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Clc00G01560 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.gccaaacaggtgaaaacaatctcagagcttgaaattattatatgatatccaaaaccatgcagagttatgtaggaatttttggaaatggtttgtggaatatcaatagtgttagcatctgactctgctctgccaatgtatatgagatctcaatcaacaagatatgcctcaggacagtttaagctcaagaatttacaaatcatttctaacttgtaacgatcccaaaggcatagttgataagagcactgtcagaaaaaagaaagttgctccatcaaaaatggagaaacgggtcaaaagccggacagctaggaagaacttatacgaattttcagactgtaagttacaaggagaggaaacaaccgtcaaagaactaagagatgaattcagtagtccatcctcatctcaacttatggaagtgtccagaggagctcagaagctgaatcggacaattgatttgtggtctaatgggatgaaatatgatagacaatctgaccaaattgcaagagatttgtttgaaggagctcttgatttgcagcagtccttggtcattctagggaaattgcagaaagcttcaaggtatatgactcagatgaggaaaaatgaacggatagacaggaaaacaactggaaatatgggcatggagagaacacgcttcaaccaaaatgaatttcaaaaaccccggctttcggctgattattcttatggaatggtgctgaggaactga gccaaacaggtgaaaacaatctcagagcttgaaattattatatgatatccaaaaccatgcagagttatgtaggaatttttggaaatggtttgtggaatatcaatagtgttagcatctgactctgctctgccaatgtatatgagatctcaatcaacaagatatgcctcaggacagtttaagctcaagaatttacaaatcatttctaacttgtaacgatcccaaaggcatagttgataagagcactgtcagaaaaaagaaagttgctccatcaaaaatggagaaacgggtcaaaagccggacagctaggaagaacttatacgaattttcagactgtaagttacaaggagaggaaacaaccgtcaaagaactaagagatgaattcagtagtccatcctcatctcaacttatggaagtgtccagaggagctcagaagctgaatcggacaattgatttgtggtctaatgggatgaaatatgatagacaatctgaccaaattgcaagagatttgtttgaaggagctcttgatttgcagcagtccttggtcattctagggaaattgcagaaagcttcaaggtatatgactcagatgaggaaaaatgaacggatagacaggaaaacaactggaaatatgggcatggagagaacacgcttcaaccaaaatgaatttcaaaaaccccggctttcggctgattattcttatggaatggtgctgaggaactga atgcctcaggacagtttaagctcaagaatttacaaatcatttctaacttgtaacgatcccaaaggcatagttgataagagcactgtcagaaaaaagaaagttgctccatcaaaaatggagaaacgggtcaaaagccggacagctaggaagaacttatacgaattttcagactgtaagttacaaggagaggaaacaaccgtcaaagaactaagagatgaattcagtagtccatcctcatctcaacttatggaagtgtccagaggagctcagaagctgaatcggacaattgatttgtggtctaatgggatgaaatatgatagacaatctgaccaaattgcaagagatttgtttgaaggagctcttgatttgcagcagtccttggtcattctagggaaattgcagaaagcttcaaggtatatgactcagatgaggaaaaatgaacggatagacaggaaaacaactggaaatatgggcatggagagaacacgcttcaaccaaaatgaatttcaaaaaccccggctttcggctgattattcttatggaatggtgctgaggaactga MPQDSLSSRIYKSFLTCNDPKGIVDKSTVRKKKVAPSKMEKRVKSRTARKNLYEFSDCKLQGEETTVKELRDEFSSPSSSQLMEVSRGAQKLNRTIDLWSNGMKYDRQSDQIARDLFEGALDLQQSLVILGKLQKASRYMTQMRKNERIDRKTTGNMGMERTRFNQNEFQKPRLSADYSYGMVLRN Homology
BLAST of Clc00G01560 vs. NCBI nr
Match: XP_038889585.1 (uncharacterized protein LOC120079462 [Benincasa hispida]) HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81 Identity = 160/181 (88.40%), Postives = 173/181 (95.58%), Query Frame = 0
BLAST of Clc00G01560 vs. NCBI nr
Match: XP_011648656.1 (uncharacterized protein LOC105434538 [Cucumis sativus] >KGN60613.1 hypothetical protein Csa_019307 [Cucumis sativus]) HSP 1 Score: 297.4 bits (760), Expect = 8.8e-77 Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
BLAST of Clc00G01560 vs. NCBI nr
Match: XP_008458399.1 (PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo] >KAA0061551.1 biorientation of chromosomes in cell division protein 1-like 1 [Cucumis melo var. makuwa] >TYK10721.1 biorientation of chromosomes in cell division protein 1-like 1 [Cucumis melo var. makuwa]) HSP 1 Score: 294.3 bits (752), Expect = 7.5e-76 Identity = 155/181 (85.64%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Clc00G01560 vs. NCBI nr
Match: XP_023536795.1 (uncharacterized protein LOC111798072 [Cucurbita pepo subsp. pepo] >XP_023536796.1 uncharacterized protein LOC111798072 [Cucurbita pepo subsp. pepo] >XP_023536797.1 uncharacterized protein LOC111798072 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 277.7 bits (709), Expect = 7.3e-71 Identity = 142/181 (78.45%), Postives = 163/181 (90.06%), Query Frame = 0
BLAST of Clc00G01560 vs. NCBI nr
Match: XP_022938261.1 (uncharacterized protein LOC111444401 [Cucurbita moschata] >XP_022938262.1 uncharacterized protein LOC111444401 [Cucurbita moschata] >XP_022938263.1 uncharacterized protein LOC111444401 [Cucurbita moschata]) HSP 1 Score: 275.4 bits (703), Expect = 3.6e-70 Identity = 141/181 (77.90%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of Clc00G01560 vs. ExPASy TrEMBL
Match: A0A0A0LFV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004140 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 4.3e-77 Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
BLAST of Clc00G01560 vs. ExPASy TrEMBL
Match: A0A5D3CG00 (Biorientation of chromosomes in cell division protein 1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00310 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 3.6e-76 Identity = 155/181 (85.64%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Clc00G01560 vs. ExPASy TrEMBL
Match: A0A1S3C7S3 (uncharacterized protein LOC103497820 OS=Cucumis melo OX=3656 GN=LOC103497820 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 3.6e-76 Identity = 155/181 (85.64%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Clc00G01560 vs. ExPASy TrEMBL
Match: A0A6J1FDK4 (uncharacterized protein LOC111444401 OS=Cucurbita moschata OX=3662 GN=LOC111444401 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70 Identity = 141/181 (77.90%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of Clc00G01560 vs. ExPASy TrEMBL
Match: A0A6J1HRF8 (uncharacterized protein LOC111465449 OS=Cucurbita maxima OX=3661 GN=LOC111465449 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70 Identity = 142/181 (78.45%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of Clc00G01560 vs. TAIR 10
Match: AT3G24630.1 (unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). ) HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13 Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 0
BLAST of Clc00G01560 vs. TAIR 10
Match: AT5G42710.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 8.4e-09 Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 0
BLAST of Clc00G01560 vs. TAIR 10
Match: AT5G42710.2 (unknown protein; INVOLVED IN: biological_process unknown. ) HSP 1 Score: 58.2 bits (139), Expect = 8.4e-09 Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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