Cla97C11G220260 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G220260
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	pre-rRNA-processing protein TSR2
Location	Cla97Chr11: 26299309 .. 26309453 (-)
RNA-Seq Expression	Cla97C11G220260
Synteny	Cla97C11G220260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATTTTCACAAATCCAAATCCGATTACGACCACCGCCGCAACCACTGCTGCAAACGGCATCCGAACCACCGCCAATCTCCTGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCGAATCCTCTCCGCCGCTACAACGACGACTTCTTCGCGTAAAACCTCCGATTCTCTTTCTTCTTCTAGTTCCTCTTCTTATTACTCCTCTGCTTCCTCTTCTTCTTCCTGTTCTTCGCCGAATCTTTACAATTACAATACGGATCGTCGTAGGGCGGGTTTTGTGTTCTTTAAGAAGAGTAAATCGATGGCGGCGATTGCGCCGAGATTGAGAGGAAGAACAGAGAGTGAGAGTGGAAAGAAGAGTAAGTTAGGGTTTTGGTCGAGGTTTTTGAATCGGCCGAGAAGGAAGAGGATGGAATTTCAGGAAGTTTTGATGCACTCGAGAACTGTCGTACAGAGGGACGTGCATGGATGAACAGAATCGGCTCGATTCGGTTGACTTCAAGATACGCCAAAAATTGTGATTTCTTCATTCATTTTTTATTTTTTCCCTTTTTCTTTGAAAAGGATTCATTTTGATCGTCAGGGTTTGAGAAGATTTTGTTTCTGTAAATATGTAATTAAACCATACGGAATTAGGGAAGAAAGCGCCTTCGATTCGATGATTTCTTTATGATTGTTTTTGGAATTTTGATTTTCTGTATGAATTCAAATATTTTGTAAATAAGCACAAATTAAAAAAAAAAATGAAGTTATTTATGTGAACTTAATAGTTGCACGGTTATTTTCAAATATAATAAAAAGACTCAAATTATTTACAACAATATTAAAATTTGAATCCAACCTAAAATAGATTAAATAATATAATTAAAATAATGTGAAATGATAAAAAGTCTTGTTTGTCATGGAAAAAAACCTCCCAAGCCGCAATTGCATCATAGATAGAGAGGGATAGAATTTAATATCTATCACGCAATAGGTAGTGATGTAATTTTATCTAGGGAGTGGATATCTAAACTATAATTCTATCAAGTGATGTTATGTTCCTTTTGAGTTGAGTCACATATTTTAGCTAATGAGATATCTAGAGAGTGGATATCTATTTAGATTTTTTTTTAAATAATTTTTATCCCGATAGATAGTAATAGAAGTTTATCATTGTCTATTGCAAACACACAATGATAGAATTTATGTCTACCTCAACATTGTCTATCTGAATAGAAAACAATAGCAATAAATAACACAACATGTTGGAGTTTTTAGGTGCTAGTTTGATAAATAGAGATAAACATTTATTAGTGTCTATCAATAATAGATACAAACTTCTATTTGTGTCTATCTGCGATAGACACAAGTAGAATTTCTATTAGATAGACTCTTGTAACTTTGTTGTTGATACATAATCAATAATATACTAGCATATAACACAATTATATTATTGTTTGTAGCTTTAAGATAGATTGAGAGTTTGTAAGGTTGTTTGAAGGTTATTTGGTTAAAGAAGTTGTTTGATTTGTGTTTATATATCGTGATAGACACTAATAGACTATCAGTAATAGAAACAGAGAATATATGGATAGACTCTATAGCGATACATAGAGATAGACTATAATAGACACATATAGACTTCTATCAGCGTCCATCGCAAATAGAAACAAATAGAGTCTATAAACTTTGTTATTGATTTAAAGATATTGTTCTATTTGTTTACAACTCAATAAGATAATAAATAAATAAATAAATAATTGATAACCAACAAACAAAATTTCGTCACAAGTAAATAAAAGCAAGATACAAGATTACAACATCATTGTTTAATTGGCTCAAGTTTGCAATTCTTACAATTGTGACCTTTCATATTACATCAGCTACATCTTGATGAACTTTTGGATTCACATATAGACATTTAACGATAAGAGGTAGTGTTTTACTCTGGTCATCTACAGTTCTCCAATCTGAATGAATTTCAACAGGTTGAACATAACCTTTATAGGTTGATGACAATGTTGTAGGATAATAATACACATACACATAAGAATAAGTATTGAGGAAGAACATCAAGTCCATGATCACCAAAACTCCACCAACCTTATAATTCTCATAACAATTGTAATGGTTTCACTATCCACCATAAAAACACAACCATAGGAAGATTAACCATGATATCAAATTACTGCAAAAGGGAAAGAGACTGTATAAGGAACTAATAGTAAAAATATTTATCACAAATAGAAAGAGATAGAGACAGTGATAGATAGAGATAGTAGTTTATATATGTCTATTGCTAATAGACAGTGATAGTGATATACATAGATAGAATTCTATCTCTGTCTACACTCATGGACATAGATAAATTATTAAGAAGATTGTAAACAAGTGTAATAAATAGGAAGAAGAACGAGTACATTATACAAATACAAAAACATACCAAAATTCTATCACTGCAAATCATTTTGCAATTTAATTAGCAACTCTTATTTACTTTATTTCAAAATCAACAAATGAACAGCAACTTCGATATTTACTTTGTTTTATAATCAACAGAGAGAGAGAATAGAACTTTTCTATAGAGTATGCTATATTATCAAATTCTTAATGATAGATAAAAATAGTTTTCCATCACTGTCTATTAGTGGTAAATAGTGATAGAACTCTATAAGAGTTTATTCGATTTTAATTCCTATCAAATAAATTTAAGTGAGTCTAATATCAAACCAACTAAACTATTGAAGTCTATCATATAATCCACAAAAACTCCAACAACCTGAAAATTCTCATAACAATTGTAATGGTTCCATTATCCACCATAAAAAAAACAACTAGAGGAAGATTAACCATAATATCAAATTATTACAAAAGGCAAAGAGGATTGCATAAGTAACAATAACGAAAATATCTATTACAGATAGATAGAGATAGAATTCTATCTATGTCTATCACCGATAGATAGAGATAAAGTTTTCATGAAGAAAATTTTAAACAAATTTAATCAATCAAAGAAGAAGAAGAACAAGCACATTATACAAACACAAACCAGTACAAACAAATCTAAAACAGGAAAAAATAAACTAATTGAAAAAAGAAAAGAACTAGCACATTACACAAATACAAATATAAACCTATACAATCAAAGTACTAGACTGTGATAGATATCTATCATTGTCTACCGCGATAGACAGTGATAGAACTCTATTGCAGTCTATCTAATTTGAATTCCAATTAGCCATATTCCGATATAGTTTAATTCAAATCACTTGAATTCCGAAGAAGAAGAAGGAGAATAATTCCAAAGAAGAAGAAGAAGTTTTGAAGAATTTCGAAGAAGAATATTAGAGTCTCAAAGAGTAGAGTAGCCTAGTCCATCAAATAGACATGGATAAAACTCTATCACTGTTTAACTGATAAACAAAGATAGAAGTCTATCACTGTTTATTAGAAAGCAATGAAAAGAACATACACAACAAGCAAATTCTATCAATATTAATCATTGTAATAGACAGAGATAGAGTTCTATCACTATCTATTAGTTCTATTACTATCTATTAGCGATAGACAATGATAGAACTCTGTCAAGGTTTATTTGAATTGAATTTCAATTAGCCATATTTCGATGGAGTTGAATTTGAGCTAAAATTAAATTTTAATTAGTTATATTTTAATCGATGACAGAATAAGAAGAGAAATATCAACTTAATAAGAAGAAGATCACTCAATAACAAATGATTGAAGAATTTTCCATGGTTTTATATTAATATTTTAATTTTCCAAGAAATTATATTCGTGCTAAAACTTTCGTTTCCTTTTTTTTCAAATCTAATTTCCAAAAGATCTACTTAGATTTGGGAGGTTATTATTATTATTATTTTCAAATATCTAGGACGGTTCACTAGTTGGCTCGTTGTCTCGTTTCATGGACTTCTAATTTTTTACGTGATTATGATGTATGTAACTTTTACCACATAATATTTATATTTGTATTTTTTTAAAGAAGACTTGACTAAGAATTCAATATTACTTACACAAATTAAGTACATTGAGTTTTCCTTCTCTCTTTTTCTATTATCTTTTTTTATATAATATATGAGAAGAGAGAATTAAATTTCTAACCTTGTTTTATGTCAATTAAATTTTTCTTTTTTATAATATATGGGTAATAATATATAAGTTTCTGAACCTATATTCATGTTGACATTTTTTTTTTTTTATTTCTGAATCTTCATTGATATTTTTTAAATATTTTATATTTTATATTAATAAAGTGGTCATATTTATTTACGTGCAGAGTATATATATATGATATGGTTGCAATTTTTTAATTAAATTGTAAGATTGTTTCTTTCCTTTTCAAATCTAAAACACATTCATTTTCTGAATACAATATCTAACTTATATAGTTTAAATTCAATAAAAACAAAAGTTGGCTTTAATTATTGGAGTTTTTTTTTTTATTTGACACGCATTATCAATATTTATTAAAAATAATATTTAACTGTATTATGTGTTACACATCTACTTTTGTGCAATTCATTCTAACGGCAATAAAAAAATAAATAATAAATAAAAAAACTTTTAAAAATGAAAAAAAGAAAGAATTTTTTACGCGACAAATTGTAGTTAGACAATTAAGTGAGCTGCATAAAGATAGATACAATCTAAAATGCATCTTAATATTTTTTATATATTTATGTATGATTAAAAATAGATATTAATTAATATAGACATAACCACGTTTTCAAAATAACAATCCTTTTATTGAAAATTTATATGAAATTTGTAATAATGCCGTACATATAAGTTTAACAATGTCTCTTTAATGGTAAATTCAATAAAGTCTTTAACCTATCAATTATTATTCATCTTTGTAATTTCTTTGGCAACTTGTAAAACGGTGGAATTGAAATTTGACTTCGAAGTTGATAATATAAATTTATGTTAGTTGAGCTATGCTCATTTTTGTATTATTTTATACTTCAAATACATGATGTTTTGAATGGTTCCTACTTTTGCTTTTATATATATTATTTATTGGTAATTTTATTGTTTATAAAAAGGTATTATCTCGTCGTTGCACTAATCAAGTGGAAGTTCTTTCTAGGATTTTCTAAAGAAGAATTTTATTATAATTATCGTATATCGTTATGTACATATAAGATCAACACTCAAGAAAATTTCTCAGCATAGCACACTGAGAGCCTATATACGAAATTACTCTTTTGATATCTCAAAAAATTATCGATCACTCAATTAATTAAGTTTTAAAAAATTTAAATATTTAAAAATCATTTTGATATATATATATTACATCATTTCGGTTGATGTGGTTTCAACGTTATGTTCATTTGATTTCAATTCTTCAATTTTAGTTTTTATTATTTAACCAATCTTGAATTTAGTTAGTTAAAGTTAATTTTGATTGAAATTTAGGTAAATATTAGTAATAATTTTCATGCAAGAAAAGACATTATATAAATATATTTTCACAAATTTTAAAGGAAATGCTAATAGATCTACATTAAGAATTAATCACAATAAACTAACTACGGAGGCTAAATTTAAGATGTATTGACTAAAATTTAAATCATTAACTTTTGCAAGTGTATCATTTACACCCTCAATTATATTTTATTTAGATAAATATTGTGTGAGACTTATAATTTTATCAATTAAATGCCTAAATTTTCATAAACGAATAGATTTATACTCTCTATTAAGATTTTTTGTTTAATAAAAATTGTTCATGTATCAATTTTGATAATCCATTTTATATCAAACATTTGAAAAAGCTTACACACGTGTAAAAATTGAATGTGTGAACGATTTTTAAATGTAATATTAACAAAAGATCTAAATCAATTCACTTTAACAATTTAGTAGTTTAAATTGAAATAATTATATGTTTCATTTGATATATTTTAAATTAAATTTGAAAGATAGTGTTAATTGATACACATGCAAAAATTGAAGATTAAAATTGATATAATAATTATTTAATTGTTTAAAAAGACCCAAAGTGTAAATTAAAATGTTTTTTTATTTATTAAAAAAAAAATTAAATATTTAATGAGAAATTATCTTAAATGACAAAACTGCTTAAAATATTTAAAATTAATACCAAAATACACATTTTATAAATATTTTAGTTATTTTTGTTATATTTGAAAATAACTTTATTAAGTAGGTCAAAATAAAATAAAATAAAGAGACTAAAATAATCTTTTAACCTAAAAGATTCGAGAGATTGATCTTAGATTTAACCCGAATGTTTTAAACTCATAAGGTATTAATTATCAACGACATTAATAGTTGTAAGTTTAAAATCGATTACAATTAAATTTCATTTTTCTCTCGTAAGTAATCTGCTTAGGGCTGGCCTCATCCTCTCTCTCGATTTCACTCACCGTTCTCAGCTGCTTCAAGGTGTGTTCTTCGTAATATGTTTGTTTTAGGTTTTGCTTTGCTGATTGAATATTTGTTCTAGATTTGATCTCTCTGTCTCACTCGCGGTTTGAAGCGAGTAATTCTGCGACGAACCTCTCTGAACTCGTTGTTTGGGACACGATTTTTCTTTTGAAATTCCTCACTTGGTTGGCAATTTTATTTTAGTTAAAATTAATAAAAGGGGAAGAAGTATGTGGTTTGTTTGTTTCCTTGTTGCGTGCTTACATAGTGATAAGATATACATACATGATACGAGAAGATTACGCTCTTAACTTACCTGTGATTTGATAATTTAATTGGGGTTTTAGGGTTTTACGCTAGGAGGCGAAGAGATGGAAGGTGGGGGAAACCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCTGCCCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTTTCACATGGTTTACTCAGAGCAAAGGTACTTTTACTCACTTTCACTTGGATAATCTTAGTAGTTGGTGCCTATCTTCGTGCATTGTTCCTCTTTCTGTAGATTGATCAGTTTCTCAGGTCCAGTAGTGTTTTATTTTGCAGGCAATTAAATATTTCTTTTTTGTAACCATTTGAAGAAGCAGTTTGTGTAAACATAGAAAAGGGAATTCATTAAATGGCTAGATAAGTGTTTAAAAAAGTTCACTGAGGCGTATGCTGAGGCATGGCCCCTATGCCTCGCTTCAAAGAAGCAAGGCTCCCTTAATGAAGCGTGCCTGAGATGCTGCTCCTCAGGCCTAACTTTCTATTGTTTTTTCTTTTCTTTTTTTTTTTTTTTTTCCTCCTTAAAAAGAATTTCTAACTCTTAAGAAAGAAACTGATTTATCTTCTTAAAAATCACATTTTTTTTTTCTGAAATAACAGCTTTACTTATTTTAACTTTTCATAATTTTATTATTTACAATACTATTGTTCTTCGTATATAAAAAATTTATTTATATTTTTCTGTTGTGTGCCTCATAAAAAGTTCTTTTTTGGCTCCTCACGCTTAAGTCTCAAAGGGCTATGGCTGCTATTGTGCTTTAGTGCACTCAAGCTTTGAAGAAATATAGGTTCTAGCCAATGTTTTAAAAGGCTAAAGACGGCCTTGAGGCTTTTCCTTTTGAAGAGGCGAGGCGTAAGTCTCGAGGCAGTATGGCTTAAGCCTCAAATAGTGAATTAAAAACATCTCACAAATCTTAAATTAGTATGACCCAGTACTGCTAAACACAATAGTCATATAAAAGAGTGAAAGAAAATTCATCCCCACAATTTCACTCAATCAACAATATTATAAGGCATTTAATTTTTCTTTTCCTATTTATATTTGTAGTGTCCGAATCAGCTTATGCGCACTTTAACTAAACTCATGAGATAACCCGCCTAACCCATGGATTGAACCCATGACCTCTTAACCATTTATTGAGACTATGCCTTTTTTTTACCACTAGGCCAATCCATGATGGTTTCTATGAGAATATTTCTATCATCATTACTACTATTATTATCATTAATAGGATTGATTTATACTATAAATCTTGCCGTCAATGTTTCTAAAGTTACAATAGTAAAAGTAGTCCTAATTCAAATGGCCAACAACTCAAACCCATCCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTTGAGGTGTGCGTAAGCTGGCCCAGACACTCATAGATAAAAAAAAAAACTACCTTAACATTTTGTAAGAATTAGGCAAATCACTATTATTTATCTAATCATTAGACTAGGCATAGAGATTTTAAGCCTCAATGTTGTTTTCACAAAGACGTAAGCCTCTTATGGTTCAACAAAGGCGTAAGTCTTAAGGCTAAAACTTAGAGTCTTGCCTTGAAGCGAGCATCAGGCTTAAGCCTCAATAGCTTTTTGAAACATTCTTCCTGCTTGTACTTGGTCAATTAATGCTTGAATATTTTTCCTTGAAGAAATTCAGATACTCTGAATTGCTTTGAACTTTCTAAATGATAGTTATTTTGTAGTGGAACTTGATACTTTGTAAGCGTGACATTTATAGAATTTGGTTATCTAGATCTAACAGAGTTATTGTTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTATATTTTATTATTCCCCTCTCAATCCTTTTTAGACTTCAAGGAATGCCTTTTTTCTCATAACCGAGGTCTCTCTCGTTCTCTCTCTTTTTTTTTTTTTTCCTTTTCCTTCCGCATGATGAAATAACATGCTGTGACATAGGACTAAGTTAATGCAAATATTTGCGTGAACTGTTATGACTAACTACGGCTGATGGGTAGTTTTTTCTACCCAAATTGACTCTGGATGGTTCTCGATGTGACTTGTGAAAATGGAGTTCAGTCAGAGATATTATTAAAAATTTGCTTCCAACTCTTAGTCTTATTTTATGATGCTTTTGGTTGTAATAGTCTGAGATACCATCCAGATTTTAGCTATTTATTGTTATGGCTGGGACTTTAGAAGATATTGCTTGGAAGACAGTGGTGATTGTATAAATACCTTTCTAGTTGAACGGAACCTTATGTAGTTTATTAATTTTCAAACCTAACAACTTTTTACGTCTAAGTTAAAAGTGAACTTTTCTTTGTAGTCATTTTCAAATTTCTGTAGGAGGTAACTGGCATGCTTAAAAGTTCATAATTTCGAATAGATTTGTCCAGTCACATTATTAGAATGTTTGGTTGAAGTAGAAGAATAAGATACCGAATAGCAACAAATGGAGAAAATGAGGATGGGGGTAAACGTTGGGTGAGATCAATGATGTATCAGCTTGTATTAAAAATCCCCTCTGAAAAGAGAAATGTGTTACTATCTTGTAGCTCCTTGAAGAATTGAGTAATAATCCTTATTAATGGATCTTTGATGCTTGTGTTTCTTCTCTAATAATGCAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTTTGGATCGTAACTTTAGCTCGATCGAAAGGTTAAGGCAAACCCCTCATCCTCAAGTTGCTCATTCTCACGTTAGTCAGGTACCATGAATTTTTGTCCTAAACAGCCTGCTCTTTCATAGGTCCACTTCAAAGTTAAAGTATATGTTGAAAAGGAACTGGTATCCGATAGTATAATTTTTAGAATACAGAATAGCATTGCTGTTTGCTATTCATTGGTCTACATTACCATAACTTGCTGAAGGGATTAGAACTGGCCACGTTTGCAGTTCTCTGCATCAGCTTATCATGGGTCGTTAATTGCATCTTTCAGAAAATGTCATTCATACTACAAAACAAACACTTGCTTGTTATATATAATATCTTCTAATCTTGACATGGATGAATTTTAAGGCTGTGAGTGATGATGATGAAGATGATGAAGAAGATGGCAGTGGTGATGTTGGAAATGGAAGAGATGTCATGAGAAATGATATGATGGTGGATGCCGAACAACCCAGGTCTGTCAATCAGCTCAATCTAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAA

mRNA sequence

ATGGCGAATTTTCACAAATCCAAATCCGATTACGACCACCGCCGCAACCACTGCTGCAAACGGCATCCGAACCACCGCCAATCTCCTGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCGAATCCTCTCCGCCGCTACAACGACGACTTCTTCGCGTAAAACCTCCGATTCTCTTTCTTCTTCTAGTTCCTCTTCTTATTACTCCTCTGCTTCCTCTTCTTCTTCCTGTTCTTCGCCGAATCTTTACAATTACAATACGGATCGTCGTAGGGCGGGTTTTGTGTTCTTTAAGAAGAGTAAATCGATGGCGGCGATTGCGCCGAGATTGAGAGGAAGAACAGAGAGTGAGAGTGGAAAGAAGAGGCTGGCCTCATCCTCTCTCTCGATTTCACTCACCGTTCTCAGCTGCTTCAAGGGTTTTACGCTAGGAGGCGAAGAGATGGAAGGTGGGGGAAACCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCTGCCCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTTTCACATGGTTTACTCAGAGCAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTTTGGATCGTAACTTTAGCTCGATCGAAAGGTTAAGGCAAACCCCTCATCCTCAAGTTGCTCATTCTCACGTTAGTCAGGCTGTGAGTGATGATGATGAAGATGATGAAGAAGATGGCAGTGGTGATGTTGGAAATGGAAGAGATGTCATGAGAAATGATATGATGGTGGATGCCGAACAACCCAGGTCTGTCAATCAGCTCAATCTAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAA

Coding sequence (CDS)

ATGGCGAATTTTCACAAATCCAAATCCGATTACGACCACCGCCGCAACCACTGCTGCAAACGGCATCCGAACCACCGCCAATCTCCTGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCGAATCCTCTCCGCCGCTACAACGACGACTTCTTCGCGTAAAACCTCCGATTCTCTTTCTTCTTCTAGTTCCTCTTCTTATTACTCCTCTGCTTCCTCTTCTTCTTCCTGTTCTTCGCCGAATCTTTACAATTACAATACGGATCGTCGTAGGGCGGGTTTTGTGTTCTTTAAGAAGAGTAAATCGATGGCGGCGATTGCGCCGAGATTGAGAGGAAGAACAGAGAGTGAGAGTGGAAAGAAGAGGCTGGCCTCATCCTCTCTCTCGATTTCACTCACCGTTCTCAGCTGCTTCAAGGGTTTTACGCTAGGAGGCGAAGAGATGGAAGGTGGGGGAAACCGCCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCTGCCCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTTTCACATGGTTTACTCAGAGCAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTTTGGATCGTAACTTTAGCTCGATCGAAAGGTTAAGGCAAACCCCTCATCCTCAAGTTGCTCATTCTCACGTTAGTCAGGCTGTGAGTGATGATGATGAAGATGATGAAGAAGATGGCAGTGGTGATGTTGGAAATGGAAGAGATGTCATGAGAAATGATATGATGGTGGATGCCGAACAACCCAGGTCTGTCAATCAGCTCAATCTAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAA

Protein sequence

MANFHKSKSDYDHRRNHCCKRHPNHRQSPGVCSLCLTEKLSRILSAATTTTSSRKTSDSLSSSSSSSYYSSASSSSSCSSPNLYNYNTDRRRAGFVFFKKSKSMAAIAPRLRGRTESESGKKRLASSSLSISLTVLSCFKGFTLGGEEMEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTPHPQVAHSHVSQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGWVQVTSRRSRGTRN

Homology

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BLAST of Cla97C11G220260 vs. NCBI nr
Match: KAG6591676.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418.3 bits (1074), Expect = 6.4e-113
Identity = 256/360 (71.11%), Postives = 279/360 (77.50%), Query Frame = 0


Query: 1   MANFHKSKSDYDHRRNHCCKRHPNHRQSPGVCSLCLTEKLSRILSAATTTTSSRKTSDSL 60
           MANFH+SKSDYD RR   CKRHP H QSPGVCSLCL EKLS+I+S    T SSRK SDSL
Sbjct: 1   MANFHRSKSDYDDRRR--CKRHPKHHQSPGVCSLCLAEKLSQIVS----TKSSRKVSDSL 60

Query: 61  SSSSSSSYYSSASSSSSCSSPN-LYNYNTDRRRAGFVF-----FKKSKSMAAIAPRLRGR 120
           SSS S+SYYSSASS SSCSSPN  Y YNTDRR+A FVF     FKKS+SM A APRLR  
Sbjct: 61  SSSCSTSYYSSASSCSSCSSPNPPYGYNTDRRKA-FVFSASSIFKKSRSM-AFAPRLRRG 120

Query: 121 TESESGK-KRLASSSL----SISLTVLSCFKGFTLGGEEMEGGGNRLLPADAFPLFQEGI 180
           TES+SGK   L S S+         + +  +   L  E  +   NRLLPA A PLFQEGI
Sbjct: 121 TESDSGKNNNLGSLSIDHRPQFHSALSAVSRVLRLEAERWKVAKNRLLPAGALPLFQEGI 180

Query: 181 GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDLEMILDEAMLS 240
           GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFTQ+KEPLYIDDLEMILDEA+LS
Sbjct: 181 GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMILDEALLS 240

Query: 241 LNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTPHPQVAHSHVSQAVSDDDEDDE 300
           LNTQVDDGSIEEVAERLIVMHEECLD NFSSIE+LRQ+P P+VA SHVSQ +SDDDE+++
Sbjct: 241 LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRVARSHVSQVMSDDDEEED 300

Query: 301 EDGSGDVGNGRDVM----RNDMMVDAEQPRSVNQLNLEATAEAEDGWVQVTSRRSRGTRN 346
           E+   D   G DV+    R DMMVDA Q   VNQ   EATAEAEDGWVQVTSRRSRGTRN
Sbjct: 301 EE---DEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDGWVQVTSRRSRGTRN 349

[Close]

BLAST of Cla97C11G220260 vs. NCBI nr
Match: KAG6608259.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 4.3e-85
Identity = 180/239 (75.31%), Postives = 200/239 (83.68%), Query Frame = 0


Query: 117 SESGKKRLAS-SSLSISLTVLSCFKGFTLGGEEMEGGGNRLLPADAFPLFQEGIGLVLSR 176
           SES +  L    S SIS T ++  +GFTL G EM+GGGNRLLPADAFPLFQEGIGLVLSR
Sbjct: 14  SESNRSSLFDRPSPSISFTAINFIEGFTLVGGEMDGGGNRLLPADAFPLFQEGIGLVLSR 73

Query: 177 WSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDLEMILDEAMLSLNTQVD 236
           WSALQLAV+NEWGGRDSRRKVELLCSDIFTWFTQ+KE LYIDDLEMILDE MLSLNTQVD
Sbjct: 74  WSALQLAVDNEWGGRDSRRKVELLCSDIFTWFTQNKETLYIDDLEMILDETMLSLNTQVD 133

Query: 237 DGSIEEVAERLIVMHEECLDRNFSSIERLRQTPHPQ-VAHSHVSQAVSDDDEDDEEDGSG 296
           DGSIEEVAE+LI MHEEC+D NFSSIERLRQ+P P+  AHSHVSQA+SDD+E++E+D   
Sbjct: 134 DGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGGAHSHVSQAMSDDEEEEEDDDDD 193

Query: 297 DVGNGRDVMRNDMMVDA------EQPRSVNQ-LNLEATAEAEDGWVQVTSRR-SRGTRN 346
           D GNG D MRNDMMVDA      +QPR+VNQ    EA++ AEDGWVQVTSRR SRGTRN
Sbjct: 194 DGGNGSDGMRNDMMVDAIQQQQQQQPRAVNQPRRPEASSPAEDGWVQVTSRRSSRGTRN 252

[Close]

BLAST of Cla97C11G220260 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 5.3e-83
Identity = 168/199 (84.42%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERLIVMHEECLD NFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSGD--VGNGRDVMRNDMMVDAEQPRSVNQLNLEATA 328
            PQVA SHVSQ +SDDDE+++E+  GD  VGNG    R DMMVDA QPR VNQ   EATA
Sbjct: 121 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNG----RRDMMVDATQPRPVNQPTPEATA 180

Query: 329 EAEDGWVQVTSRRSRGTRN 346
           EAEDGWVQVTSRRSRGTRN
Sbjct: 181 EAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of Cla97C11G220260 vs. NCBI nr
Match: XP_016903483.1 (PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-82
Identity = 168/201 (83.58%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERLI MHEEC+DRNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQP---RSVN-QLNLEA 328
            PQVAH+HV+QA SDDD+DD+ +         DV RNDMMVDA QP   R VN QLN EA
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVE--------EDVNRNDMMVDAVQPAQSRPVNHQLNPEA 180

Query: 329 TAEAEDGWVQVTSRRSRGTRN 346
           TAEAEDGWVQVTSRR+RGTRN
Sbjct: 181 TAEAEDGWVQVTSRRNRGTRN 193

[Close]

BLAST of Cla97C11G220260 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 5.8e-82
Identity = 167/198 (84.34%), Postives = 176/198 (88.89%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGG NRLLPA A P FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERLIVMHEECLD NFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSG-DVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAE 328
            P+VA SHVSQ +SDD+E+DEE+G   DVGNG    R DMMVDA QPR VNQ   EATAE
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG----RRDMMVDAIQPRPVNQPTPEATAE 180

Query: 329 AEDGWVQVTSRRSRGTRN 346
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 194

[Close]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09
Identity = 52/182 (28.57%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 164 LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDLEMIL 223
           +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT + + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 224 DEAMLS-LNTQVDDGSIEEVAERLIVMHEECLDRNFSSI-ERLRQTPHPQV----AHSHV 283
            E M +  +T VDDGS+ +VA+++  M ++C     + + E++ +    +     A +  
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 130

Query: 284 SQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGWVQVTS 340
           +Q   DDD+DDEE+     G             +    +VN L+ E   E +DGW  V  
Sbjct: 131 AQTPQDDDDDDEEEAMDCEGGSAGA--------SVSSTAVNDLHHE--EEEDDGWTVVRR 181

[Close]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-08
Identity = 39/129 (30.23%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 165 FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDLEMILD 224
           F+ G+ +V+ +W AL +AVEN WGG DS  K + +   +   F   K        E +L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIEETLLY 91

Query: 225 EAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLR---QTPHPQVAHSHVSQAV 284
             +    T V+D S   +A  +I ++ +C + N++ +E+L    Q          V    
Sbjct: 92  AMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHIE 151

Query: 285 SDDDEDDEE 291
            DDDEDDE+
Sbjct: 152 GDDDEDDED 160

[Close]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06
Identity = 47/185 (25.41%), Postives = 87/185 (47.03%), Query Frame = 0


Query: 160 DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDL 219
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F ++ + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 220 EMILDEAMLS-LNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQ--TPHPQVAHSH 279
           E  L E M++  +T V+DGS+ +V+++L  M       + ++++ +    T       + 
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 280 VSQAVSDDDEDDEEDG--SGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGWVQ 339
                 + DEDD+ +     +V    D    D +    +P   +   ++     EDGW  
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDIVEDGWTI 186

[Close]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06
Identity = 49/186 (26.34%), Postives = 90/186 (48.39%), Query Frame = 0


Query: 160 DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDL 219
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F ++ + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 220 EMILDEAMLS-LNTQVDDGSIEEVAERLIVMHEECLDRNFSSIER----LRQTPHPQVAH 279
           E  L E + +  +T V+DGS+ +V+++L  M       + +++      + Q      A 
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 280 SHVSQAVSDDDEDDEED-GSGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGWV 339
           +  +   +D+DEDD +     +V    D    D +    +P   +   ++     EDGW 
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVEDGWT 186

[Close]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-05
Identity = 48/185 (25.95%), Postives = 85/185 (45.95%), Query Frame = 0


Query: 160 DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYIDDL 219
           D+  LF+E    VL  W  LQ+AVEN +GG  S+ K E +   I  +F+ + +    +  
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 220 EMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIE-RLRQTPHPQV-AHSHV 279
           + I+       +T V+DGS   VA++L V+  +C     ++++ ++ Q    +    + V
Sbjct: 67  DSIMGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKV 126

Query: 280 SQAVSDDDED---DEEDGSGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGWVQ 339
            +    DDE+   D+E+ + D  N         +  A  P S  +   E     +DGW  
Sbjct: 127 QEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEE---PEDDGWTV 186

[Close]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 168/201 (83.58%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERLI MHEEC+DRNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQP---RSVN-QLNLEA 328
            PQVAH+HV+QA SDDD+DD+ +         DV RNDMMVDA QP   R VN QLN EA
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVE--------EDVNRNDMMVDAVQPAQSRPVNHQLNPEA 180

Query: 329 TAEAEDGWVQVTSRRSRGTRN 346
           TAEAEDGWVQVTSRR+RGTRN
Sbjct: 181 TAEAEDGWVQVTSRRNRGTRN 193

[Close]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL
Match: A0A1S4E5H6 (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 168/201 (83.58%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERLI MHEEC+DRNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQP---RSVN-QLNLEA 328
            PQVAH+HV+QA SDDD+DD+ +         DV RNDMMVDA QP   R VN QLN EA
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVE--------EDVNRNDMMVDAVQPAQSRPVNHQLNPEA 180

Query: 329 TAEAEDGWVQVTSRRSRGTRN 346
           TAEAEDGWVQVTSRR+RGTRN
Sbjct: 181 TAEAEDGWVQVTSRRNRGTRN 193

[Close]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 167/198 (84.34%), Postives = 176/198 (88.89%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGG NRLLPA A P FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERLIVMHEECLD NFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSG-DVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAE 328
            P+VA SHVSQ +SDD+E+DEE+G   DVGNG    R DMMVDA QPR VNQ   EATAE
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG----RRDMMVDAIQPRPVNQPTPEATAE 180

Query: 329 AEDGWVQVTSRRSRGTRN 346
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 194

[Close]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 6.3e-82
Identity = 166/199 (83.42%), Postives = 176/199 (88.44%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERLIVMHEECLD NFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEEDGSGD--VGNGRDVMRNDMMVDAEQPRSVNQLNLEATA 328
            P+VA SHVSQ +SDDDE+++E+  GD  VGNG    R DMMVDA QP  VNQ   EATA
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNG----RRDMMVDAIQPTPVNQPTPEATA 180

Query: 329 EAEDGWVQVTSRRSRGTRN 346
           EAEDGWVQVTSRRSRGTRN
Sbjct: 181 EAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 168/204 (82.35%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 149 MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 208
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 209 QSKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 268
           Q+KE LYIDDLEMILDE MLSLNTQVDDGSIEEVAE+LI MHEEC+D NFSSI RLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 269 HPQVAHSHVSQAVSDDDEDDEE---DGSGDVGNGRDVMRNDMMVDA--EQPRSVNQL-NL 328
            P+ AHSHVSQA+SD++E++EE   D  GDVGNG D MRNDMMVDA  +QPR+VNQ    
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQQQPRAVNQQPRP 180

Query: 329 EATAEAEDGWVQVTSRR-SRGTRN 346
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of Cla97C11G220260 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 129.4 bits (324), Expect = 5.5e-30
Identity = 77/193 (39.90%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 154 NRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEP 213
           N  L  +A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + +F +F QSK+P
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 214 LY-IDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTPHPQV 273
           +  I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C + N+  +E LR T + Q 
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRAT-YSQT 123

Query: 274 AHSHVSQAVSDDDEDDEEDGSGDVGNGRDVMRNDMMVDAEQPRSVNQLNLEATAEAEDGW 333
           + S V  +  DD+E D+ED         D    DMMVDA   +       E    A+DGW
Sbjct: 124 SASVVKVSNGDDEESDDED---------DDQTTDMMVDASNQKQEAMPVDEPV--ADDGW 183

Query: 334 VQVTSRRSRGTRN 346
             V+SR+++G RN
Sbjct: 184 TVVSSRKNKGKRN 184

[Close]

BLAST of Cla97C11G220260 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-18
Identity = 45/98 (45.92%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 158 PADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQSKEPLYID 217
           P D   + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++F   +QS   + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 218 DLEMILDEA-MLSLNTQVDDGSIEEVAERLIVMHEECL 255
           ++E +L E+ +LS NT+++DGSIEEVAE+L+++HEE L
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHL 120

[Close]

BLAST of Cla97C11G220260 vs. TAIR 10
Match: AT1G72240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 65 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-08
Identity = 47/103 (45.63%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 6   KSKSDYDHRRNHCCKRHPNHRQSPGVCSLCLTEKLSRI--------LSAATTTTSSRKTS 65
           +S S+ +   N  CK+H  HRQSPG+CSLCLTE+LS++          A  T T    TS
Sbjct: 11  RSDSNSNSDNNFSCKKHTKHRQSPGICSLCLTERLSKLSLEYYDYTKKAVETATYCGSTS 70

Query: 66  DSLSSSSSSSYYSSASSSSSCSSPNLYNY---NTDRRRAGFVF 98
            S SSS SS Y  S+SS SSCSSP  Y Y     D ++  F+F
Sbjct: 71  TSSSSSVSSCY--SSSSVSSCSSPLQYRYREKKKDGKKQSFLF 111

[Close]

BLAST of Cla97C11G220260 vs. TAIR 10
Match: AT1G22470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-06
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 3   NFHKSKSDYDHRRNHCCKRHPNHRQSPGVCSLCLTEKLSRI------LSAATTTTSSRKT 62
           N    +SD     N+ CK+HP HRQSPG+CSLCL E LS++       S++ +++S  KT
Sbjct: 25  NLTVKRSDSSSDYNYSCKKHPKHRQSPGICSLCLNESLSKLSSEFYDYSSSMSSSSLAKT 84

Query: 63  SDSLSSSSS-----------SSYYSSASSSSSCSSPNLYNYN 88
             S SS+SS           SSYYSS    SSC SP  + Y+
Sbjct: 85  MSSCSSASSESESDFSSTAISSYYSSV---SSCLSPLQHRYS 123

[Close]

BLAST of Cla97C11G220260 vs. TAIR 10
Match: AT1G35210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 4.3e-06
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 5   HKSKSDYDHRRNHCCKRHPNHRQSPGVCSLCLTEKLSRILSAATTTTSSRKTSDSLSSSS 64
           +K+K++   +    CK+HP HRQSPGVCSLCL E+LS  + AA++     +   S SSS+
Sbjct: 17  NKNKAEDKTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAASSRRPRSRQILSTSSST 76

Query: 65  SSSYYSSASSS-SSCSSPNLYNYNTDRRR 93
           +SS  S  SSS SSC SP +     DRRR
Sbjct: 77  TSSLSSDGSSSVSSCPSPIV-----DRRR 100

The following BLAST results are available for this feature:

BLAST of Cla97C11G220260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591676.1	6.4e-113	71.11	Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s...	[more]
KAG6608259.1	4.3e-85	75.31	Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s...	[more]
XP_023534881.1	5.3e-83	84.42	pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
XP_016903483.1	1.5e-82	83.58	PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-...	[more]
XP_022975934.1	5.8e-82	84.34	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]

BLAST of Cla97C11G220260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KRG3	1.8e-09	28.57	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q06672	1.2e-08	30.23	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
Q3T090	1.4e-06	25.41	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q969E8	1.4e-06	26.34	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
Q3KPN2	1.2e-05	25.95	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ...	[more]

BLAST of Cla97C11G220260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E598	7.4e-83	83.58	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E5H6	7.4e-83	83.58	pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV...	[more]
A0A6J1IM14	2.8e-82	84.34	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1F8A7	6.3e-82	83.42	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J400	1.1e-81	82.35	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Cla97C11G220260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	5.5e-30	39.90	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	2.8e-18	45.92	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT1G72240.1	4.5e-08	45.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G22470.1	1.5e-06	42.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G35210.1	4.3e-06	47.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 165..244 e-value: 2.6E-22 score: 79.1
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 160..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..345
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 160..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G220260.2	Cla97C11G220260.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus