Clc01G00460 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTCTCTCTCTCTCTCTGTTTCTAAAGGTTGTATTAAAGTCTGAACTACTACTCTACACAATCTCTCTAACTCCCTACACTCACATCTATTTACTCATTTCTACCAACCCATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAGCCCAAGTATTTCCAACTTTTTTTTTAAAATTTATTTTATATTTATCTTATTATTTATTAATTTTTTTAACATCTTTACATAAATATGTCACTTAAATGCTATTATATTTGTTTTAACTTAAATGCTATTATATTTGTTTTTAACTCCACTAACCAAATTTATTTATCCACTTACACATAACTCAATTGGTATCAATTAAACATCTCTTATCCTATTTGTTTGTTGAACTAAATAATAATAATATATAAAATGAAATTTATTTACCAAGTTATTAGATATCTCTGCATATGCCTAAATATATTAATAAAGTAATAATTCAAATGACACAACTATCTATAAAATGACTTAATTGAAAATCTCTAATACTTTACAGGTAGAATTCATATTTTAAAAAAAAGGTTAAGGCTAAATTTAAAATTTAGTCAAAGGATTTGGCTCCAACTAATATACTTAACATTTTCATTTCTTTTGAGTTCATCAACCAATAGAGAGGTGTGCGTATAAAAGTTGCAAAATGAAAGCATGAGAACTACCCAAGTTAAGTGTCGAGCAAGCAAAATACTAGATAATATGTGCTTGTATTTATATGGAGAGTTTAATTATATAATTGGCTAATTAAAAAAATTATTATGTAGTTAAAATGAGACTTCAACTAGTTTAAGTTAAAAATAATAAATAATAGTTGAGAAATTATGTTTTACGACCTACCACAAAACTTTTGGTAGTTAGAAAAGAGAATAAGAGAGAACATACACATTTTCTTTAAAAGCAAACATGTTCACAAACTTTTATTTCAGTTGAGTTATTTATGTTCTTGTTCACAAATGTACGTTAAAAACTTACTACTGGGAGAGGGAAAATAATTTGAAATTATTTTCTAAAACATAATTATATTGTTAGGCATAGTTATTATAAAAGCTCTCTTTTATTATTTTGTTAGTACTATTATTAATAACCCTAATTAATTAATCATATATCTAGCACAAACATACTAAAGGTAAGAATTTGATTACGACTCAATTTCATTGCAGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTTCGTGGAGACTGAAGAACAAAAGATAATCAACTTAAAAAAGCCTTTGCATATGCTTGAATCTAAAGAAGGATTATGTGTACACATTGGCTAATTGTACTTCATGTTTAGCTTACAACTTAAACTCACTTCTAAATTTAAAAAATTGTATATGTTAAAAAGAAAATTTGAGCCTTCATATCTAATTTATATAAACAGAGACATATATTCAAAAATTAAGATCGCGTATCAATTGTTCGTAGAATAAAGTTCACTACTATGGTTCTCACGTATCCTAAGTAATGTATCGACCATGAAGGCTCAGGTTTTGTGCAAACAAGTCGATTCAACTACCATGAATGAAGTGATCTTGATCCAAGGTAGAGAGTTACAATTTATGAGGTGAAGTCTTGCC TTTCTCTCTCTCTCTCTCTGTTTCTAAAGGTTGTATTAAAGTCTGAACTACTACTCTACACAATCTCTCTAACTCCCTACACTCACATCTATTTACTCATTTCTACCAACCCATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTTCGTGGAGACTGAAGAACAAAAGATAATCAACTTAAAAAAGCCTTTGCATATGCTTGAATCTAAAGAAGGATTATGTGTACACATTGGCTAATTGTACTTCATGTTTAGCTTACAACTTAAACTCACTTCTAAATTTAAAAAATTGTATATGTTAAAAAGAAAATTTGAGCCTTCATATCTAATTTATATAAACAGAGACATATATTCAAAAATTAAGATCGCGTATCAATTGTTCGTAGAATAAAGTTCACTACTATGGTTCTCACGTATCCTAAGTAATGTATCGACCATGAAGGCTCAGGTTTTGTGCAAACAAGTCGATTCAACTACCATGAATGAAGTGATCTTGATCCAAGGTAGAGAGTTACAATTTATGAGGTGAAGTCTTGCC ATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGAGCACTCTACCGTCTCCCACGACGGTGCTCGACGGCCCAGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGCCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTTCGTGGAGACTGAAGAACAAAAGATAA MCSEPPHTVETTSTPTLPLSSLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPALRELPPPPRLLNEAKQSTLPSPTTVLDGPERAGDGSKRWGSFRMFKDFVGGNGNDPSATGVDGGGGSGRFRRKRTSSLSVSSYARSHFLVNIYESFKQVVSWRLKNKR Homology
BLAST of Clc01G00460 vs. NCBI nr
Match: XP_038875428.1 (uncharacterized protein LOC120067888 [Benincasa hispida]) HSP 1 Score: 251.1 bits (640), Expect = 6.8e-63 Identity = 131/156 (83.97%), Postives = 135/156 (86.54%), Query Frame = 0
BLAST of Clc01G00460 vs. NCBI nr
Match: XP_022958693.1 (uncharacterized protein LOC111459844 [Cucurbita moschata]) HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57 Identity = 129/173 (74.57%), Postives = 138/173 (79.77%), Query Frame = 0
BLAST of Clc01G00460 vs. NCBI nr
Match: XP_022995989.1 (uncharacterized protein At4g00950-like [Cucurbita maxima]) HSP 1 Score: 232.6 bits (592), Expect = 2.5e-57 Identity = 129/173 (74.57%), Postives = 139/173 (80.35%), Query Frame = 0
BLAST of Clc01G00460 vs. NCBI nr
Match: KAG6605789.1 (hypothetical protein SDJN03_03106, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035754.1 hypothetical protein SDJN02_02552, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 228.4 bits (581), Expect = 4.7e-56 Identity = 128/173 (73.99%), Postives = 137/173 (79.19%), Query Frame = 0
BLAST of Clc01G00460 vs. NCBI nr
Match: KAA0042546.1 (uncharacterized protein E6C27_scaffold44G00400 [Cucumis melo var. makuwa] >TYK05950.1 uncharacterized protein E5676_scaffold376G00430 [Cucumis melo var. makuwa]) HSP 1 Score: 198.4 bits (503), Expect = 5.2e-47 Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0
BLAST of Clc01G00460 vs. ExPASy TrEMBL
Match: A0A6J1H3S6 (uncharacterized protein LOC111459844 OS=Cucurbita moschata OX=3662 GN=LOC111459844 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 7.1e-58 Identity = 129/173 (74.57%), Postives = 138/173 (79.77%), Query Frame = 0
BLAST of Clc01G00460 vs. ExPASy TrEMBL
Match: A0A6J1K7H0 (uncharacterized protein At4g00950-like OS=Cucurbita maxima OX=3661 GN=LOC111491336 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57 Identity = 129/173 (74.57%), Postives = 139/173 (80.35%), Query Frame = 0
BLAST of Clc01G00460 vs. ExPASy TrEMBL
Match: A0A5A7TKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00430 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 2.5e-47 Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0
BLAST of Clc01G00460 vs. ExPASy TrEMBL
Match: A0A1S3AU39 (uncharacterized protein LOC103482969 OS=Cucumis melo OX=3656 GN=LOC103482969 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 2.8e-46 Identity = 121/180 (67.22%), Postives = 134/180 (74.44%), Query Frame = 0
BLAST of Clc01G00460 vs. ExPASy TrEMBL
Match: A0A0A0KJF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139380 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41 Identity = 117/188 (62.23%), Postives = 130/188 (69.15%), Query Frame = 0
BLAST of Clc01G00460 vs. TAIR 10
Match: AT4G27810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14 Identity = 71/191 (37.17%), Postives = 90/191 (47.12%), Query Frame = 0
BLAST of Clc01G00460 vs. TAIR 10
Match: AT5G53030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12 Identity = 73/218 (33.49%), Postives = 91/218 (41.74%), Query Frame = 0
BLAST of Clc01G00460 vs. TAIR 10
Match: AT5G53030.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10 Identity = 68/203 (33.50%), Postives = 83/203 (40.89%), Query Frame = 0
BLAST of Clc01G00460 vs. TAIR 10
Match: AT5G51680.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04 Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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