Cla97C11G219720 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G219720
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	nuclear pore complex protein NUP54
Location	Cla97Chr11: 25776002 .. 25780458 (+)
RNA-Seq Expression	Cla97C11G219720
Synteny	Cla97C11G219720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCATCGTTTGCCACCGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCGACTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGTATGTTTCTGAAAGCAATCGGCAAGAAATAGCAACATCTCCTTTCTATTTATGTATCCGCGCCTATTTATTTTGTTTTCGTCGTGTGCATCAGGCAATTGTTGAGGCTTACAAAGACGACGCAGGAAACCCTAAGTATGCTTTTAAGGTTCGTTTCCCCAATCTTGACTGGAAATCGGAATGCCTCCTGTTTTTACCCTCACTAACACTTGAGAGTTGTTGATAATCGTGAGGGAAAATACGATAAGCTTTCTTATCAAGTTGCTCCGAAGTTAATGCTTGTGTTTATTCTGCAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATGTGAGTTCAATGTGTCGCTTTTTTACGTCTGAAGAATTCGCATCTCTTTATATGTATTTATTTTCTGTCGGATTCTACACTAAGTACGGATAATAGTTTGCATTGCCAGATAATGTGGGCTGAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGGTATTTCAATTTACTGCAAAATGTGTCAGCGCTTCAAGGTTGTGTGTCATCCATATTTTTGCTTATTTGATTATGTTGCATGATTTTTTTGCACATCTTTTGTCATAGCTTCAAAATTTCTTATTATCTCCATCAGCGTTGGTGGATTTGCAGGCGTTTCTTTAGAAACCTTAACCATATGTTAATTAACTTAGAGCGGCTATCTAACGTCATGGATCTAATTTGATACTTTGAGCTTTTGGATATATGGATATGAGTGGGTGATCCAAACTTACGTTAGAGAAATGGGACTGAAGAATATAGAATTATGTGTTTAGTCAGCCTGTTTCACAATTTTAAGAGTTAATTTTATTTCAAACTGAATTATTGTATTACCTGTATTATATTAATTTCAATTATCTAGAAAGAGAATATTAAGTGAAGAAATATGTCTATCTACGCAATATTCTAATGTTTTTATATTGGAAACAATGCGTTTGAAATAAATATTTTAGTTTTACAATTATAGCTTCACTTATCATTATTATTCTTTTTTAATTTATAACGTAAATAATAACTATTAAATAAAATAAAAGGAATTATATCAGGACTTGCTGAATGGTTAAAACTAGGCTTAAATTTTATTGTTTATTTGAATAAAAAAATTCTTCTATTATTATTATTATTATTTATTTTATTTTTAAAATAATGAAAATGTACTTTCAATTTTGATGGTGTAAAAAATAATAATTTTTGAAAACTGTACATTAGAGAGTAAGCATCATTAGTAAAATAAAATTCAAACAGTGACCAAGATTTTCGTGAATGTTTGTATCTATAATTTTTTCCCTTATGTATATCTAGGAAGCACAGACATGGATACGATAGGATACAATGATACGCCAACTTCTAAAAAACTAAGATACGGATATGTTGAAGATATGTTGTTTTTTATATCTTTTTTATGATAATGCTCAACTAATTGTTATAATACTTTTTTTAAATTGGATTAAAGTAGATTTAAGAAGAGAGAGAAAAAAAACATCATTGACAAAGCTAAGTGGTGGTTGAGCAACATGCATAGGGAAGGAGTAGAAAGTAGAAGATGAAGATTGAAGAATGAAGTTGAGTCCCTCGTGAATCGTGGTTCAGATAATGAGAAAGAAGAGAAGAAGGAAGATTTTGCTCTCTTTAGTTTTGATTGCTAGATTTAAGTGGACTTTTAAATAAAATGGGTTGTCGGTTGGGCTTTCCAGTGGTTGGACTTCCATTTGGAAGAAAAAAAATGACCCAGCGTATCCACTTCACATACCTGAGAATTTAAAAAAAAATAAATAATAAGATACTTCAAATCACGTATAGGACATGTATTGCCACGTATTTGGACGTATCCATATCAAATACGTATATGATACCGATTATCTGCACAATTAGAAGTATCTTTGCGTGCTAGATGTATATTTGTTAAATTTCAAATGTCTTTGAGGACATTGCCTCTTCCATATCTGTACTGCATCCAGCCCTCTGGGATGATATTTATTGTGACAAATGCTAATGCACTCGGTTGGGAAGTCTTTTCTTTTCCCTTCCAAATAATGATAATGCAGGGTGTGCCAGCCTCTGGTCCATATATTGTTGCCATTCAAAACTTTGAGTAGGAAAGCACAAGTTATATTTGATAGGATGGTAATTATGTTTTATTTCATCTACCAATGCTGGTGAAACAAATGCAATAGCCCAATGACTAGTTTTATGTTTCCATTTAAGATTATTAATAACATGTTCTTGGACGAATGTGATCATTTTTATGATCAAATTGCAAGTGTACGTAAATTGAGAATACCCCATGATGTATTAATTTCGCATATGCTGAAAGTTATAGTCTGCTAGACGTAGTAGCTTCTGCATTTGCTTCCAGCATTCCTTGTGAATGTAAATGTTCTGGAAAGTTGTCACATAAAGAATGTGTTTTGTTTCAGTTTTTGTTTATAAAAATAGTTTTAACATCTAAAAGTATCTGAAATTTTAATGACATTAGATCATTTTTTTAAACTATTTTTTGTGTGAACTTTTCTGCCCATTTTAAGTGGTTTTCCTTTTCACACATCCTTGTGTTTGCTAGTTTGTTGCACTGACGCTCCAGTGGGGTTAATGCAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGGTAATCTTATGCTTCCTTAATGACATATTTTAAATTTCCTATTTCTAATTGATGCTTGATGCATGATGCAGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGGCTTCAAAGGCGTCTGTTGAGAGTATGTTTTATTTTTCCTAATCGGTAGGCTAATATGAAAGGGAAAAAAAAGTGCTATGTATGGGATCTTCAAGTTTTCCTTCCCTCCCGCCTCCCCACCCCCAAAAGATAAAAGTTTATAATGCTGCTGATGCCAAAATGCTTCTATTTTAATTTGACCTTTTCTTCAATTAAAGGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGCCGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTGGCTTTGATAACGAGGCAGGTAGGTATCACTCACCATTTTTACTTTAAACGGGAAATTTCACTCATAATTATCTGACATAAATTATTTCAAAATAGAAGTAACGTGATAGATACAAAGTTTTCAATTATCCTTTTGCAAAAAGATAAACTTTAATGTTGTAATGAATGTTTTTTTTCTCCTAAAAAAATGATATTGTCATTTTGCCTGTAATGAAATTTGAAAGATTTTACTGAAATGTTTAAAGGCCATGTGTGCATTATGATCGATGGTGGAGCATAAACTATAATTGAACTTATAACTAGGGGGAAATATGTTTACTTGTCCCTAAAAGTGCCATCGTAATGATATTCTTGGACACTTTTCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAACTTGCTTACAATTACTCATGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTGCGAATATATTTGTGTTTGGAGTCTGCTTTTTCACTTGTAGTTTTGCTGGAAATAAACATTATGAGGCTTACCAAAATTCCGTTATCAGTCTTTCTAAAAGAAGACATGGTGTAATGATATTATACAAGTGAGAATTTTGGTACATGCAGTTATTTTATTGTCAAATTTATTAACCAACTTCGTCTACGTGTACATGTTGTGTGGCAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCAAGTTAA

mRNA sequence

ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCATCGTTTGCCACCGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCGACTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAAGACGACGCAGGAAACCCTAAGTATGCTTTTAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGCCGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAACTTGCTTACAATTACTCATGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCAAGTTAA

Coding sequence (CDS)

ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCATCGTTTGCCACCGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCGACTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAAGACGACGCAGGAAACCCTAAGTATGCTTTTAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGAGCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGCCGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAACTTGCTTACAATTACTCATGGTCAAGCAAATGGCTCCGGTGCTGGTAACTCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCAAGTTAA

Protein sequence

MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

Homology

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BLAST of Cla97C11G219720 vs. NCBI nr
Match: XP_038893426.1 (nuclear pore complex protein NUP54 [Benincasa hispida])

HSP 1 Score: 706.1 bits (1821), Expect = 1.7e-199
Identity = 378/389 (97.17%), Postives = 382/389 (98.20%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQ QQQLQQSPLFPQ +ATGFGFQTPFA  QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQPQQQLQQSPLFPQPAATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPAGVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRVKPAGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDS+RLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSDRLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLTIT GQANGS AGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTITRGQANGSSAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAED+EMTDDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDREMTDDAS 389

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BLAST of Cla97C11G219720 vs. NCBI nr
Match: XP_004135312.1 (nuclear pore complex protein NUP54 [Cucumis sativus] >KGN51680.1 hypothetical protein Csa_009114 [Cucumis sativus])

HSP 1 Score: 703.7 bits (1815), Expect = 8.6e-199
Identity = 376/389 (96.66%), Postives = 380/389 (97.69%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPF-ATQSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSATGFGFQTPF A QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATGFGFQTPFTAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT+T GQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAEDKEM DDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Cla97C11G219720 vs. NCBI nr
Match: XP_008446043.1 (PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo] >KAA0034202.1 nuclear pore complex protein NUP54 [Cucumis melo var. makuwa] >TYK15718.1 nuclear pore complex protein NUP54 [Cucumis melo var. makuwa])

HSP 1 Score: 703.0 bits (1813), Expect = 1.5e-198
Identity = 378/389 (97.17%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSATGFGFQTPFA  QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAEDKEM DDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Cla97C11G219720 vs. NCBI nr
Match: KAG6573649.1 (Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 662.5 bits (1708), Expect = 2.2e-186
Identity = 354/388 (91.24%), Postives = 368/388 (94.85%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPST 61
           FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGN SSTPAFGTPS+
Sbjct: 19  FGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNFSSTPAFGTPSS 78

Query: 62  SSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQL 121
           SSFATGFGSSLFSTPFSSQPSQ QQQ QQSPLF   +ATGFGFQTPFA  QS+PFPNAQL
Sbjct: 79  SSFATGFGSSLFSTPFSSQPSQPQQQQQQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQL 138

Query: 122 TTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIM 181
           TTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKPAGVSDIM
Sbjct: 139 TTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIM 198

Query: 182 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQR 241
           WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQR
Sbjct: 199 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQR 258

Query: 242 HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ 301
           HFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCR+P+M GEAELAE+LALITRQ
Sbjct: 259 HFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQ 318

Query: 302 LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA 361
           L+GSGAELSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIA
Sbjct: 319 LRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIA 378

Query: 362 RLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           RLG VLKRDVRDMEIIMAEDKEM DD S
Sbjct: 379 RLGTVLKRDVRDMEIIMAEDKEMIDDLS 406

[Close]

BLAST of Cla97C11G219720 vs. NCBI nr
Match: XP_023515339.1 (nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 661.8 bits (1706), Expect = 3.7e-186
Identity = 359/388 (92.53%), Postives = 365/388 (94.07%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPST 61
           FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNL STPAFGTPST
Sbjct: 29  FGTLRSTPAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNL-STPAFGTPST 88

Query: 62  SSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQL 121
           SSFATGFGSSLFSTPFSSQP QQQQQ QQSPLF Q  ATGFGFQTPFA  QS+PFPNAQL
Sbjct: 89  SSFATGFGSSLFSTPFSSQPLQQQQQQQQSPLFQQRGATGFGFQTPFAAPQSSPFPNAQL 148

Query: 122 TTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIM 181
            TQMAPVAPLPF LADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSD M
Sbjct: 149 ITQMAPVAPLPFCLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDTM 208

Query: 182 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQR 241
           WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVIL+D+ERLRMTQSNVKMLQR
Sbjct: 209 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILADAERLRMTQSNVKMLQR 268

Query: 242 HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ 301
           HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKL+LITRQ
Sbjct: 269 HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLSLITRQ 328

Query: 302 LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA 361
            K SGAELSRRVQNLL IT GQ NGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA
Sbjct: 329 FKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA 388

Query: 362 RLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           RLG VLKRDVRDMEIIMAED EMTDD S
Sbjct: 389 RLGTVLKRDVRDMEIIMAEDNEMTDDPS 415

[Close]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot
Match: Q8GYF7 (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 1.9e-140
Identity = 271/378 (71.69%), Postives = 316/378 (83.60%), Query Frame = 0


Query: 20  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFS 79
           FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 80  SQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----ATQSTPFPNAQLTTQMAPVAP 139
           SQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF       Q TPFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 140 LPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 199
           +P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 200 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPW 259
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 260 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS 319
           ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 320 RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 379
           RRVQ+L TI+  QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 380 VRDMEIIMAEDKEMTDDA 388
           +RDMEI++AED EM  D+
Sbjct: 362 MRDMEIMVAEDTEMALDS 377

[Close]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot
Match: Q9VDV3 (Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-10
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 2   FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 61
           FGA  +++ AFGT  +TPAFG P +T AFG PA+TPAFG  +A+PAFG  ++TPAFG P+
Sbjct: 82  FGATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPAFGAPA 141

Query: 62  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFATQSTPFPNA-- 121
            +S    FG+   +T F +  S Q            + A  F F TP  +  T  P A  
Sbjct: 142 ATS---AFGAPAATTAFGAPASTQASAFGAPAPAVGTVAPTFSFATPATSAPTTAPPAFG 201

Query: 122 QLTTQMAPVAPLPFSLA 136
             TT     A +P SL+
Sbjct: 202 FGTTATTAAAAMPASLS 215

[Close]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot
Match: Q8BTS4 (Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-07
Identity = 55/204 (26.96%), Postives = 103/204 (50.49%), Query Frame = 0


Query: 173 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQ 232
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 233 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAE 292
            ++  LQ++    T+  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 423

Query: 293 KLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 352
           +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 353 QQQTEAIARLGNVLKRDVRDMEII 377
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

[Close]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot
Match: P70582 (Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-07
Identity = 55/204 (26.96%), Postives = 103/204 (50.49%), Query Frame = 0


Query: 173 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQ 232
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 233 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAE 292
            ++  LQ++    T+  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQAEEEQLRV 423

Query: 293 KLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 352
           +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 353 QQQTEAIARLGNVLKRDVRDMEII 377
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

[Close]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot
Match: Q7Z3B4 (Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-07
Identity = 54/204 (26.47%), Postives = 103/204 (50.49%), Query Frame = 0


Query: 173 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQ 232
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 360

Query: 233 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAE 292
            ++  LQ++    ++  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 361 EDISELQKN-QTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 420

Query: 293 KLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 352
           +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L
Sbjct: 421 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVRS---EERYYIDADLLREIKQHL 480

Query: 353 QQQTEAIARLGNVLKRDVRDMEII 377
           +QQ E ++ L +++K D+ D++++
Sbjct: 481 KQQQEGLSHLISIIKDDLEDIKLV 491

[Close]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL
Match: A0A0A0KPW8 (Nup54 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589970 PE=4 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 4.1e-199
Identity = 376/389 (96.66%), Postives = 380/389 (97.69%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPF-ATQSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSATGFGFQTPF A QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATGFGFQTPFTAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT+T GQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAEDKEM DDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL
Match: A0A5A7SSX4 (Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002170 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 7.1e-199
Identity = 378/389 (97.17%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSATGFGFQTPFA  QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAEDKEM DDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL
Match: A0A1S3BE47 (nuclear pore complex protein NUP54 OS=Cucumis melo OX=3656 GN=LOC103488894 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 7.1e-199
Identity = 378/389 (97.17%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQ 120
           TSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSATGFGFQTPFA  QSTPFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLGNVLKRDVRDMEIIMAEDKEM DDAS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL
Match: A0A6J1DDY9 (nuclear pore complex protein NUP54 OS=Momordica charantia OX=3673 GN=LOC111019650 PE=4 SV=1)

HSP 1 Score: 661.4 bits (1705), Expect = 2.4e-186
Identity = 358/389 (92.03%), Postives = 367/389 (94.34%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60
           MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSS---------AFGTPQSTPAFGTPSSTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQ 120
           TS+F TGFGSSLFSTPFSSQPSQQ QQ QQSPLF Q  ATGFGFQTPFA  QSTPFPNAQ
Sbjct: 61  TSTFGTGFGSSLFSTPFSSQPSQQPQQQQQSPLFQQPPATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+RAKPAGVSDI
Sbjct: 121 LTTQMAPVAPLPFSMADRDIQAIVEAYKDEAGNPKYAFKHLLFSVTDPQFRAKPAGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240
           MWAEAM KLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMTKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR 300
           RHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Sbjct: 241 RHFLADTLPWVQRLRQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT T GQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTFTRGQANGSNSGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           ARLG VLKRDVRDMEIIMAEDKEMTDDAS
Sbjct: 361 ARLGIVLKRDVRDMEIIMAEDKEMTDDAS 380

[Close]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL
Match: A0A6J1G105 (nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 5.8e-185
Identity = 353/388 (90.98%), Postives = 367/388 (94.59%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPST 61
           FG   S+ AFGTPQSTPAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+
Sbjct: 20  FGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSS 79

Query: 62  SSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT-QSTPFPNAQL 121
           SSFATGFGSSLFSTPFSSQPSQQQQ  QQSPLF   +ATGFGFQTPFA  QS+PFPNAQL
Sbjct: 80  SSFATGFGSSLFSTPFSSQPSQQQQ--QQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQL 139

Query: 122 TTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIM 181
           TTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKPAGVSDIM
Sbjct: 140 TTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIM 199

Query: 182 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQR 241
           WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQR
Sbjct: 200 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQR 259

Query: 242 HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ 301
           HFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCR+P+M GEAELAE+LALITRQ
Sbjct: 260 HFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQ 319

Query: 302 LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA 361
           L+GSGAELSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIA
Sbjct: 320 LRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIA 379

Query: 362 RLGNVLKRDVRDMEIIMAEDKEMTDDAS 389
           RLG VLKRDVRDMEIIMAEDKEM DD S
Sbjct: 380 RLGTVLKRDVRDMEIIMAEDKEMIDDLS 405

[Close]

BLAST of Cla97C11G219720 vs. TAIR 10
Match: AT1G24310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). )

HSP 1 Score: 500.4 bits (1287), Expect = 1.3e-141
Identity = 271/378 (71.69%), Postives = 316/378 (83.60%), Query Frame = 0


Query: 20  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFS 79
           FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 80  SQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----ATQSTPFPNAQLTTQMAPVAP 139
           SQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF       Q TPFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 140 LPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 199
           +P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 200 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPW 259
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 260 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS 319
           ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 320 RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 379
           RRVQ+L TI+  QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 380 VRDMEIIMAEDKEMTDDA 388
           +RDMEI++AED EM  D+
Sbjct: 362 MRDMEIMVAEDTEMALDS 377

The following BLAST results are available for this feature:

BLAST of Cla97C11G219720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893426.1	1.7e-199	97.17	nuclear pore complex protein NUP54 [Benincasa hispida]	[more]
XP_004135312.1	8.6e-199	96.66	nuclear pore complex protein NUP54 [Cucumis sativus] >KGN51680.1 hypothetical pr...	[more]
XP_008446043.1	1.5e-198	97.17	PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo] >KAA0034202.1 nucle...	[more]
KAG6573649.1	2.2e-186	91.24	Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023515339.1	3.7e-186	92.53	nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C11G219720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYF7	1.9e-140	71.69	Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1...	[more]
Q9VDV3	9.1e-10	40.88	Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 P...	[more]
Q8BTS4	2.5e-07	26.96	Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1	[more]
P70582	2.5e-07	26.96	Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 S...	[more]
Q7Z3B4	9.4e-07	26.47	Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2	[more]

BLAST of Cla97C11G219720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPW8	4.1e-199	96.66	Nup54 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589970 PE=4 ...	[more]
A0A5A7SSX4	7.1e-199	97.17	Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BE47	7.1e-199	97.17	nuclear pore complex protein NUP54 OS=Cucumis melo OX=3656 GN=LOC103488894 PE=4 ...	[more]
A0A6J1DDY9	2.4e-186	92.03	nuclear pore complex protein NUP54 OS=Momordica charantia OX=3673 GN=LOC11101965...	[more]
A0A6J1G105	5.8e-185	90.98	nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684...	[more]

BLAST of Cla97C11G219720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24310.1	1.3e-141	71.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 338..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR13000:SF0	NUCLEOPORIN P54	coord: 1..382
IPR025712	Nucleoporin Nup54, alpha-helical domain	PFAM	PF13874	Nup54	coord: 172..316 e-value: 2.5E-29 score: 102.2
IPR024864	Nucleoporin Nup54/Nup57/Nup44	PANTHER	PTHR13000	NUCLEOPORIN P54	coord: 1..382

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G219720.1	Cla97C11G219720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0036228	protein localization to nuclear inner membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0017056	structural constituent of nuclear pore