Clc01G05810 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G05810
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA polymerase delta subunit 4
Location	ClcChr01: 5479808 .. 5481303 (-)
RNA-Seq Expression	Clc01G05810
Synteny	Clc01G05810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGGTTCATATCTCTTCTTTTCAAGTCTTCTCCGTTTCTTTACATTCCTGGATGTTTGCTTTCTTCGTTAGGTCTCTTGAAACTTCAATTACCGTTGGTTTTGGTTCGTTCATTAACGTGGTATGAATGGCCTGTGGACTTATGCCTCCTGATTCTGAAGGATTAAGCATGTTTCCGTTGAGAAGCTGTTGGATATTGGTTGCAACTAAGTTCTATAATAGTTGAATTAAAGATTCTCAATGTTTGGATCACTTTTGACGATTTCACTGAAAAATGTAGTCAATTTTTTATGCCTCGTGATTGTGAAGGATCAAGCATGTTGCAGTCAAGAAGTTGTTATCAGTTACAATCAATTTATTCCATAGTTGAATTAAGGATATCTATTGTTTGGATTTCTTTAACTTTCTTACTGTCAAATGTTATTAAATTAATACGTTTAGACTTGTGCCTCAGAGTTATGCACAAAGAAGCTTGAACACTTTAGTCTTATTGTGTTTGTGTCTCATACGTGTTGGTCATTTGGATACTTTGAAACTTGTTGGACACATATCGGATACTTGTCATGATTAACACAATAAATATGCATTAAACACGACTTATACAAAATATAGGTCTAATAAGAAGACACAGTAATCTAGGACAAGTATAAGAAACTTCAAGAGCGAATTACATTAAACTTAGTTTTTAGCATATAGATGCATGAACTTATTGGCTGTTTTAGTATTAAATTATATATATTTTTAAAATTGTGTCCTTTCCGCATCCATCTTACAACTTTAGAAAATGATGTGTCACCATGTCTATGTTATGTTGTGTTGTATCTATGTTTCATATTCGTATTCTACTTCTTTTATTAGCAAGGATTATGCATGTTGGAGTAAAAAAGTTGTGGGATACCAGTTATAATTAGGTTCTATAGTAGTGGAATTATGGATGCCAAATGCTAGATTTCTTTTAATTTTCGACTGGAAAAATCTTATCTAACAATGTGTCTGGACGTCAGATATGATGTGGCTATAATATCTGGATATTTTTGAAAAAAGGGTGTACCTTTTGCTTAATCTATTTCAATAATCTGCATTTTGTTCCATTTTGATCATTGAATTTTGTTTTAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

mRNA sequence

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

Coding sequence (CDS)

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

Protein sequence

MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLECLWDSRV

Homology

[Close]

BLAST of Clc01G05810 vs. NCBI nr
Match: XP_038875328.1 (DNA polymerase delta subunit 4 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 5.7e-59
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MASARGGLKDFYKQRKNSGISKANSKASKPSSRK KSPANSASLGSDAVQPAAL+SHGS 
Sbjct: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKIKSPANSASLGSDAVQPAALISHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYGA ENMLRQFDMNMAYGPCLGMTRMARWERAC LGLNPPKDIETLLKA  VQLE
Sbjct: 61  DLQDDYGALENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKARKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 127

[Close]

BLAST of Clc01G05810 vs. NCBI nr
Match: XP_008467236.1 (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo] >KAA0055161.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa] >TYK00302.1 DNA polymerase delta subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSNAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Clc01G05810 vs. NCBI nr
Match: XP_004143634.1 (uncharacterized protein LOC101209940 [Cucumis sativus] >KGN50409.1 hypothetical protein Csa_000175 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 5.0e-55
Identity = 115/127 (90.55%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Clc01G05810 vs. NCBI nr
Match: XP_022957680.1 (uncharacterized protein LOC111459143 [Cucurbita moschata])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 103/127 (81.10%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SD VQPAAL+SHGS 
Sbjct: 1   MASARGGMKDFYKQRKNSGV----SKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KLGLNPPK+IETLLK G VQLE
Sbjct: 61  DLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLE 120

Query: 121 CLWDSRV 128
           CLW SR+
Sbjct: 121 CLWASRI 123

[Close]

BLAST of Clc01G05810 vs. NCBI nr
Match: KAG6605696.1 (DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035605.1 DNA polymerase delta subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SDAVQPAAL+SHGS 
Sbjct: 1   MASARGGMKDFYKQRKNSGV----SKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KLGLNPPK+IE+LLK G VQLE
Sbjct: 61  DLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLKGGKVQLE 120

Query: 121 CLWDSRV 128
           CLW SR+
Sbjct: 121 CLWASRI 123

[Close]

BLAST of Clc01G05810 vs. ExPASy Swiss-Prot
Match: Q9HCU8 (DNA polymerase delta subunit 4 OS=Homo sapiens OX=9606 GN=POLD4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 63  QDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLE 122
           +D+  A   +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LK   G+ + +
Sbjct: 39  RDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKTHPGDPRFQ 98

Query: 123 C-LW 124
           C LW
Sbjct: 99  CSLW 102

[Close]

BLAST of Clc01G05810 vs. ExPASy Swiss-Prot
Match: Q3T0X9 (DNA polymerase delta subunit 4 OS=Bos taurus OX=9913 GN=POLD4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 72  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW 124
           +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +L++  G+ + +C LW
Sbjct: 48  LLRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPPEVHQVLQSHPGDPRFQCSLW 102

[Close]

BLAST of Clc01G05810 vs. ExPASy Swiss-Prot
Match: Q9CWP8 (DNA polymerase delta subunit 4 OS=Mus musculus OX=10090 GN=Pold4 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 72  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA 115
           +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LKA
Sbjct: 48  LLRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLKA 90

[Close]

BLAST of Clc01G05810 vs. ExPASy Swiss-Prot
Match: O59835 (DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdm1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-05
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 70  ENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLL 113
           E +L  FD    YGP LGMTRM RW+RA    LNPP+ +  +L
Sbjct: 94  EFILHHFDTTARYGPYLGMTRMQRWKRAKNFNLNPPETVGKIL 136

[Close]

BLAST of Clc01G05810 vs. ExPASy TrEMBL
Match: A0A5A7UNL0 (DNA polymerase delta subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00460 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.9e-56
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSNAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Clc01G05810 vs. ExPASy TrEMBL
Match: A0A1S3CT23 (DNA polymerase delta subunit 4 OS=Cucumis melo OX=3656 GN=LOC103504636 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.9e-56
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSNAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Clc01G05810 vs. ExPASy TrEMBL
Match: A0A0A0KND6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172885 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.4e-55
Identity = 115/127 (90.55%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Clc01G05810 vs. ExPASy TrEMBL
Match: A0A6J1H180 (uncharacterized protein LOC111459143 OS=Cucurbita moschata OX=3662 GN=LOC111459143 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.5e-49
Identity = 103/127 (81.10%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SD VQPAAL+SHGS 
Sbjct: 1   MASARGGMKDFYKQRKNSGV----SKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KLGLNPPK+IETLLK G VQLE
Sbjct: 61  DLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLE 120

Query: 121 CLWDSRV 128
           CLW SR+
Sbjct: 121 CLWASRI 123

[Close]

BLAST of Clc01G05810 vs. ExPASy TrEMBL
Match: A0A6J1K4T3 (uncharacterized protein LOC111491182 OS=Cucurbita maxima OX=3661 GN=LOC111491182 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 101/127 (79.53%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MASARGG+KDFYKQRKNSG+    SK SKPSS KTKS A+SA+L SD VQPAAL+SHGS 
Sbjct: 1   MASARGGMKDFYKQRKNSGV----SKVSKPSSGKTKSRASSATLDSDGVQPAALISHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KLGLNPPK+IETLLK G VQLE
Sbjct: 61  DLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKGGKVQLE 120

Query: 121 CLWDSRV 128
           CLW SR+
Sbjct: 121 CLWASRI 123

[Close]

BLAST of Clc01G05810 vs. TAIR 10
Match: AT1G09815.1 (polymerase delta 4 )

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-36
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MASARGGLKDFYKQRKNS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSH 60
           MA+    LK FYKQ K++   GISK     SKPSSRK  +P ++A+ GSD  QPAAL+SH
Sbjct: 1   MATTAKNLKGFYKQTKSNITGGISK-----SKPSSRKV-APKHAAAQGSDVTQPAALISH 60

Query: 61  GSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNV 120
           GS DL +DY   E MLRQFDMN+ YGPCLGMTR+ RWERA +LG+NPP +IE LLK G V
Sbjct: 61  GSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKV 120

Query: 121 QLECLWDSRV 128
           Q +CLW  RV
Sbjct: 121 QQDCLWQGRV 124

The following BLAST results are available for this feature:

BLAST of Clc01G05810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875328.1	5.7e-59	94.49	DNA polymerase delta subunit 4 [Benincasa hispida]	[more]
XP_008467236.1	1.0e-55	91.34	PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo] >KAA0055161.1 DNA polym...	[more]
XP_004143634.1	5.0e-55	90.55	uncharacterized protein LOC101209940 [Cucumis sativus] >KGN50409.1 hypothetical ...	[more]
XP_022957680.1	1.6e-48	81.10	uncharacterized protein LOC111459143 [Cucurbita moschata]	[more]
KAG6605696.1	1.6e-48	81.10	DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]

BLAST of Clc01G05810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9HCU8	1.6e-08	43.75	DNA polymerase delta subunit 4 OS=Homo sapiens OX=9606 GN=POLD4 PE=1 SV=1	[more]
Q3T0X9	3.6e-08	45.45	DNA polymerase delta subunit 4 OS=Bos taurus OX=9913 GN=POLD4 PE=1 SV=1	[more]
Q9CWP8	1.4e-07	53.49	DNA polymerase delta subunit 4 OS=Mus musculus OX=10090 GN=Pold4 PE=1 SV=1	[more]
O59835	1.7e-05	51.16	DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Clc01G05810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNL0	4.9e-56	91.34	DNA polymerase delta subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CT23	4.9e-56	91.34	DNA polymerase delta subunit 4 OS=Cucumis melo OX=3656 GN=LOC103504636 PE=4 SV=1	[more]
A0A0A0KND6	2.4e-55	90.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172885 PE=4 SV=1	[more]
A0A6J1H180	7.5e-49	81.10	uncharacterized protein LOC111459143 OS=Cucurbita moschata OX=3662 GN=LOC1114591...	[more]
A0A6J1K4T3	1.8e-47	79.53	uncharacterized protein LOC111491182 OS=Cucurbita maxima OX=3661 GN=LOC111491182...	[more]

BLAST of Clc01G05810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09815.1	1.9e-36	60.77	polymerase delta 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007218	DNA polymerase delta, subunit 4	PFAM	PF04081	DNA_pol_delta_4	coord: 63..113 e-value: 3.5E-20 score: 72.7
IPR007218	DNA polymerase delta, subunit 4	PANTHER	PTHR14303	DNA POLYMERASE DELTA SUBUNIT 4	coord: 5..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR14303:SF12	DNA POLYMERASE DELTA SUBUNIT 4	coord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G05810.1	Clc01G05810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000731	DNA synthesis involved in DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0043625	delta DNA polymerase complex
molecular_function	GO:0003887	DNA-directed DNA polymerase activity