Cla97C11G219590 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G219590
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	NADH-ubiquinone oxidoreductase 11 kDa subunit
Location	Cla97Chr11: 25676548 .. 25676991 (+)
RNA-Seq Expression	Cla97C11G219590
Synteny	Cla97C11G219590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGACTCACCTGAATTTAGTTTCACGATTGAAATATTTTCTTAGGTTTTTCTTGAGCAGAAACCACGATTTCAAGTGAATTCCATGTTCGATGATTCGTTTATTCCGAGTTTTTTTTACGTCTTCTTTAATTCGCTAATTTCTCAGGAATATATTAGTAGAAATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTTTATGCAGTCAAGGATCGGTGCCAGAAGACGAAGGAGATGTGGAGCTATCCTCTTCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAAGTGGGACGCACAAATTAGCCAGGCTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCTACAATAACTCCAAGTGA

mRNA sequence

ATGTTTCTGACTCACCTGAATTTAGTTTCACGATTGAAATATTTTCTTAGGAATATATTAGTAGAAATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTTTATGCAGTCAAGGATCGGTGCCAGAAGACGAAGGAGATGTGGAGCTATCCTCTTCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAAGTGGGACGCACAAATTAGCCAGGCTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCTACAATAACTCCAAGTGA

Coding sequence (CDS)

ATGTTTCTGACTCACCTGAATTTAGTTTCACGATTGAAATATTTTCTTAGGAATATATTAGTAGAAATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTTTATGCAGTCAAGGATCGGTGCCAGAAGACGAAGGAGATGTGGAGCTATCCTCTTCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAAGTGGGACGCACAAATTAGCCAGGCTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCTACAATAACTCCAAGTGA

Protein sequence

MFLTHLNLVSRLKYFLRNILVEMKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLKWDAQISQAPGRRDPYDDMLQDIYNNSK

Homology

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BLAST of Cla97C11G219590 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 191.0 bits (484), Expect = 5.4e-45
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKFVMEFAENLVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1   MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           SQLKWDAQISQAPGRRDPYDDMLQDI NNSK
Sbjct: 61  SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKFVMEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1   MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           SQL+WDAQISQAPGRRDPYDDMLQDI NNSK
Sbjct: 61  SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. NCBI nr
Match: KAG7012731.1 (hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 21  VEMKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFER 80
           +EMKF+MEFAENLVLR+MEDPKERDRKFRE +YAVKDRCQKTKEMWSYPLRPYGFWTF+R
Sbjct: 88  LEMKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDR 147

Query: 81  HNSQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           HN+QL WDAQISQ PGRRDPYDDMLQDI+NNSK
Sbjct: 148 HNAQLHWDAQISQVPGRRDPYDDMLQDIHNNSK 180

[Close]

BLAST of Cla97C11G219590 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 14  YFLRNILVEMKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPY 73
           + +RNIL EMKF+MEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPY
Sbjct: 38  FSIRNIL-EMKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPY 97

Query: 74  GFWTFERHNSQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           GFWTF+RHNSQLKWD QISQ PGRRDPYDDMLQD  N+SK
Sbjct: 98  GFWTFDRHNSQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136

[Close]

BLAST of Cla97C11G219590 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
            QL+WDAQISQ PGRRDPYDD+L DI NNSK
Sbjct: 61  CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKFVMEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1   MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           SQL+WDAQISQAPGRRDPYDDMLQDI NNSK
Sbjct: 61  SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
            QL+WDAQISQ PGRRDPYDD+L DI NNSK
Sbjct: 61  CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKF+MEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
            QL+WDAQISQ PGRRDPYDD+L DI NNSK
Sbjct: 61  CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKF+MEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           SQLKWD QISQ PGRRDPYDD+LQD  NNSK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           MKF+MEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIYNNSK 114
           SQLKWD QISQ PGRRDPYDD+LQD  NNSK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of Cla97C11G219590 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-36
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           M F+MEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIY 110
           +QL+WD QISQ  GRRDPYDD+L+D Y
Sbjct: 61  AQLRWDPQISQVAGRRDPYDDLLEDNY 87

[Close]

BLAST of Cla97C11G219590 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-36
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 23  MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 82
           M F+MEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 83  SQLKWDAQISQAPGRRDPYDDMLQDIY 110
           +QL+WD QISQ  GRRDPYDD+L+D Y
Sbjct: 61  AQLRWDPQISQVAGRRDPYDDLLEDNY 87

The following BLAST results are available for this feature:

BLAST of Cla97C11G219590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891434.1	5.4e-45	97.80	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]
XP_022151828.1	3.5e-44	95.60	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
KAG7012731.1	5.1e-43	89.25	hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8648679.1	5.1e-43	85.00	hypothetical protein Csa_008887 [Cucumis sativus]	[more]
XP_022956462.1	1.5e-42	91.21	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]

BLAST of Cla97C11G219590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G219590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD92	1.7e-44	95.60	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K907	7.2e-43	91.21	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	7.2e-43	91.21	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A1S3BE41	1.8e-41	89.01	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	1.8e-41	89.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cla97C11G219590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	3.8e-36	73.56	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	3.8e-36	73.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 23..107 e-value: 1.7E-51 score: 172.8
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 23..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G219590.1	Cla97C11G219590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0046872	metal ion binding