Clc01G04070 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATTGATGCCCTTCAACCTCATCATCAATCTCTGCTTCCAATTAGTACTTTTTTACAGCATCATCTTTGTTTCACATTCTCTGTTCCTTCTACAACGACCGTACATACACAAATTACAACAAATGGTATATTTCTTTTTTAAATACCATTTTCTTTTGTGGGTTTAATTTAAAAGTTGTTTATATAAGTGGGTTTGTTTTTGTGTTAATTTTACACAGGTGAGTATGGTGAGAGAAGGTGAGAATAATTCAGTTCCCCAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCAATTCACAAGTCTTGTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCCGCCATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATGCTCTTCTTCAGGTATTGCCGTAACTTATCAGTTTAAGTTTTTTTTCGTACGAGACTAATATTTAGAATGTATGCATCTTGTTCTAATCACTCGCAAACACAAAAATTTTAAAAATAAGTAAAGAGAGTTTCTCACGTGACAAACTAAACTGAACAATTGAAAAGGATGCACAAATATGAATGTAGCCTAGAGTTTAATTATTTACGTATAAATGATACCCTAACGAGAAGTTTTATATTAATTTTGTCTCTCTGTATATGTCATTTTGAGTCTAATTGACATCCGTGTAATTACTTGTGAGATGTTCTTTCTTTTTTTTTTCCCTAATTTTCAAGTCAACATGATCTCAATTAGTTAACTAAGCTATGTGTCATTGTCAAAAAGTCATAAATTTGAATTCTCCACCTTTCATTTATATTGTAAAACTCAAAATTAATACTTAGGGGCAATTGTAGTATGACAGTCAAACTCAAAATATTAGCGGATATAGCACAATGAGAAAGATGGTAGGAGTTTATCAATAATAGAGACTACATTGCTTGTATGAGTTTATACCAATAAATTTTGCTATATTTGCAAAATTCTTTAATGATTGTGTTTTACACTTAATTATTATCCTAAAAGTACTACCATTGCAATTATATCCTAATAATAATAAAATTAGAATGCTTAAATTTAGGCTAAGTTTTGAATTTTTTTTTCCTTTCATTCTGGTGGTTGACAGATAAGAAGATATGTGTACCATGAGGTTATAAGGCTAGGAGATGCTGAGAAGCTGCTGAATTGTTCTCTTGTACAAGTAATTAATAATTATGGTTTGGCATGAAAATTAATAATTAGCGTTACATAAAATGTATTTACATCATATTTAATTGAACACAGCCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGGGGAAAGAGAAGAGGAGGATCGGGTAATCCGTGCATCACTTGTTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGGTATCTTTCTTTCTTATTCCCTTTTAACATTACTCTCCACTTTTCCAAACTACAACTAATTAAATAATTATTACTATACTTATACTTATAATTTTTTTAGTCAACCAATAATTTAATATAATATGAAAGCAGATACTCCAAGCATTCACGCATTCAAAGATTTAAGTTGTAATTTCATTATAGTTATTCCCAAAATATTAATATCATAGATACAAGGGTGAAGTTTCCACTTTCTTACCAATAATTTAGGGTTAATGTTTAATTATTGTTTTTTTTTTTTTTTTTTTAATCAATCAAAAGTTGAATGGCAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATCTTCCGCCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACCTCGATTACCCGTCCGCCGTCTCCAAAACCGCCGCCGCCGTCAATTTAGTCAAAAAGAACCGTAGCGGTGTGAAGTCGTTAGCGGCGGTTCTATGCCGGCCGAGATGCTTTCCCATCTCCGATATCGCCACCGCCGTGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACTTGA ATGACATTGATGCCCTTCAACCTCATCATCAATCTCTGCTTCCAATTAGTACTTTTTTACAGCATCATCTTTGTTTCACATTCTCTGTTCCTTCTACAACGACCGTACATACACAAATTACAACAAATGGTGAGTATGGTGAGAGAAGGTGAGAATAATTCAGTTCCCCAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCAATTCACAAGTCTTGTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCCGCCATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATGCTCTTCTTCAGATAAGAAGATATGTGTACCATGAGGTTATAAGGCTAGGAGATGCTGAGAAGCTGCTGAATTGTTCTCTTGTACAACCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGGGGAAAGAGAAGAGGAGGATCGGGTAATCCGTGCATCACTTGTTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGTTGAATGGCAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATCTTCCGCCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACCTCGATTACCCGTCCGCCGTCTCCAAAACCGCCGCCGCCGTCAATTTAGTCAAAAAGAACCGTAGCGGTGTGAAGTCGTTAGCGGCGGTTCTATGCCGGCCGAGATGCTTTCCCATCTCCGATATCGCCACCGCCGTGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACTTGA ATGACATTGATGCCCTTCAACCTCATCATCAATCTCTGCTTCCAATTAGTACTTTTTTACAGCATCATCTTTGTTTCACATTCTCTGTTCCTTCTACAACGACCGTACATACACAAATTACAACAAATGGTGAGTATGGTGAGAGAAGGTGAGAATAATTCAGTTCCCCAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCAATTCACAAGTCTTGTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCCGCCATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATGCTCTTCTTCAGATAAGAAGATATGTGTACCATGAGGTTATAAGGCTAGGAGATGCTGAGAAGCTGCTGAATTGTTCTCTTGTACAACCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGGGGAAAGAGAAGAGGAGGATCGGGTAATCCGTGCATCACTTGTTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGTTGAATGGCAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATCTTCCGCCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACCTCGATTACCCGTCCGCCGTCTCCAAAACCGCCGCCGCCGTCAATTTAGTCAAAAAGAACCGTAGCGGTGTGAAGTCGTTAGCGGCGGTTCTATGCCGGCCGAGATGCTTTCCCATCTCCGATATCGCCACCGCCGTGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACTTGA MTLMPFNLIINLCFQLVLFYSIIFVSHSLFLLQRPYIHKLQQMVSMVREGENNSVPQWLEILLGEKFFTPCSIHKSCKKNDKTFFCLFCRSAICFSCFSSHRTHALLQIRRYVYHEVIRLGDAEKLLNCSLVQPYTTNRAKVVFLKHRRGKRRGGSGNPCITCFRNLQYPYLFCSLSCKLNGKIEIINKQKRNYDHLPPRSTTQTQTPTSVLDLDYPSAVSKTAAAVNLVKKNRSGVKSLAAVLCRPRCFPISDIATAVNRRKGVPQRSPLT Homology
BLAST of Clc01G04070 vs. NCBI nr
Match: XP_038876089.1 (uncharacterized protein LOC120068405 [Benincasa hispida]) HSP 1 Score: 389.8 bits (1000), Expect = 1.9e-104 Identity = 196/235 (83.40%), Postives = 209/235 (88.94%), Query Frame = 0
BLAST of Clc01G04070 vs. NCBI nr
Match: XP_008437715.1 (PREDICTED: uncharacterized protein LOC103483060 [Cucumis melo]) HSP 1 Score: 372.5 bits (955), Expect = 3.2e-99 Identity = 194/245 (79.18%), Postives = 207/245 (84.49%), Query Frame = 0
BLAST of Clc01G04070 vs. NCBI nr
Match: XP_011654791.1 (uncharacterized protein LOC101221644 [Cucumis sativus] >KGN50223.1 hypothetical protein Csa_000124 [Cucumis sativus]) HSP 1 Score: 372.5 bits (955), Expect = 3.2e-99 Identity = 194/252 (76.98%), Postives = 206/252 (81.75%), Query Frame = 0
BLAST of Clc01G04070 vs. NCBI nr
Match: KAG6579424.1 (hypothetical protein SDJN03_23872, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 323.9 bits (829), Expect = 1.3e-84 Identity = 166/235 (70.64%), Postives = 183/235 (77.87%), Query Frame = 0
BLAST of Clc01G04070 vs. NCBI nr
Match: KAA0039689.1 (putative PLATZ transcription factor family protein [Cucumis melo var. makuwa]) HSP 1 Score: 241.5 bits (615), Expect = 8.4e-60 Identity = 139/232 (59.91%), Postives = 158/232 (68.10%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 9.4e-38 Identity = 98/254 (38.58%), Postives = 140/254 (55.12%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy TrEMBL
Match: A0A0A0KKT3 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G160750 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99 Identity = 194/252 (76.98%), Postives = 206/252 (81.75%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy TrEMBL
Match: A0A1S3AUS9 (uncharacterized protein LOC103483060 OS=Cucumis melo OX=3656 GN=LOC103483060 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99 Identity = 194/245 (79.18%), Postives = 207/245 (84.49%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy TrEMBL
Match: A0A5A7TEM7 (Putative PLATZ transcription factor family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00200 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 4.1e-60 Identity = 139/232 (59.91%), Postives = 158/232 (68.10%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy TrEMBL
Match: A0A2N9EQ66 (B box-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4621 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 4.5e-51 Identity = 120/253 (47.43%), Postives = 150/253 (59.29%), Query Frame = 0
BLAST of Clc01G04070 vs. ExPASy TrEMBL
Match: A0A7N2N1T9 (B box-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 4.5e-51 Identity = 122/252 (48.41%), Postives = 150/252 (59.52%), Query Frame = 0
BLAST of Clc01G04070 vs. TAIR 10
Match: AT3G60670.1 (PLATZ transcription factor family protein ) HSP 1 Score: 169.1 bits (427), Expect = 5.0e-42 Identity = 103/253 (40.71%), Postives = 140/253 (55.34%), Query Frame = 0
BLAST of Clc01G04070 vs. TAIR 10
Match: AT1G31040.1 (PLATZ transcription factor family protein ) HSP 1 Score: 159.1 bits (401), Expect = 5.1e-39 Identity = 95/246 (38.62%), Postives = 133/246 (54.07%), Query Frame = 0
BLAST of Clc01G04070 vs. TAIR 10
Match: AT2G12646.1 (PLATZ transcription factor family protein ) HSP 1 Score: 158.7 bits (400), Expect = 6.7e-39 Identity = 98/254 (38.58%), Postives = 140/254 (55.12%), Query Frame = 0
BLAST of Clc01G04070 vs. TAIR 10
Match: AT1G32700.1 (PLATZ transcription factor family protein ) HSP 1 Score: 124.0 bits (310), Expect = 1.8e-28 Identity = 79/225 (35.11%), Postives = 117/225 (52.00%), Query Frame = 0
BLAST of Clc01G04070 vs. TAIR 10
Match: AT1G43000.1 (PLATZ transcription factor family protein ) HSP 1 Score: 117.9 bits (294), Expect = 1.3e-26 Identity = 78/226 (34.51%), Postives = 117/226 (51.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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