Clc01G07900 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G07900
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationClcChr01: 8012758 .. 8021396 (+)
RNA-Seq ExpressionClc01G07900
SyntenyClc01G07900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGAGGTCTTGAAGTTTGAATAGTGAGGTAGATCGTGTCAAATCATTTATCTTCCGAGATACTTACTCAAATATAATTATGTTCCGAGATACTTACTCAAATATAATTTAAAAAATAGTTATTTTGAAAATATGTAGTATTTGACAACAACTTAAAATAGCTTTTGAGTTATATTTTAAACAGATTTTATCACCTTTGCAATGAAAGAGTTCAACAATACAGGATCCAAACTTCTATTGTCTAAAGTAAGGGAACAATAAGGAATCCAAAGTAAGGGAACAATATATTGTCTAAAGTAAGGGAACAATAAGGAATCCAAACCTGTAGCCTTGATTTACTTTAACAACATTTAAGATAATCAAGATATTATGCCTTAACCAGTTAAACTATGCTCAAATCAGTGAGTTAGTGAGAGGGACAGAAAAGACTTATGGATTAAAGTAAAAGAATAGGACACTAAAAAATCTAATTGGGATGAAATTTCATGTTTATTCCACTTTGGGGCTTGTTGTGGGGTTATTTTGGATCAAAAGCCATAATCGACATTTAAGATACAAAGTCGAGAAGATAGCATAATTTGAGTGAAAGTGACAACTTAGGACCAAAATGGGCATAGAGCATGCTCAGCCTCTGCTAAGGCCAAGGTCAAGTCTCACAAAACACATGATGGGGCATGTAACAACTGAATGGATCATCTTAGGCCAAAATATGGCTAAAGGAAGGGTCGAGGCTGACCCTAGCAAAATACCAAATAGCGCACACCCCTCACATACTCTAACCTTGGATAATCTCAATACAACACCGAAATCGGGGAAGGTCCTAGGTCAACTATACCTATAAATACATCATGATAGCTTCATGGAGAAGTAAGTCCATTATCATAATACTCAAACTTTCTACTCGCTACACATATATGCTTTTTTACTTAACAATTGGAGCTTGTGTGACAAGCACCACACTAGTGTGCATATCTTTCCATCTTACAAGTCACGTTTGTTGAATATTATTTTTTTTTCGAGAACTCAAAAATTACATTTTAGTTCCTAAACTTTATTGAGAAAAATCGATAAGTATGGTAAATTATATCGATCTTCACCCTCAACTTTGATTTTCATTAAATTAAAACTAAAAAATTGACAAGTGTTGTAATTATTGAAACTCTTTTACCCTCAAATGTACTGTCCATTGAAAACATGTAATCAAATATTATAAATTCGGCTTGATTACAACTTGTCTAATTTTGAGTTTCAATTTAATTACAATGAGAGTTGAGAGTGAAGATGGATATAATTTACCAAACTTATGGATTTTTCACATGAATATTCTGTAATCAAGCGTTGTAATCAAAACATGAAACCAAATATTAAGACAAAAAAGAACTGATGGGATTTTTAAATAATGATTGAAAAAAGTAGTGAGGATTAAAATAAGATTTTGTGCAAAATTTAGGACTTGTATGGTAGAGAATTTGAAAACAAGGAATTCAATAAAAACAAAATTGTATTTCATGTTTTCAAATTTGTTTTGGGTAACAAATTTAGAAATTGGATTCTAATTTAAACCATTATTTAAAATGTATTTGATATTATACATTTATAAATCATAAAACTAGTTGTAGTTACTCACTAATATTTAGTTGACAATAAATTATTATTAATTTATTTATGAATGTGATTTATGTAAAAAAATTATATAAATTCTATATTATATAATTTCTTATACATTACATAATACGTATTTTATTTTTTGAGTTTATAACATTACATATTGTATTTCTAATTTTTTTATATTGATTTAATATAATTCTACATTATAAAATTTAAAATTCAAAATCTAGGTACAATGAAAATATAAAAATGTTGTTTTCAGAATTTGGACTATTTGGATCACAGAATCCAAAAACAATTTTCAAAAACAAAATTCAGATTGTCTGCCAAACACATATTTGTTAAACCCAATGAATTTGAAAATAAATTCTCTATCAACAGACCCTTAGAGACTGCATGTGTTTGAAAACTCAAACATTAACATGATGATATATTAAGTTAAGAGATAAAATAAAACATTTGAAAGTTCAATGACTAATAGCAAAATAAGCACGAAAGTTTAACTACCCTCTCATACTTTTGTTGAACTAAAAAAATTGTCATTATCTCTCACTGTGATCACGTGAGTTGAAAATTTAAAACTACACCTATTTATTTGCAATCTCTTACCAGAAAAAATAATAATAATAACAAATCTAAAAAGAAGTCTAAATATGTTAATTAAAAAAAAAGTGCTATATCATAGAAAATTTAAACAAGTTAGGTTGGAGGATGAATTTGACTAATCTGAAATTGTCATGCTGTTGTTTTAAATTTGGGACCAGCAAAAATTTTGACACAAAATAATGGTAAATTCAAATGGTGCCATGTGTTTGTTTAGAGTCATATGACAATTGGATTCAAGGCAAGCCCAAAACCTATTCAATGTTAATTGGGTTTGAAGCCCAATTAGTCTTGAGCTTCATGCAACAAATCCACTATAAAGAGATTGGGCCCAAAGTAAAAATTAGTCTTGAGGTTTCATTTTGAAATAGAAGAATGACAAAAATAATTTTTAGGGTTATTAATTAATAAGTATCAAATGACCAAAATACCCGTAGACACAAATAACTCATTAATCTGAAAAATAAAGGTTTAAAATTGCAACAAACAAGATTTAGTTAGTATTTTTCCAAAAAAAAAAAAAAAATGTTGGATATACCTTTTTTTCAAATATTCCAAATAAAATGAACTCTCTTTTTTTTTTTAAAAAAAAAAAAGAAAATATTTGAAATCTTCTAGATCTTTAAAACTAACCAAAACAATTGTTGAGAAAAAAGATTTTGAATGTTTAAGATAGTATCTGCATAATATATTTAACATTAATAAAAGAAACAAAAAAAAAAAAAAAAAACGATCTTAGATAGCTGAAAAGGAAATTTTGAATAGGAAAAAAAATATAATATTAGATATTTAAAAAAATTAAAAAAAAAAAGTGGACTTGAATACAAAAATTGAAATGAAATTTTGAAAAATTTGAAAAAAAAAAAGTGAATAGAAAAGATAATAGATGAATAAAGATGTAAACTTTTTTTTTTTGAAATTTTGAACAAACGAAAAGATAATAAATTTGTATTTAAAACTGAAGAAGTGGGCATATAATTACACAGTATATGTATGTGAGATTTACTGTAGAGAGCATTTTTAAATGAGGTTTTCAGATTCAGTTTTTTTTTTTTTTGGAGATTTCTTGATGGGTAATTTTATGGGTTTTGTGTGAGTCTTGCTGAGGACTTTTGGGTTGTATTTTGTTCTTGAAGACTGAAGTTAATATAAGATTGTTCACTTTGTATGATAGGTGCAGACTTTATTGGTCGAACAACTATAAATATTTGTCTTCTCTTCTCTAATCTTCTTCACTTCCATATACATTATGGAATAATGTTATTTAGTGTAGTTAACTGATTTGATTTCCATTTACTGTTTCTTATCAATAAGTAGATAAATGATATTAGAGTTATCAATAAGTAGATAACTGATTTGGGTTATGTGATTTTTCACAACAAATGGTATTAGAGTTGTGGTTGATAAATGAGTAGTAGTGGTTTTCATCTCCAAAGTTGTAATATTTAGTTTATGTGGTGGGGAGTTTGTGAGTATTTTGTATTTCGACTTTGTTTTTCGTTGTTGTTTTGATCCATGTTATGAAATTCGTCTGATTGGTTGATTTGAATTGATGGTTGGATTGATTTGAAATCTTTGGCTTGACTAATTACTGTATATATTGTATGTTGATCAAATTTTATGTTTTGGTTGGCATGTAATTTTATGTTATACTTCTAAATTCATTACTCGAAAGCTACAAAGAAGTTAAGGTTGAAATAAAGTATGACACAGATTCATTAACTTTAAAAGTTGTCTTAAATGTTTTGAGATGTAAAGATTTTGAAATCAAATATGAGAAGAAAGATTTTGAAGTTTTAGTGGTTAGAAGGAGATATGAATCTAAAGGAAGATTACAAGTAAAAAAACACTAAACATATATCTAAATCTAAAGGTAGAGAGAAAAGAAAATGTTACTACCATTTGATGAAAAATTGTAGAACATATTGCTGCAGATGTGCATGCATGGGGAGTATGATTCAACAAGGGTTTTAACTGTGTCTGAAAATGCAGTTAGGGATGAGTGGATGCTTGATTATGGATGTTCCAATCATATGATTCATCATGGACGTTACTTTCAACATTTTGAGAAACTTGAAGGTGGGAAGGCTTTGGAGAATAATCAACATTGTGTTGTAAAAGACATAGGATATGTGAAGTTGAAACTCGATGATTTGGAGAAGTTCATGTCTGGTGTTGGGGTTGTTCCTGATTTTAAAGAGAAATTTGGAAAAGAAACTATCATTTGGCACAACATATTAGCTCATGTCTCCCAAAGGAAACGAATACTTCATCCTATAGCACAAACATTGGATCTACTTTGATATTGTTTACAATTAAATGAAAAAAAAAATGATTAAACATTTACATACCTTGAAGGGATCAAATTCCCAACAAAAGTGATCGATCGTCTTTGCTTTTGAATTTTATTTTTTGAACTCACATCACATAAAAGATAACATACAGTGTATTCATAACACAAACAAGGCTAAACATGAAATAAAGAGGAAGAAGATAATTACCTTTAAAGATCACTGATTTCTTAAAAAATTCTCCCAATGTAAAGATCTTACAAACAACTTATAGTGATGCCTCCTTCAAATCTTCTCCGCAAGAGATAGACAAAGACAGACAGAGAAGAGTTGTTAGACCACTAACAAGATGTGATGAAGTAAGTTGTGCTCATGCCTTAAATTATGATGAAATGTTTTTAAGTCATCAAATTTTCATGAAGCAATGCTGTTTGAAGGGAGTGATAAGTGGTTAATTACCATGAATGAAGAAATGACCTCGTTCACACTTATCAAGTCTATCCTGATTTATTTCTAGAAAGTTCAAATATATAGTGTTGTATTTATCAAATATACTTTGTTTTCTCCTGCGAAACTTCTTGTCGATTTTTGGTTTCATTTATGGAGGCAACAATTTTTAGATTTTGGAGAAACTTTTCTTACTTATATAGATTTTGAAAAGAAAACTGGGTTTGGAAGCTCATCACTGCAATAACTTCCTTTGCATGCTTCCTTTGGGATCAATATTATTATATATTTGTTTTAAAAAAACTCAAAGGTTCGACTTAAAAGGTAAATTGGCTAAACTTTTTTTTTTTTTTTTTTAAATAATAGCATATTAAGCTATTCGTGTAAAAAATAGAAAATACTTATTCGCAAAAGACGAAATACTCAAGGACTCCAAAATAATAATTAGAAAAAGACCCATGGACCCTAAAATTGAACTAATTTGTAAATTGTAAGGGAGTGTTTGGAGGACAATAATGGGATGATATTGTAATGTAATCCAAAATCAATGTTTGGATTGAGCATTTTGGGCTCGATTTGTAATACAAAACTCATTTCGTTTCGACAGTTTTCAATCCAACCTCATTTCCTACTGTTTTCACGTTTCATGATCTCATTTTCATTTCTTTCTCGAGTTCTTACGCATTCCAATATTCCTATGATTACCAGTAATCCTATTACATTCCAATTCTCCAAGCAGCCCCTAAAAGATAGATAAAGAAAAAATGGGCACGTGCTGGAGAGTTGGTTTGCTAAACACTTGAAGGATTGTTCTTTTTGCTGTATTTTCAAATGTAAGCTTAAAAGTGGTTATATATCCCAATTTCCCTTACACTTAAGTAAGAGAGTTTGGTCCAAACCCAACTAAGCCCAAACCACATAAAAAAGCCCATGAAAAAAAAGCTCCATAAATAGACAAACTACACTTTATTTCAAGGAGTTTAGAAACTCTTTAAGGCATTGTTTGAGGTAAGGTGTGAGTCTCATATTGTTGTTTTTTAATTATAGATCCATTAACTTCTTAAACCAAATATGGATTGACGTTTAGAACTTGACTCCCCCAACTTCAATTCACTGAGGCAAACAATCCTAAAAGATTGAAGACTCTTTAAAAACTTTGATAATTGAAATCTACTTCAAAGTGTCAATTACTAAAGATTCAACTTTAAAAACAAGTTTTTCAGTACTTGAGTCAAACTTATTAACACGTACTTGACGTTATTTGATGCATAAAATCTAATGTACAAAGTCAACTCATCCATCAACAAACTTTGAGTCGTTCGTCAACATACTTCGTTAATTCCAAATTGGTGTTCAAGTATCAGATCTCCAAATAAATGGTTAAAGTAATAATTGAATGACCATTTTTGGTTAATAAAATTTGACACATATTTTTCTTTAAAAAACCCCTAATTGCAAATATTGAATACATTAGGGGTAAAATTGAGACACTTATGAACAAAATTGAAAATGACCTAAAAATTTAAATGAGTATCAAATATATTTATTATCATTTAAGATATCCATAAACTTAGACTAAATGGAGAGTAGAGAATAAGTCATTGGGAATTGGGATGTCTAAGAAATTTTCAATTTTTTTAAAATTTATTTTCCAATACCCACTAGCGTTTGAGCCGCTTGAATACATCCAATCTTAAGTAGGTGACAATTATGGATCTAATCCGTTTTTTCTAAGCCCTTTTCAATATATGAGATAGAAGAATTGAACCTCTAATTTTTAATTTGACAATACAAATTTTATACAAATTGAGTTATGTTTAAGTTGACATTGTTTTAACCTATCATCTATTACCCCAAAAACACAAATATAGAAACTTACAGCAAAAGAAAACAGGCTACATTTCAAAATTAATTGGGGCTAAAGTCTAAAAGTGACAAAAAGTAATAAATAAAAAATGTAATTAATTTCATAGTGAGCTATGGCGGAACGAATTCTTAAAAGAGAGTGCAAATAAGAAATGTGAGAAGAGCCCCCATCACTCCGCTGGGGAGACAATAGAAGAGAAGAGAGTGTGAAATAGAAAGGAGTAGGCGAGCGAAGCTAGGTACTGGGTGTCCTCAAACGCCATTGTATTCCTCGTAAAGGTACACAACTCTCACTAAAAGCCACATCTTTCTGTACCTCCTTCTGGTACTGCTACAAGGTTTTCATTTCGCATTTGGGGGTTTACTTGTAGGGTTTTGAACTCCTTCGAGTTCTTCCATTCAGGTACATTTTCTCTTCTTCGTTTCATTTTCGTTTCTGGGTGTTTGATTTTTGTGGGTGTGAGCGAATTTGGAGCGAAGGAGGGAGAAAAACATGGGGCGATTAAGTTGTCTGTTGGGTCTGTCTTGGTTAACTGGACCAGTCAACTCTTGTTGTCTGTGATTATTTGAATTGTTTGCCCCGAGGGATTTCAGGGTTCATAATGTTGGACAATTTCTTTGCTTTCTTCCTTTTTGTTTTTCTCATTTTTGCTTGGAATTCGAGCTGGGTTTTTGTTTTTCCTGTCAAAAAGTAGTCTATAGATACAATTCTCACATCTTCGAGGGGTTATGGGTTTATGATTGTTGCTTTTAGTATACTTTCCATGCGCCTTTGCATGTTTGTTGCGTTGGTATTTGGTTGCTGCGAAAGTAGAAGAACAGGAATTGGACTGTGACCTTTGCCAAGAGGAAAAGAAAAGGGGAAAAATGATTGAAGAAAGAATGAAAATGGACTTTGTCTCTGTCTGCCTCATTCTCAGTTGACTTCGTTTGTCTTTTGTATGTAACAATTATAATGTTCAAAGTGTAAGGTTCTTATTCTGCTCATGATTGCTACATTCTTTCAAATGCATGCATGTGTGCAACCATGCATGAAATGGGAGACAAACTCCATCAAAGGCTTCTGGTACATTTACAGACAGTTTCATTTTATTTTTTGAAAATGTCTTCTATTATGAACTCAGCTATAAGCATCTTAAAGCTTCTTTTATTGGGCTCTTGTTGGTCATTATGTTTCAATTCCTCCTGAACTTCCCTGCATATGCTAAAAACTATGTATAACGAAAATACCATGCAATGTGCTCGTATTATTGACCTGAAAGCTCCAGTGCTAAACTTCTCATCGTGACACTGACCATTCTAACTTGTTATAAGAATTTTCATTTACTCTAATATATGACATTTTCGTTTTATCGATGGGTTTTTTTCCAGGAAAAAAAAAAAAAAAAAGAAAAGAAAAGGAAAAAGAAAGAAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCGTCTCAGCTTGTAGCTGTACTGAAAACAAATATGTAGTAACCTTCATTTCTTGTATAGAAAACTTACATTGCTTTTCCTTTAATCTGGTTGCTTTCTTCATTTCTTCTTTCTCTTTACTACAAGTGGATGGACAAATTCTTGCAATTTTTATTCTTTTGATTTTCATTAGGCTGTAACCATTCAGATCTAACATTGTATTTTTTTTTGTTTTGTATTACTTTGCAGCATTATATAAAAGTTACTGTTAAAGGAATGGAGGAGGCACCCTGTTGCTCATCTATTTTAGATGGGGAAATAGTGGGAATAAGATTTTCATTGGCCAATGGTCAAGAAATTGTAAGTAGAAGCTGTTAA

mRNA sequence

ATGAATTTAGAGTTAAACTATGCTCAAATCAGTGAGTTAGTGAGAGGGACAGAAAAGACTTATGGATTAAAATGTAAAGATTTTGAAATCAAATATGAGAAGAAAGATTTTGAAGTTTTAGTGGTTAGAAGGAGATATGAATCTAAAGGAAGATTACAAATGTGCATGCATGGGGAGTATGATTCAACAAGGGTTTTAACTGTGTCTGAAAATGCAGTTAGGGATGAGTGGATGCTTGATTATGGATGTTCCAATCATATGATTCATCATGGACGTTACTTTCAACATTTTGAGAAACTTGAAGGTGGGAAGGCTTTGGAGAATAATCAACATTGTGTTGTAAAAGACATAGGATATGTGAAGTTGAAACTCGATGATTTGGAGAAGTTCATGTCTGGTGTTGGGATCTTACAAACAACTTATAGTGATGCCTCCTTCAAATCTTCTCCGCAAGAGATAGACAAAGACAGACAGAGAAGAGTTGTTAGACCACTAACAAGATGTGATGAAGGTTTTGAACTCCTTCGAGTTCTTCCATTCAGGAAAAAAAAAAAAAAAAAGAAAAGAAAAGGAAAAAGAAAGAAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCGCTGTAACCATTCAGATCTAACATTGTATTTTTTTTTGTTTTGTATTACTTTGCAGCATTATATAAAAGTTACTGTTAAAGGAATGGAGGAGGCACCCTGTTGCTCATCTATTTTAGATGGGGAAATAGTGGGAATAAGATTTTCATTGGCCAATGGTCAAGAAATTGTAAGTAGAAGCTGTTAA

Coding sequence (CDS)

ATGAATTTAGAGTTAAACTATGCTCAAATCAGTGAGTTAGTGAGAGGGACAGAAAAGACTTATGGATTAAAATGTAAAGATTTTGAAATCAAATATGAGAAGAAAGATTTTGAAGTTTTAGTGGTTAGAAGGAGATATGAATCTAAAGGAAGATTACAAATGTGCATGCATGGGGAGTATGATTCAACAAGGGTTTTAACTGTGTCTGAAAATGCAGTTAGGGATGAGTGGATGCTTGATTATGGATGTTCCAATCATATGATTCATCATGGACGTTACTTTCAACATTTTGAGAAACTTGAAGGTGGGAAGGCTTTGGAGAATAATCAACATTGTGTTGTAAAAGACATAGGATATGTGAAGTTGAAACTCGATGATTTGGAGAAGTTCATGTCTGGTGTTGGGATCTTACAAACAACTTATAGTGATGCCTCCTTCAAATCTTCTCCGCAAGAGATAGACAAAGACAGACAGAGAAGAGTTGTTAGACCACTAACAAGATGTGATGAAGGTTTTGAACTCCTTCGAGTTCTTCCATTCAGGAAAAAAAAAAAAAAAAAGAAAAGAAAAGGAAAAAGAAAGAAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCGCTGTAACCATTCAGATCTAACATTGTATTTTTTTTTGTTTTGTATTACTTTGCAGCATTATATAAAAGTTACTGTTAAAGGAATGGAGGAGGCACCCTGTTGCTCATCTATTTTAGATGGGGAAATAGTGGGAATAAGATTTTCATTGGCCAATGGTCAAGAAATTGTAAGTAGAAGCTGTTAA

Protein sequence

MNLELNYAQISELVRGTEKTYGLKCKDFEIKYEKKDFEVLVVRRRYESKGRLQMCMHGEYDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKALENNQHCVVKDIGYVKLKLDDLEKFMSGVGILQTTYSDASFKSSPQEIDKDRQRRVVRPLTRCDEGFELLRVLPFRKKKKKKKRKGKRKKERKKEEEEEEEEEEEDRCNHSDLTLYFFLFCITLQHYIKVTVKGMEEAPCCSSILDGEIVGIRFSLANGQEIVSRSC
Homology
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BLAST of Clc01G07900 vs. NCBI nr
Match: KAG8378472.1 (hypothetical protein BUALT_Bualt08G0140700 [Buddleja alternifolia])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-07
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 60  YDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIG 119
           Y+S  VLTVS N   +EW+LD GC+ HM  +  +F  F KLEGG   L NN+ C V+ IG
Sbjct: 109 YESADVLTVSNNNSENEWILDSGCTFHMTPNRGWFDEFTKLEGGSVLLGNNKSCKVQGIG 168

Query: 120 YVKLKL-DDLEKFMSGV 135
            V++K+ + +EK +  V
Sbjct: 169 SVRIKMFNGIEKVLKQV 185

[Close]
BLAST of Clc01G07900 vs. NCBI nr
Match: KAG8362995.1 (hypothetical protein BUALT_BualtUnG0016000 [Buddleja alternifolia])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-07
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 60  YDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIG 119
           Y+S  VLTVS N   +EW+LD GC+ HM  +  +F  F KLEGG   L NN+ C V+ IG
Sbjct: 109 YESADVLTVSNNNSENEWILDSGCTFHMTPNRGWFDEFTKLEGGSVLLGNNKSCKVQGIG 168

Query: 120 YVKLKL-DDLEKFMSGV 135
            V++K+ + +EK +  V
Sbjct: 169 SVRIKMFNGIEKVLKQV 185

[Close]
BLAST of Clc01G07900 vs. NCBI nr
Match: KAG8367168.1 (hypothetical protein BUALT_Bualt16G0044500 [Buddleja alternifolia])

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-07
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 60  YDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIG 119
           Y+S  VLTVS N   +EW+L+ GC+ HM  +  +F  F KLEGG   L NN+ C V+ IG
Sbjct: 617 YESADVLTVSNNNSENEWILNLGCTFHMTPNRGWFDEFTKLEGGSVLLGNNKSCKVQGIG 676

Query: 120 YVKLKL-DDLEKFMSGV 135
            V++K+ + +EK +  V
Sbjct: 677 SVRIKMFNGIEKVLKQV 693

[Close]
BLAST of Clc01G07900 vs. NCBI nr
Match: KHN13665.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-05
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 45  RYESKGRLQMCMHGEYDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGK 104
           +Y  +  + +   G Y+S  VL++S     +EW+LD GCS HM  +  +F  +++++GGK
Sbjct: 250 KYNDESDIAVVADG-YESAEVLSISTKKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGK 309

Query: 105 AL-ENNQHCVVKDIGYVKLKLDD 127
            L  NN  C V  IG +KLK+ D
Sbjct: 310 VLMGNNMVCNVIGIGTIKLKVQD 331

[Close]
BLAST of Clc01G07900 vs. NCBI nr
Match: RVW35472.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-05
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 14  VRGTEKTYGLKCKDFEIKYEKKDFEVLVVRRRYESKGRLQMCMHGEYDSTRVLTVSENAV 73
           +RG E  +   C D      KK            ++G   + + G YDS  VL V+E   
Sbjct: 200 IRGKEGHFKKDCPDMRQNTIKKTV----------NEGDAAVILDG-YDSAEVLNVAEMDS 259

Query: 74  RDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIGYVKLK-LDDLEKFM 133
             EW+LD  CS HM     +F+ F++++GG   L NN+HC +  IG V++K  D +E+ +
Sbjct: 260 SKEWILDSRCSFHMCPIKAWFEDFKEVDGGHVLLGNNKHCKILGIGTVRIKHYDGIERVL 311

Query: 134 SGV 135
             V
Sbjct: 320 EDV 311

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BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match: A0A438DJ20 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3186 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.9e-06
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 14  VRGTEKTYGLKCKDFEIKYEKKDFEVLVVRRRYESKGRLQMCMHGEYDSTRVLTVSENAV 73
           +RG E  +   C D      KK            ++G   + + G YDS  VL V+E   
Sbjct: 200 IRGKEGHFKKDCPDMRQNTIKKTV----------NEGDAAVILDG-YDSAEVLNVAEMDS 259

Query: 74  RDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIGYVKLK-LDDLEKFM 133
             EW+LD  CS HM     +F+ F++++GG   L NN+HC +  IG V++K  D +E+ +
Sbjct: 260 SKEWILDSRCSFHMCPIKAWFEDFKEVDGGHVLLGNNKHCKILGIGTVRIKHYDGIERVL 311

Query: 134 SGV 135
             V
Sbjct: 320 EDV 311

[Close]
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match: A0A6J1JRG8 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111486902 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 240 MEEAPCCSSILDGEIVGIRFSLANGQEI 268
           MEEAPCCSSILDGEIVGIRF+LANGQEI
Sbjct: 1   MEEAPCCSSILDGEIVGIRFALANGQEI 28

[Close]
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match: A0A5D3CFX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00490 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 60  YDSTRVLTVSENAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIG 119
           Y+S  VL VS   ++D W++D GC+ HM HH  +  +F+K +GGK  L +N  C VK  G
Sbjct: 219 YESAEVLMVSHRDIQDAWIMDLGCTFHMTHHQDFLTNFQKGDGGKVLLGDNGTCDVKGTG 278

Query: 120 YVKLKLDD 127
            V++   D
Sbjct: 279 SVQIATHD 286

[Close]
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match: A0A438ITF4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2196 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 47/158 (29.75%), Postives = 75/158 (47.47%), Query Frame = 0 

Query: 15  RGTEKTYGLKC----KDFEIKYEKKDFEVLVVRRRYESKGRLQMCMHGEYDSTRVLTVSE 74
           R   KT   KC    K+   K +  D     V++   ++G   + + G YDS  VL V+E
Sbjct: 217 RSKSKTKKFKCFICHKEGHFKKDCPDRRQNTVKKTV-NEGDAAVILDG-YDSAEVLNVAE 276

Query: 75  NAVRDEWMLDYGCSNHMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIGYVKLK------ 134
                EW+LD GCS HM     +F+ F++ +GG   L NN+HC +   G V++K      
Sbjct: 277 VDSGKEWILDSGCSFHMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIE 336

Query: 135 --------LDDLEKFMSGVGILQTTYSDASFKSSPQEI 154
                   + +L++ +  +G+L    S  +FKS P  +
Sbjct: 337 RVLEDVRYIPELKRNLISLGMLDK--SGYTFKSEPNSL 370

[Close]
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match: A0A803P381 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 0 

Query: 26  KDFEIKYEKKDFEVLVVRRRYESKGRLQMCMHGEYDSTRVLTVSENAVRDEWMLDYGCSN 85
           K+   + E +  +  + R + + +G +     G Y+S  VL VS     D W+LD GCS 
Sbjct: 90  KEVHFRDECRALKAKLQRDKSKERGDVGEVTDG-YESADVLVVSSQESSDSWILDSGCSF 149

Query: 86  HMIHHGRYFQHFEKLEGGKA-LENNQHCVVKDIGYVKLKLDD 127
           HM      F  F+KL+GG   L +N+ C V  IG V+LKL D
Sbjct: 150 HMTPKRELFDSFKKLDGGSVLLGDNKACKVARIGTVRLKLHD 190

The following BLAST results are available for this feature:
BLAST of Clc01G07900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8378472.12.8e-0745.45hypothetical protein BUALT_Bualt08G0140700 [Buddleja alternifolia][more]
KAG8362995.12.8e-0745.45hypothetical protein BUALT_BualtUnG0016000 [Buddleja alternifolia][more]
KAG8367168.18.3e-0744.16hypothetical protein BUALT_Bualt16G0044500 [Buddleja alternifolia][more]
KHN13665.11.6e-0537.35Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
RVW35472.12.0e-0532.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
BLAST of Clc01G07900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438DJ209.9e-0632.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A6J1JRG81.3e-0596.43DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111486902 ... [more]
A0A5D3CFX61.3e-0541.18Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A438ITF41.3e-0529.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A803P3811.3e-0536.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
BLAST of Clc01G07900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 181..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G07900.2Clc01G07900.2mRNA