Clc00G01390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc00G01390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Biorientation of chromosomes in cell division protein 1-like 1
Location	ClcCtg008: 16862 .. 17230 (-)
RNA-Seq Expression	Clc00G01390
Synteny	Clc00G01390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTAGAACCTCAATCAAAGCAAATGCATGAAAATCTACACAAACAGTTTCTTGATGAGAAGATTTCAGATCGCCAGAGGCCCAAGTTTAGCATGGAGATGGCTGAGACAAAGAAACTGAAGTCTGCTACACACAAGATAGCACAGAGAACCTTGGAGTCAAATCTTGACACCCAGCAATCCAAAGGCATTCTTAAACATTCTGCAAAGGAAGTGAATGCCTACTCCAATTATTCGAGCTACAGACGTTCAAGAGAAGAGTTAACCCATACTGCCCCACCAATTGTACTTCTAAAACCTGTGCGCGTTTCACAGGTTGAATTGGAGGACCGTCAAGCACAAGTATTTGAGAAGATGAAGCATTGA

mRNA sequence

ATGGGTCTAGAACCTCAATCAAAGCAAATGCATGAAAATCTACACAAACAGTTTCTTGATGAGAAGATTTCAGATCGCCAGAGGCCCAAGTTTAGCATGGAGATGGCTGAGACAAAGAAACTGAAGTCTGCTACACACAAGATAGCACAGAGAACCTTGGAGTCAAATCTTGACACCCAGCAATCCAAAGGCATTCTTAAACATTCTGCAAAGGAAGTGAATGCCTACTCCAATTATTCGAGCTACAGACGTTCAAGAGAAGAGTTAACCCATACTGCCCCACCAATTGTACTTCTAAAACCTGTGCGCGTTTCACAGGTTGAATTGGAGGACCGTCAAGCACAAGTATTTGAGAAGATGAAGCATTGA

Coding sequence (CDS)

ATGGGTCTAGAACCTCAATCAAAGCAAATGCATGAAAATCTACACAAACAGTTTCTTGATGAGAAGATTTCAGATCGCCAGAGGCCCAAGTTTAGCATGGAGATGGCTGAGACAAAGAAACTGAAGTCTGCTACACACAAGATAGCACAGAGAACCTTGGAGTCAAATCTTGACACCCAGCAATCCAAAGGCATTCTTAAACATTCTGCAAAGGAAGTGAATGCCTACTCCAATTATTCGAGCTACAGACGTTCAAGAGAAGAGTTAACCCATACTGCCCCACCAATTGTACTTCTAAAACCTGTGCGCGTTTCACAGGTTGAATTGGAGGACCGTCAAGCACAAGTATTTGAGAAGATGAAGCATTGA

Protein sequence

MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQQSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEKMKH

Homology

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BLAST of Clc00G01390 vs. NCBI nr
Match: XP_038889585.1 (uncharacterized protein LOC120079462 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 104/119 (87.39%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQSKQM ENLHKQFLDE  SDRQRPK+SMEMAETK  KSAT KIAQRTLESNLDTQ
Sbjct: 257 MGLEPQSKQMQENLHKQFLDESNSDRQRPKYSMEMAETKNPKSATRKIAQRTLESNLDTQ 316

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGI KHSAKE+N Y NYSSY  SREELTHTAPPIVLLKPVRVSQVELE+RQAQVFE+
Sbjct: 317 QSKGINKHSAKEMNDYFNYSSYIHSREELTHTAPPIVLLKPVRVSQVELEERQAQVFEE 375

[Close]

BLAST of Clc00G01390 vs. NCBI nr
Match: XP_011648656.1 (uncharacterized protein LOC105434538 [Cucumis sativus] >KGN60613.1 hypothetical protein Csa_019307 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQS QM+ENLHK+FLDEKISDRQRP+FSM++AETKK KSA HKI+Q+T ESNL+TQ
Sbjct: 256 MGLEPQSSQMYENLHKRFLDEKISDRQRPEFSMKVAETKKPKSAIHKISQKTSESNLNTQ 315

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGILKH A EVN Y NYSSY RSREE TH A PIVLLKPVRVSQVE E+RQAQVFE+
Sbjct: 316 QSKGILKHPANEVNDYFNYSSYSRSREEPTHAAQPIVLLKPVRVSQVEWEERQAQVFEE 374

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BLAST of Clc00G01390 vs. NCBI nr
Match: XP_008458399.1 (PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo] >KAA0061551.1 biorientation of chromosomes in cell division protein 1-like 1 [Cucumis melo var. makuwa] >TYK10721.1 biorientation of chromosomes in cell division protein 1-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQS QM+ENLHKQFLDEKISDRQRP+FSME+AETKK KSA HKIAQ+T ESN  TQ
Sbjct: 256 MGLEPQSSQMYENLHKQFLDEKISDRQRPEFSMEVAETKKPKSAIHKIAQKTSESN--TQ 315

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGILKH A EVN Y NYSSY  SREE TH A PIVLLKPVRVSQVE E+RQAQVFE+
Sbjct: 316 QSKGILKHPANEVNDYFNYSSYSHSREESTHAAQPIVLLKPVRVSQVEWEERQAQVFEE 372

[Close]

BLAST of Clc00G01390 vs. NCBI nr
Match: KAG6599452.1 (hypothetical protein SDJN03_09230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 88/119 (73.95%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLK            SNLDTQ
Sbjct: 247 MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLK------------SNLDTQ 306

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           Q KGILKH  KE + + N SSY  S EELTHTAPPIVLL+P+RV+QVE E+RQA VFE+
Sbjct: 307 QFKGILKHLTKEASDHFNNSSYSHSGEELTHTAPPIVLLQPMRVAQVESEERQAHVFEE 353

[Close]

BLAST of Clc00G01390 vs. NCBI nr
Match: KAG7030430.1 (hypothetical protein SDJN02_08777, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 88/119 (73.95%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLK            SNLDTQ
Sbjct: 247 MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLK------------SNLDTQ 306

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           Q KGILKH  KE + + N SSY  S EELTHTAPPIVLL+P+RV+QVE E+RQA VFE+
Sbjct: 307 QFKGILKHLTKEASDHFNNSSYSHSGEELTHTAPPIVLLQPMRVAQVESEERQAHVFEE 353

[Close]

BLAST of Clc00G01390 vs. ExPASy TrEMBL
Match: A0A0A0LFV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004140 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.0e-42
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQS QM+ENLHK+FLDEKISDRQRP+FSM++AETKK KSA HKI+Q+T ESNL+TQ
Sbjct: 256 MGLEPQSSQMYENLHKRFLDEKISDRQRPEFSMKVAETKKPKSAIHKISQKTSESNLNTQ 315

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGILKH A EVN Y NYSSY RSREE TH A PIVLLKPVRVSQVE E+RQAQVFE+
Sbjct: 316 QSKGILKHPANEVNDYFNYSSYSRSREEPTHAAQPIVLLKPVRVSQVEWEERQAQVFEE 374

[Close]

BLAST of Clc00G01390 vs. ExPASy TrEMBL
Match: A0A5D3CG00 (Biorientation of chromosomes in cell division protein 1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00310 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.4e-41
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQS QM+ENLHKQFLDEKISDRQRP+FSME+AETKK KSA HKIAQ+T ESN  TQ
Sbjct: 256 MGLEPQSSQMYENLHKQFLDEKISDRQRPEFSMEVAETKKPKSAIHKIAQKTSESN--TQ 315

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGILKH A EVN Y NYSSY  SREE TH A PIVLLKPVRVSQVE E+RQAQVFE+
Sbjct: 316 QSKGILKHPANEVNDYFNYSSYSHSREESTHAAQPIVLLKPVRVSQVEWEERQAQVFEE 372

[Close]

BLAST of Clc00G01390 vs. ExPASy TrEMBL
Match: A0A1S3C7S3 (uncharacterized protein LOC103497820 OS=Cucumis melo OX=3656 GN=LOC103497820 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.4e-41
Identity = 97/119 (81.51%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           MGLEPQS QM+ENLHKQFLDEKISDRQRP+FSME+AETKK KSA HKIAQ+T ESN  TQ
Sbjct: 256 MGLEPQSSQMYENLHKQFLDEKISDRQRPEFSMEVAETKKPKSAIHKIAQKTSESN--TQ 315

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           QSKGILKH A EVN Y NYSSY  SREE TH A PIVLLKPVRVSQVE E+RQAQVFE+
Sbjct: 316 QSKGILKHPANEVNDYFNYSSYSHSREESTHAAQPIVLLKPVRVSQVEWEERQAQVFEE 372

[Close]

BLAST of Clc00G01390 vs. ExPASy TrEMBL
Match: A0A6J1FDK4 (uncharacterized protein LOC111444401 OS=Cucurbita moschata OX=3662 GN=LOC111444401 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.9e-34
Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 3   LEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQQS 62
           LE Q KQMHE L +    EKI D QR KFS EM ETKK K+ THKI +RT ESNLDT Q 
Sbjct: 259 LELQPKQMHETLGRHLPSEKILDLQRSKFSNEMVETKKSKAVTHKIGKRTTESNLDTHQF 318

Query: 63  KGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           KGILKHSAKEV+ Y NYSSYR SREELTHTAPPIVLLKP+RVSQ E E+RQA+VFE+
Sbjct: 319 KGILKHSAKEVDDYFNYSSYRHSREELTHTAPPIVLLKPLRVSQAEWEERQARVFEE 375

[Close]

BLAST of Clc00G01390 vs. ExPASy TrEMBL
Match: A0A6J1HRF8 (uncharacterized protein LOC111465449 OS=Cucurbita maxima OX=3661 GN=LOC111465449 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 83/119 (69.75%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MGLEPQSKQMHENLHKQFLDEKISDRQRPKFSMEMAETKKLKSATHKIAQRTLESNLDTQ 60
           M LE Q KQMHE L +    EKI D QR KFS EM ETKK K+  HKI +RT E NLDT 
Sbjct: 257 MDLELQPKQMHETLGRHLPREKILDLQRSKFSNEMVETKKSKAVRHKIGKRTTELNLDTH 316

Query: 61  QSKGILKHSAKEVNAYSNYSSYRRSREELTHTAPPIVLLKPVRVSQVELEDRQAQVFEK 120
           Q KGILKHSAKEV+ Y NYSSY  SREELTHTAPPIVLLKP+RVSQ E E+RQA+VFE+
Sbjct: 317 QFKGILKHSAKEVDDYFNYSSYSHSREELTHTAPPIVLLKPLRVSQAEWEERQARVFEE 375

The following BLAST results are available for this feature:

BLAST of Clc00G01390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889585.1	1.5e-45	87.39	uncharacterized protein LOC120079462 [Benincasa hispida]	[more]
XP_011648656.1	1.0e-41	80.67	uncharacterized protein LOC105434538 [Cucumis sativus] >KGN60613.1 hypothetical ...	[more]
XP_008458399.1	2.0e-40	81.51	PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo] >KAA0061551.1 bio...	[more]
KAG6599452.1	4.2e-35	73.95	hypothetical protein SDJN03_09230, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030430.1	4.2e-35	73.95	hypothetical protein SDJN02_08777, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc00G01390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc00G01390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFV4	5.0e-42	80.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004140 PE=4 SV=1	[more]
A0A5D3CG00	9.4e-41	81.51	Biorientation of chromosomes in cell division protein 1-like 1 OS=Cucumis melo v...	[more]
A0A1S3C7S3	9.4e-41	81.51	uncharacterized protein LOC103497820 OS=Cucumis melo OX=3656 GN=LOC103497820 PE=...	[more]
A0A6J1FDK4	2.9e-34	72.65	uncharacterized protein LOC111444401 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A6J1HRF8	1.6e-32	69.75	uncharacterized protein LOC111465449 OS=Cucurbita maxima OX=3661 GN=LOC111465449...	[more]

BLAST of Clc00G01390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..28
None	No IPR available	PANTHER	PTHR34282:SF2	OS01G0228800 PROTEIN	coord: 1..119
None	No IPR available	PANTHER	PTHR34282	OS01G0228800 PROTEIN-RELATED	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc00G01390.1	Clc00G01390.1	mRNA