Clc01G06480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G06480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 6411922 .. 6415090 (-)
RNA-Seq Expression	Clc01G06480
Synteny	Clc01G06480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGAGAGGGAGATCGAGAACAGAGGGAGACGAGGGAAGAGGGAGAGTTGCACAGACCGAGAGCAAAGGGAGATCGAGAGAAGAGGGAGAGTTACATAGACCGAGAGCAGCGTAAGGACCAAGGGCACGGGAGAGTCACTCGTGAGGGAGAGGAAGGCGGCAAACAAAATGAAGATTGAAAAAGATACAAAACCCTAATTTGAAATTTCATTTTCACTTATAATATATATATATATATATATATATATATATAAAATTAGTAATTCGGGTTGGGTTGGGTCAATCCGAATTTTGAAAATTTCAACCCGAGACACAACCCAACCCGAAAAAAACCAAATAAAATAACCCAACCCAACCCTTCTACTTCAGGTTGGGTAGTCCGGGTTGTTTAGGTTGTCGGGTTATTTGAACACCCCTAAGGAAACCTCCTTGGCTCCACACTGGGAAATGGCAAAACATTCTGCACCACGCTTTCGACCCTGTGACACCATGTCTTATGGGTGTGATATTTAAAGGCTAAATTATAAAAAATGCCTTTGAACTATGCACTTTGCGTAAAAAATGCCCATAAACTTTCAAAAATTTCAAAAATACCCTTAAACTTTCAGAAAGAAAGAGTTTAAAAATACTATTGTCCTTAGTTTTCGATGGAAACCGTTAAAATTTTGTTTCAAAAATACCCCTCAACTTTTCAAAAGTTTCAAAAATACCCTTCACTAAAAAAAAGTTCAAAAATACCGTAAGTATATGAACATAAATCATTAATACCTCGTTGCAAAAATAACTTTAAAATTAAAAAAAAATAAAAAAATAAAAAAATAAAATTGCTCCAAACATTAATATGGTGATTAATTTATTTGAAGTTTTCTTAAGTTAGAAAAGAATTAATTTTAAAACAAATTATATAGATATATTCATTTTTTTATAGAGATACTCTTATTTTTCTCTTAATTTTTCAATTCTTAGCTTACACCAATTTTCCCACCAACCAAAATTTTAAGTTAAAACATAAAATATCACAAAATTCTAAAATCAAAATCTCCCCTTCAATATACCAAAACGACAAATAATCAATAATAAAAAATGTATTCGGTTATTAACACACACTCAACTACTAACATACGACTTTGTTAAAAGATTTATGTCCTAAATCCCTGATGATTCCTCTTTCTTCTTATTATAGTCCATATACCTTAACTGGAGTGTGCAATTTCACTCATTCATTTATTTTAGATAAACAAATGTCACACAATTAACAAAAAGGGAGAGTAAGAGGGTATTGAAGAAGGGAGGGGAGAAAAAAGATGGACAATAGAGAAGTAAAGCGACATTGACGGTTTTTATTCACACAACAGAAAGAGTATTTTTGAACTCATTTTGAAAGTTTAAGGGTATTTTTGAAACTTTTGAAAGTTAGAGATATTTTTGACACAAAGTATAAAGTTTAGGGGTATTTTGTATAATTTAGCCTATTTTAAAATTTTAAACTTAAAAAATATATGTGTTTAGTTTTATGAAAAATGAGACACTCAAAATTAAACAAAAATCATAAGGATCTCTATAGTAAAGAATTTGAAAACAAGGGATTCAATAAAAACAAAACTGTATTTCATGTTTTTAGATATGTGTTTGGTAGCAGATTATGGGCTCCTTTAGATTAACTTAAAAAATAGAGACAGTTGCAAATATAACAATCAGGGTCAAAGTATTTATAGATATAATATAATGCAAAAAAAAAAAAATGCAAATATAGCAAAATTTAGATTTTTCTTTCAAAGTCTATTAGCAATTGATCATATTAATAACGGGGTCTATCAATGATATACCATAATACTGATAGAGTCTATCATTGATAAGTTTTGTTATATTTGTAATTTTTAAAAAATGTTGCTGCACACCTAATTATTATCGCTAAAAGTGTTATCCAATGCAATTATTCGAAAATAAATGTTTCCAAAAATTCATTTTCATTTAAACATTTTTATAAGAACTGTTTGAATAAATACACTAATGGGTTTCAAAATCAATTTTGAGTGGTTGTCAAACATGTATCTTTCTTTTTAAATGACTTGTTTTTTTTAATTAAATATTTGAAAAAGTATTCCAAACACACTCAAAGAAATTGAATTTTAATTTAATCAGTACTTTAAAATGTGTGATGATTATTTTGTAGTATTATATAACCTATAATGTAGTACATAATACATCTTCTATTTTTTAAAAAATTAATTGAATTTAAAACATGATTATATTTTTAAATTTTTTATTTTTATTTAATATAATTTTATATTTTAAAATTTAAAATTCAAAATCTGTAGGGTGAAAACATATAAAAGTTGTTTTTAGAATTTACGCTACAAAATTTGGAAACGATTTTTAACCAAAATTCTTTACCAAATAACCCTTATTTTTTTCATTTTAATTTGAAGCATTTTTCTTTTTAAAATAAAACCTACAACCAAATCTTCATCTTCTTCTCTTCCCCTCCCTCTCATTGTCGTGAAAAGAGGCCAGCCGCAGCTCCTCCCCTTTTCGTTTCAGTCCCGGCACGGCCACCTAGCACAGAAACCCACAACGCCTTTCCTTTCCGGAGACGGGCACCTCCGATTTTGCGACCCACACGAATCTGGCGAGTTAAAGCGTGCGAATCCTTTGCTCGAGTTTTGGTAACTACCCATTCTATTTCCACCAAATATTTGAGTTACTCGCTTCTTAACTGCTTAAATAGGTAGGATTAAGCGTATTCGGACATGTTTCCTTTAGGATTCAAGTCCATTTGGATAAGTTTCAGTGGGTAGAACACTCTAAATATCCTTTCTAACTACTTTAAGGTTCTTTTAAGTTTGTCTCTAATATTTGTAATACTTGAAAGCTCGTATTTGTAGATCTGGAGTATTTTTGGAACTATCTGAACACTTTTTAGTGAGGACCCAAGATGTTTTTGTGAGTTTTAGCCATTAGAACTCTATTTAGATCCTTTTGGAATTAAATTAAAGTGCCGTAAATTAGTTTATAACTTTGGATATTCTCTATTTCTAGTTTAGACTCAGATTTGAGGCTTTCGGACTAAGGTTGAAGGTTGCTTTGGGTATGAATTATGATTACTCATTTTCGAGCACTTTTGAGACTCTGAATCAAGTTCTAGGTAAGTGGAATTCTACTTGA

mRNA sequence

ATGAGAGGAGAGGGAGATCGAGAACAGAGGGAGACGAGGGAAGAGGGAGAGTTGCACAGACCGAGAGCAAAGGGAGATCGAGAGAAGAGGGAGAGTTACATAGACCGAGAGCAGCGTAAGGACCAAGGGCACGGGAGAGTCACTCTCCCGGCACGGCCACCTAGCACAGAAACCCACAACGCCTTTCCTTTCCGGAGACGGGCACCTCCGATTTTGCGACCCACACGAATCTGGCGAGTTAAAGCGTGCGAATCCTTTGCTCGAGTTTTGTTTAGACTCAGATTTGAGGCTTTCGGACTAAGGTTGAAGGTTGCTTTGGGTATGAATTATGATTACTCATTTTCGAGCACTTTTGAGACTCTGAATCAAGTTCTAGGTAAGTGGAATTCTACTTGA

Coding sequence (CDS)

ATGAGAGGAGAGGGAGATCGAGAACAGAGGGAGACGAGGGAAGAGGGAGAGTTGCACAGACCGAGAGCAAAGGGAGATCGAGAGAAGAGGGAGAGTTACATAGACCGAGAGCAGCGTAAGGACCAAGGGCACGGGAGAGTCACTCTCCCGGCACGGCCACCTAGCACAGAAACCCACAACGCCTTTCCTTTCCGGAGACGGGCACCTCCGATTTTGCGACCCACACGAATCTGGCGAGTTAAAGCGTGCGAATCCTTTGCTCGAGTTTTGTTTAGACTCAGATTTGAGGCTTTCGGACTAAGGTTGAAGGTTGCTTTGGGTATGAATTATGATTACTCATTTTCGAGCACTTTTGAGACTCTGAATCAAGTTCTAGGTAAGTGGAATTCTACTTGA

Protein sequence

MRGEGDREQRETREEGELHRPRAKGDREKRESYIDREQRKDQGHGRVTLPARPPSTETHNAFPFRRRAPPILRPTRIWRVKACESFARVLFRLRFEAFGLRLKVALGMNYDYSFSSTFETLNQVLGKWNST

Homology

The following BLAST results are available for this feature:

BLAST of Clc01G06480 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G06480 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G06480 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G06480 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G06480.2	Clc01G06480.2	mRNA