGGCTTTCAAATGGGGGCCAGCCCCTTTTAGATTTTGCAACAGCTGGTTGGAAAATAAGGATTGCTGCAGACTCATTGAAAGATCACTGGAAATCGATGGACAGCAAGGTTGGGCTAGTTTCATTATATATGCCAAGCTCAGGAATCTGAAAATTAAGTTAAAGAAATGGCTCTCAAACTATGAAAGGAATAAGAAAAGCAGGGAAGAATACTTATTGAAGGAAATTGAAAAAAGGGATGGCGAAATAGAGGTTGAATTAGAAAATGAAAAAAGACATGAAGCTTCATTGTTGGAGGATAATATAAGAACTTCCCTAAAGGCTGAATTAATGTCCCTCTACCGAATAGATGAAAGAAACTTGATCCAGAAAAACAAACTGAATTGGCTAAAATTGGGAGACGAAAATACAGCATTCTTCCACAGATTCCTTGCAGCAAAAAAAAGGAAAAACTTGATTTCTGAGCTGATCAATGATCAAAGATTGACGACCAAATCTTTCACGGAAATAGAATCTCAAATCCTAGCATTTTATTCATCTCTTTACTCAGTTTCAGCAGGGATCAGATCTGTCCCTCTAAATTTAGAGTGGGCGGTGGTCTCAAGGGAGCAAAACAAGGGGCTGGTAGCTAGCTTTTCCTCAAGTGAAATCAGAAGGCAGTGA

Coding sequence (CDS)

ATGCGAAGGAAGCCGAACAGTCCCTCCCACTTTTCGCGTGCCACAAGAAATTCAAAATGGCAAGGAGAGTTATTGCCTGGCGAAAAGCTCAAAAGTTTGGAAGGTGAAACACCCCCTGAGCAGCAGCCGATTCAAGCTCTATCCATTGAAGCACCTACTCGAGCATTAAAGGCCACAAATTCTGATGAAATTAATTGTAAGGATTCAATGAGACACGAAGACGAAAAGTCACCTACTCAAGGGACGATAGTGGGGGTTAGCCTTCCCTCATCAAGCATCTCTCTCTCAAACTCGGCGCCAAATCGAGCAGGAAGGAAGCTTTTTTCTTCAGCATCCAAGAGACGGGCCCATCTATTGAAGCCATATCCTAAACATTTTGCCAGAGAAAGAACTTCCTTCCTCAACTCATGGTCAATAATAGCAAACCTGGACCTCCTTGAAGCTTATTGCATCAAATTCCAACTCCTAGGCTTATTTCCAAGCAGGTCAGATCCCCCAACTTTTAATTGCAGCTCCTTTAACCACTCTGAATTTAGAATTCTTGGTTCTAACATTAACTTTGTGCGAGGCCTACTAAGCATCAATCAAGTTACCAAAAGCTCCAGACCAATCGATTCAAATGAAGAGTCGGTAATTAGTGCAAGTAGTGAGGAAATTGAAGAATTCGAAGGCGACGAAAATCAGGGGAAGGGCGATTCATCGGAGGATTATGGAAAAGACTTAGGCCAGTTGTTCCAAGAAGATAACATTCAAGTCACAGACATTTCAAAGTATAATTCTAGGTTAAAGTGGAATGGAAGATTGAAAATCAGACGTTGGATATCCTTCTACCCAAAAATAACAGCATTCATGAAGATTGTATTGTGGAATATAAGATGGCTTGGAGATAAATCAAAGAGAATGGCAATCAAAAGACTCCTGAAAAAGTTAAATTCGGATATTGTTTTATTGCAAGAATCAAAGAAAGACCGTTTTGACCGTATCTTCATTAAAAGCATCTGGAGCTCAAAAGATATTGGCTGGTCCTTTGTAGAAGCAAAGGGAAGATCTGGAGGGTTATTATATTTGTGGGATGAAGGCAAGATTTCTGCGATTGAAATTATAGAGACAGAAGCCGATTGTGGAGGAATTATCTTCTCTTTCCGAACACTGTGTAGAGCCATGGTGCATAGGAGGAGATTTCAACATCACAAGAAGAATTCAGGAGCGGGTAGCAAGACAAGCGCGGATGATCACTTCCCACTCTTGTTTGAAGCCGAGGCTTTCAAATGGGGGCCAGCCCCTTTTAGATTTTGCAACAGCTGGTTGGAAAATAAGGATTGCTGCAGACTCATTGAAAGATCACTGGAAATCGATGGACAGCAAGGTTGGGCTAGTTTCATTATATATGCCAAGCTCAGGAATCTGAAAATTAAGTTAAAGAAATGGCTCTCAAACTATGAAAGGAATAAGAAAAGCAGGGAAGAATACTTATTGAAGGAAATTGAAAAAAGGGATGGCGAAATAGAGGTTGAATTAGAAAATGAAAAAAGACATGAAGCTTCATTGTTGGAGGATAATATAAGAACTTCCCTAAAGGCTGAATTAATGTCCCTCTACCGAATAGATGAAAGAAACTTGATCCAGAAAAACAAACTGAATTGGCTAAAATTGGGAGACGAAAATACAGCATTCTTCCACAGATTCCTTGCAGCAAAAAAAAGGAAAAACTTGATTTCTGAGCTGATCAATGATCAAAGATTGACGACCAAATCTTTCACGGAAATAGAATCTCAAATCCTAGCATTTTATTCATCTCTTTACTCAGTTTCAGCAGGGATCAGATCTGTCCCTCTAAATTTAGAGTGGGCGGTGGTCTCAAGGGAGCAAAACAAGGGGCTGGTAGCTAGCTTTTCCTCAAGTGAAATCAGAAGGCAGTGA

Protein sequence

MRRKPNSPSHFSRATRNSKWQGELLPGEKLKSLEGETPPEQQPIQALSIEAPTRALKATNSDEINCKDSMRHEDEKSPTQGTIVGVSLPSSSISLSNSAPNRAGRKLFSSASKRRAHLLKPYPKHFARERTSFLNSWSIIANLDLLEAYCIKFQLLGLFPSRSDPPTFNCSSFNHSEFRILGSNINFVRGLLSINQVTKSSRPIDSNEESVISASSEEIEEFEGDENQGKGDSSEDYGKDLGQLFQEDNIQVTDISKYNSRLKWNGRLKIRRWISFYPKITAFMKIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKSIWSSKDIGWSFVEAKGRSGGLLYLWDEGKISAIEIIETEADCGGIIFSFRTLCRAMVHRRRFQHHKKNSGAGSKTSADDHFPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPLNLEWAVVSREQNKGLVASFSSSEIRRQ

Homology

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BLAST of Clc01G09220 vs. NCBI nr
Match: XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-68
Identity = 135/226 (59.73%), Postives = 179/226 (79.20%), Query Frame = 0


Query: 411 DHFPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLK 470
           DHFPLLFEA AF+WGP+PFRFCNSWL+NK+CCR+IE S  I GQQ WA F +Y++LR +K
Sbjct: 82  DHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENSSLIKGQQDWAGFALYSRLRRVK 141

Query: 471 IKLKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELM 530
             +K+WL+ +E+++K REE LLKEI+++D + +  LEN         E+++R SLKA+L+
Sbjct: 142 QSVKRWLAEHEKDQKIREESLLKEIKEKDLQADT-LENFS------AEEDVRVSLKADLL 201

Query: 531 SLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIE 590
           SLY+ +ER+LIQK+KLNWL LGDENT+FFHRFLAAK+RKNLI+EL N+Q L TKSF EIE
Sbjct: 202 SLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAELFNEQGLPTKSFREIE 261

Query: 591 SQILAFYSSLYSVSAGIRSVPLNLEWAVVSREQNKGLVASFSSSEI 637
           + IL F+S+LY+   G RS+PLN+ W+ VS E N  L+A FS++EI
Sbjct: 262 TIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTTEI 300

[Close]

BLAST of Clc01G09220 vs. NCBI nr
Match: XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-68
Identity = 135/226 (59.73%), Postives = 179/226 (79.20%), Query Frame = 0


Query: 411 DHFPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLK 470
           DHFPLLFEA AF+WGP+PFRFCNSWL+NK+CCR+IE S  I GQQ WA F +Y++LR +K
Sbjct: 82  DHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENSSLIKGQQDWAGFALYSRLRRVK 141

Query: 471 IKLKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELM 530
             +K+WL+ +E+++K REE LLKEI+++D + +  LEN         E+++R SLKA+L+
Sbjct: 142 QSVKRWLAEHEKDQKIREESLLKEIKEKDLQADT-LENFS------AEEDVRVSLKADLL 201

Query: 531 SLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIE 590
           SLY+ +ER+LIQK+KLNWL LGDENT+FFHRFLAAK+RKNLI+EL N+Q L TKSF EIE
Sbjct: 202 SLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAELFNEQGLPTKSFREIE 261

Query: 591 SQILAFYSSLYSVSAGIRSVPLNLEWAVVSREQNKGLVASFSSSEI 637
           + IL F+S+LY+   G RS+PLN+ W+ VS E N  L+A FS++EI
Sbjct: 262 TIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTTEI 300

[Close]

BLAST of Clc01G09220 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-68
Identity = 135/226 (59.73%), Postives = 179/226 (79.20%), Query Frame = 0


Query: 411 DHFPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLK 470
           DHFPLLFEA AF+WGP+PFRFCNSWL+NK+CCR+IE S  I GQQ WA F +Y++LR +K
Sbjct: 82  DHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENSSLIKGQQDWAGFALYSRLRRVK 141

Query: 471 IKLKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELM 530
             +K+WL+ +E+++K REE LLKEI+++D + +  LEN         E+++R SLKA+L+
Sbjct: 142 QSVKRWLAEHEKDQKIREESLLKEIKEKDLQADT-LENFS------AEEDVRVSLKADLL 201

Query: 531 SLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIE 590
           SLY+ +ER+LIQK+KLNWL LGDENT+FFHRFLAAK+RKNLI+EL N+Q L TKSF EIE
Sbjct: 202 SLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAELFNEQGLPTKSFREIE 261

Query: 591 SQILAFYSSLYSVSAGIRSVPLNLEWAVVSREQNKGLVASFSSSEI 637
           + IL F+S+LY+   G RS+PLN+ W+ VS E N  L+A FS++EI
Sbjct: 262 TIILDFFSNLYTKCTGTRSIPLNMAWSRVSAEGNSRLIAKFSTTEI 300

[Close]

BLAST of Clc01G09220 vs. NCBI nr
Match: XP_038904301.1 (uncharacterized protein LOC120090656 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 8.1e-45
Identity = 102/204 (50.00%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 411 DHFPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLK 470
           DHFPL  EA AF+WGP+ FRFCNSWL NK+ C+LIE+SL+      WA+  +   LR  K
Sbjct: 104 DHFPLTLEAGAFEWGPSSFRFCNSWLNNKESCKLIEKSLKKKENHQWAA-TLSTNLRKTK 163

Query: 471 IKLKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELM 530
             LKKW   + +  K +EE LL E++++D  + V++ ++ R       D+   SLKA+L+
Sbjct: 164 SALKKWFHEFGKEMKLKEESLLNELQRKD-SLTVDVSSQIR------VDDASYSLKADLL 223

Query: 531 SLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIE 590
           +LY+++E++LIQK KL WLK GDENT+FFHRFL+ +KRKNL ++L+NDQ L T+   +IE
Sbjct: 224 ALYQLEEKSLIQKCKLKWLKEGDENTSFFHRFLSTRKRKNLFAKLLNDQDLPTRFTRDIE 283

Query: 591 SQILAFYSSLYSVSAGIRSVPLNL 615
             IL FYS LYS S G R++PL L
Sbjct: 284 DIILGFYSLLYSKSDGPRAIPLTL 299

[Close]

BLAST of Clc01G09220 vs. NCBI nr
Match: RVW13148.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 160.2 bits (404), Expect = 5.8e-35
Identity = 109/380 (28.68%), Postives = 178/380 (46.84%), Query Frame = 0


Query: 273  WISFYPKITAFMKIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKS 332
            W+     +   MKI+ WN+R LG ++KR  +K  L+  N D+V++QE+KK+  DR F+ S
Sbjct: 736  WLGRLGSLCFPMKIISWNVRGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGS 795

Query: 333  IWSSKDIGWSFVEAKGRSGGLLYLWDEGKISAIEI--------IETEAD-CGGIIFSF-- 392
            +W+ ++  W  + A G SGG+L +WD   +   E+        ++   D CG +  S   
Sbjct: 796  VWTVRNKDWVALPASGASGGILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 855

Query: 393  ---RTLCRAMVHRRRFQHHKKNSGAGSKTSADDHFPLLFEAEAFKWGPAPFRFCNSWLEN 452
                   R       F  +        +TS  DH+P++ +   F WGP PFRF N WL++
Sbjct: 856  GPNSPSLRKDFWVELFDIYGLQEALIRRTS--DHWPIVMDTNPFMWGPTPFRFENMWLQH 915

Query: 453  KDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLLKEIEKR 512
             +               GW       +L+ +K KLK+W        K +++ +L ++   
Sbjct: 916  TNFKENFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANF 975

Query: 513  DGEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLGDENTAF 572
            D      +E E      LL    R S K EL  L   +E +  QK K+ W+K GD N+ F
Sbjct: 976  DA-----IEQEGGLNPDLLSQ--RASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKF 1035

Query: 573  FHRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPLNLEWAV 632
            +H+    ++ +  I EL N++ L  K+   I  +IL ++  LY+   G       L+W+ 
Sbjct: 1036 YHKVANGRRNRKYIKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSP 1095

Query: 633  VSREQNKGLVASFSSSEIRR 639
            +S E    L + F+  EI +
Sbjct: 1096 ISEESALRLDSPFTEEEISK 1106

[Close]

BLAST of Clc01G09220 vs. ExPASy TrEMBL
Match: A0A803PZR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-36
Identity = 122/386 (31.61%), Postives = 178/386 (46.11%), Query Frame = 0


Query: 284 MKIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKSIWSSKDIGWSF 343
           MKI+ WNIR  GDK KR AIK  + K+N D+V+LQE KK   DR FI +IW S+   W +
Sbjct: 1   MKILTWNIRGSGDKVKRRAIKATICKINLDLVILQEVKKTTIDRSFIGNIWRSRFKAWIY 60

Query: 344 VEAKGRSGGLLYLWDE----------GKISAIEIIETEADCGGIIFSFRTLCRAMVHRRR 403
             A GRSGG L +WD           G+ S   +I+ E       F     C   +    
Sbjct: 61  HPAWGRSGGTLLVWDTRSVTVLDSLVGEFSISTLIQAEGKNPWWFFGIYGPCSYKLRPDF 120

Query: 404 FQH---HKKNSGA------------------GSKTSADDHFPLLFEAEAFKWGPAPFRFC 463
           +      K+  GA                   S ++  +H P++ ++   KWG +PFRF 
Sbjct: 121 WDELAGLKEICGASWCLGGDFNVVRRVGEKLNSVSNTRNHSPVVIDSNPPKWGHSPFRFD 180

Query: 464 NSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLL 523
           N WLENK   +L E         GW       KLR ++  +KKW      N K  +    
Sbjct: 181 NQWLENKSFSKLFEIWWNKANVSGWPGTRFMTKLRIVQENIKKWSKTTFGNSKIAK---- 240

Query: 524 KEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLG 583
             +E+R  EI+ +LE       SL ++  R  +K +       +ERN+  K+K  W+K G
Sbjct: 241 AAMERRILEID-KLEGTSMWNQSLADE--RRGIKKDWQQKVFEEERNIWLKSKCKWVKEG 300

Query: 584 DENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPL 639
           D N+ FFH  L A+K KN IS +  +         +I S++++F+S LY+      +   
Sbjct: 301 DANSRFFHNLLNARKAKNTISRIEREDGTILDREDDIVSELISFFSKLYTSERKQGADIE 360

[Close]

BLAST of Clc01G09220 vs. ExPASy TrEMBL
Match: A0A438BQB2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_783 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-35
Identity = 109/380 (28.68%), Postives = 178/380 (46.84%), Query Frame = 0


Query: 273  WISFYPKITAFMKIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKS 332
            W+     +   MKI+ WN+R LG ++KR  +K  L+  N D+V++QE+KK+  DR F+ S
Sbjct: 736  WLGRLGSLCFPMKIISWNVRGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGS 795

Query: 333  IWSSKDIGWSFVEAKGRSGGLLYLWDEGKISAIEI--------IETEAD-CGGIIFSF-- 392
            +W+ ++  W  + A G SGG+L +WD   +   E+        ++   D CG +  S   
Sbjct: 796  VWTVRNKDWVALPASGASGGILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 855

Query: 393  ---RTLCRAMVHRRRFQHHKKNSGAGSKTSADDHFPLLFEAEAFKWGPAPFRFCNSWLEN 452
                   R       F  +        +TS  DH+P++ +   F WGP PFRF N WL++
Sbjct: 856  GPNSPSLRKDFWVELFDIYGLQEALIRRTS--DHWPIVMDTNPFMWGPTPFRFENMWLQH 915

Query: 453  KDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLLKEIEKR 512
             +               GW       +L+ +K KLK+W        K +++ +L ++   
Sbjct: 916  TNFKENFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANF 975

Query: 513  DGEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLGDENTAF 572
            D      +E E      LL    R S K EL  L   +E +  QK K+ W+K GD N+ F
Sbjct: 976  DA-----IEQEGGLNPDLLSQ--RASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKF 1035

Query: 573  FHRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPLNLEWAV 632
            +H+    ++ +  I EL N++ L  K+   I  +IL ++  LY+   G       L+W+ 
Sbjct: 1036 YHKVANGRRNRKYIKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSP 1095

Query: 633  VSREQNKGLVASFSSSEIRR 639
            +S E    L + F+  EI +
Sbjct: 1096 ISEESALRLDSPFTEEEISK 1106

[Close]

BLAST of Clc01G09220 vs. ExPASy TrEMBL
Match: A0A438HFR2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_207 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-34
Identity = 114/405 (28.15%), Postives = 182/405 (44.94%), Query Frame = 0


Query: 285  KIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKSIWSSKDIGWSFV 344
            KI+ WN R LG + KR  ++R L   N D+V+LQE+K++ +DR  + SIW  K + W  +
Sbjct: 704  KILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVAL 763

Query: 345  EAKGRSGGLLYLWDEGKISAIEII-------------ETEA------------------- 404
             A G SGG++ LWD  K +  E +             E E+                   
Sbjct: 764  PACGASGGIVILWDSVKFNCSEKVLGSFSVTVKLNSDEEESFWLTSVYGPNKAVWREDFW 823

Query: 405  ----DCGGIIF-------SFRTL---------CRAMVHRRRFQHHKKNSGAGSKTSADDH 464
                D  G+ F        F  +          R  V+ RRF    + S A  + ++ DH
Sbjct: 824  LELQDLHGLTFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESEALPRWTS-DH 883

Query: 465  FPLLFEAEAFKWGPAPFRFCNSWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIK 524
             P+  E   F WGP PFRF N WL + +         +    +GW       KL+ +K K
Sbjct: 884  SPICLETNPFMWGPTPFRFENMWLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSK 943

Query: 525  LKKWLSNYERNKKSREEYLLKEIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELMSL 584
            LK+W +    + + R++++L ++ + D      +E E      L+ + I    + EL  L
Sbjct: 944  LKEWNTRVFGDLRERKKHILTDLGRID-----RIEQEGNLNLELVSERILR--RKELEDL 1003

Query: 585  YRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIESQ 638
               +E    QK+++ W+K GD N+ FFHR    ++ +  I  LI+++  T  +   I  +
Sbjct: 1004 LLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERGETLNNIEVISEE 1063

[Close]

BLAST of Clc01G09220 vs. ExPASy TrEMBL
Match: A0A438IJB1 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_714 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-34
Identity = 107/378 (28.31%), Postives = 181/378 (47.88%), Query Frame = 0


Query: 285 KIVLWNIRWLGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKSIWSSKDIGWSFV 344
           KI+ WN R LG K KR  ++R L   N +IV+LQE+K++ +DR F+ S+W+ + + W  +
Sbjct: 613 KILSWNTRGLGSKKKRRIVRRFLSTQNPNIVMLQETKRETWDRRFVSSVWTGRRVEWVAL 672

Query: 345 EAKGRSGGLLYLWDEGKISAIE------IIETEADCGGI----------IFSFRTLCRAM 404
            A G SGG++ LWD  K    E       +  + + G +           F++  +    
Sbjct: 673 PACGASGGIVILWDSSKFECTEKVLGSFSVTVKFNSGRVACLTPPLRNAAFTWSNMQADP 732

Query: 405 VHRR--RFQHHKKNSGAGSKTSAD-------DHFPLLFEAEAFKWGPAPFRFCNSWLENK 464
           + +R  RF    +     S++  +       DH P+  E    KWGP PFRF N WL + 
Sbjct: 733 ICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLLHP 792

Query: 465 DCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLLKEIEKRD 524
           +         +    +GW       KL+ +K+KLK+W      + K R++ +L ++ + D
Sbjct: 793 EFKEKFRVWWQECTSEGWEGHKFMRKLKFVKLKLKEWNIMTFGDLKERKKLILTDLSRID 852

Query: 525 GEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLGDENTAFF 584
                 +E E      L+ +  RT  + EL  +   +E    QK+++ W+K GD N+ FF
Sbjct: 853 -----LIEQEGNLNPDLVLE--RTLRRKELEDVLLKEEVQWRQKSRVKWIKEGDCNSKFF 912

Query: 585 HRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPLNLEWAVV 638
           HR    ++ +  I  LI+++  T  +  +I  +I+ F+ +LYS   G       ++W  +
Sbjct: 913 HRVATGRRSRKFIKSLISERGETLNNIEDIYEEIVNFFGNLYSKPVGESWRVEGIDWVPI 972

[Close]

BLAST of Clc01G09220 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-32
Identity = 118/384 (30.73%), Postives = 177/384 (46.09%), Query Frame = 0


Query: 284  MKIVLWNIRW---LGDKSKRMAIKRLLKKLNSDIVLLQESKKDRFDRIFIKSIWSSKDIG 343
            +K + +NI +    GDK KR AIK  L K+N D+V+LQE KK   DR FI SIW S+   
Sbjct: 779  LKNLTFNINYEKGSGDKMKRKAIKATLSKVNPDLVVLQEVKKASVDRTFIGSIWRSRFKA 838

Query: 344  WSFVEAKGRSGGLL-----------------------YLWDEGKISAIEIIETEADCGGI 403
            W  + A GRSG L+                         WDE  ++ + II  +  C G 
Sbjct: 839  WILLPAIGRSGVLIEAEGRRPWWFSGVYGPCSYKDRVAFWDE--LAGLSIICGDMWCLGG 898

Query: 404  IFSFRTLCRAMVHRRRFQHHKKNSGAGSKTS----ADDHFPLLFEAEAFKWGPAPFRFCN 463
             F+           RR Q  K NS + +K        DH P++ ++    WGP+PFRF N
Sbjct: 899  DFNV---------VRRVQ-EKLNSNSWTKKMLVRIVSDHSPVVLDSNPPSWGPSPFRFDN 958

Query: 464  SWLENKDCCRLIERSLEIDGQQGWASFIIYAKLRNLKIKLKKWLSNYERNKKSREEYLLK 523
             WLE+    +  E   +     GW      +KLR +K  + +W      NK     +++K
Sbjct: 959  QWLEHTTFSKSFESWWQKAEGAGWEGTKFMSKLREVKGNITEWSKKTYGNK-----HVIK 1018

Query: 524  EIEKRDGEIEVELENEKRHEASLLEDNIRTSLKAELMSLYRIDERNLIQKNKLNWLKLGD 583
               +R   +   LE       SL+E+  R ++K E   L   +ER +  K+K  W K GD
Sbjct: 1019 IAMERRLMLLDSLEASNEWNQSLMEE--RRAIKKEWQQLVFEEERGVWMKSKCKWAKEGD 1078

Query: 584  ENTAFFHRFLAAKKRKNLISELINDQRLTTKSFTEIESQILAFYSSLYSVSAGIRSVPLN 638
             N+ FFH  L A+K +N IS +  +     +   EI  +I++F+SSLY+      +    
Sbjct: 1079 ANSRFFHNLLNARKSRNTISRIEREDGSFLEEKEEIVKEIISFFSSLYTSERRAGNSIEG 1138

[Close]

BLAST of Clc01G09220 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-07
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 527 AELMSLYRIDERNLIQKNKLNWLKLGDENTAFFHRFLAAKKRKNLISELINDQRLTTKSF 586
           A L S YR       QK+++ WL+ GD NT FFH+ + A + KNLI  L  D  +  ++ 
Sbjct: 429 AALESFYR-------QKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENV 488

Query: 587 TEIESQILAFYSSLYSVSAGI 608
           T+++  I+A+Y+ L    + I
Sbjct: 489 TQVKEMIVAYYTHLLGSDSDI 502

The following BLAST results are available for this feature:

BLAST of Clc01G09220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884536.1	1.8e-68	59.73	DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]	[more]
XP_038884537.1	1.8e-68	59.73	DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]	[more]
XP_038884535.1	1.8e-68	59.73	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]	[more]
XP_038904301.1	8.1e-45	50.00	uncharacterized protein LOC120090656 [Benincasa hispida]	[more]
RVW13148.1	5.8e-35	28.68	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Clc01G09220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G09220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PZR9	1.9e-36	31.61	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438BQB2	2.8e-35	28.68	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438HFR2	1.1e-34	28.15	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438IJB1	1.4e-34	28.31	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A803P465	2.9e-32	30.73	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Clc01G09220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	7.1e-07	35.80	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 281..487 e-value: 1.8E-9 score: 39.7
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 284..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 238..368
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 238..368

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G09220.1	Clc01G09220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity