Cla97C11G219455 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G219455
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionCytochrome oxidase assembly protein
LocationCla97Chr11: 25585374 .. 25587818 (+)
RNA-Seq ExpressionCla97C11G219455
SyntenyCla97C11G219455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATATTCGTTATGCACGGGGTCGATCTGAATTTTGATTACGTCCTTATGGTTTGCTTGACTGGTCATGGCGTAGAGCTTACTTTCGTTCATCAATGTCTTAATTATTATTGATGGTAAATAAAACTTAGGAAATGTAAACGCTAGCTAGTTTCACGTAGGAGAACGAACAATGAAACAACACTTCAAATATGTGAACCTAGTATCCGGTATAACCGTGAGTGGTTAACATCTGAATTCTAGAAAACCTTTGTAAGAACCACCTTACTTGAAGAGGATCTATTCTATAGGTGGGTCGGGTTGTATATTGGTGCCCTAAAGCTCTAAGAGACCATGGTAAGAAGAAAACTGCATGCCATATGAGTTTGATCATTGGTCCATGTGGACCAAAGAGTATCCAACTTTTGTAGTGTCCAATCGGTTGGCAAAGTAACAGTAAGAACGATCCTGATGGTACTAGCTTGGACTAAAATATGAAAGGTTTGACAATGATCAACATCCAGGGATTAAAATCTCTAATCCATTAATTGACATTTTAATGAGTTTCTGTTCCATCTAGATATCTCTTGATTTTAATTATCTTTTCACACCTTGCAACCTTAGATGAGGAACTTGGTTGGCAACGCTTTGGACAAATTTCTCAGGAAGTTGTCAATAACCATAGATTTACCGTTCGAAGTGGAATCCATTTAGTCTGCCAGGGATTCATGCTTCCCGATGATTTGTAACCATTCTGTTTCTGAGGTACCCATGGCTACTTTTTCCTTCACTTGTACGTTTCCTTAGCTGAGCATTTAATCCTCTGCTGCCATCTTAATAAAGCAGATATATTAATGGAAAGATCACTTTTGTTAATATGTTTGTATACTCGTACTTCATAGTGCATGATAGACCCAAGCATTGCTTAATGGTCTAACAAATTAGAACTTACTGAAATATTACTAGATGAACAGATATTCCAAACAAAAGCGTCTTGGAGATGTCTCCTTAACGTATTTTCATGGTTTGTTATTTTCTCTCCTTTTGTATAATTTGATTAAGGGTAGAGTGAATTTTCTCGATGAGCTTCCCCTAACAAGCAATAGCCCTTGACATTCAGTTTTATCGATTCATCATTGGTCTTTGCTAGACTTGTTCGTTGTGTAACAAAAAAACAACAAAAGAAGAGAACGAAAGTGGAAACAAGAGAGAAAATTTGCACGGGGGATCAAGGATTTCAAGCAAGTTCTATAATCATTCAAGTGGAAACATTACAAGTATTATAGTCAAATAACTACCCATTAATGCACTAAACTTAAAACTCTACCACTAATCTTGAAAATCTCTCTTGATCAATCCCATGAAACCATTAGGTCACTAACTCCTGAATAAAAGCCACTACCCCTAAATAAAAGCCAATAGCATAAACTAAAACTAAAATCAATTTGGTCTATGAAGCACAAATACTTCAAAATGCATAGGTATCACATACATATTTGATATTGATGCATGGTAGATACGTGAAATGGAGTATTTGATTCTTCTTTTTAAATTTCGAACACGCGTGTCCTCGAAGACGACGTACAAGGAAAAAAATTGAATATTTGGGCTAAATTTTAAGCCCACAGCCCACTTACCCTTAATTTCATAACATTATTATAATTAGATCAGCTCAAAAAGAAATAAATATTTCTTCTCTTAGTCTTCACCTGCAACCCTAAAAATTTCAACTACCGCACCTCAGCTCGTATCCCATACTGCCGTGCCTCAGTTCGCTCAACCATCCTTGCCGCACCTTGCTGCCGCCGTTGCCGGTCAGTTTTAAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTCACTCTCTTTTGAAATATCCTTTTAACGGTAGTTAGGTAGTATGACATCTTTATGCTTAAGCCAAGGTCAATCATCAGATCCATAAACTCAACCTCCCCCATTGTTGAAGATGATTCTAAATCTCTTTGGCAATATGTGACCAAAATTCATAAATTAGTTTGGTATTTTATGAATTGGTGGATTACATCTAGTATCTTCTTATATCTTAGTTTTTTAGAAATTAATGAATTGTGATATCGTACTTGTGCTTCATAGAATTTGATTAACACCTTGTGTGAAAAGCCATTATATTGGCATTGGGGATAGTAGTCTAATTGATTGAATATCGACAAAATTTGCAGCGTTAAAAGCTCGAAAATAGCAGTGTGTTTGGCTGCTAAATGGCTGGAATTTTGGGATATAGGGGCCTTGGAGCCAAGACAAAGAATATTGTTGTTGCCGGAGGTTTAACTGCCTTCGTTTTCGGGGTATATTTCTACACGATGAGAGCTGTTGGAGGTTCAGATGAACTGCAAGTAGCCATAGACCAATTTGAAGCACAGAAAAGCAACAAAGATTAG

mRNA sequence

ATGTCTATATTCGTTATGCACGGGGTCGATCTGAATTTTGATTACGTCCTTATGGTTTGCTTGACTGGTCATGGCGTAGAGCTTACTTTCTGTCCAATCGGTTGGCAAAGTAACAGTAAGAACGATCCTGATGATGAGGAACTTGGTTGGCAACGCTTTGGACAAATTTCTCAGGAAGTTGTCAATAACCATAGATTTACCGTTCGAAGTGGAATCCATTTAGTCTGCCAGGGATTCATGCTTCCCGATGATTTATATTCCAAACAAAAGCGTCTTGGAGATGTCTCCTTAACGTATTTTCATGCTCGTATCCCATACTGCCGTGCCTCAGTTCGCTCAACCATCCTTGCCGCACCTTGCTGCCGCCGTTGCCGGGGCCTTGGAGCCAAGACAAAGAATATTGTTGTTGCCGGAGGTTTAACTGCCTTCGTTTTCGGGGTATATTTCTACACGATGAGAGCTGTTGGAGGTTCAGATGAACTGCAAGTAGCCATAGACCAATTTGAAGCACAGAAAAGCAACAAAGATTAG

Coding sequence (CDS)

ATGTCTATATTCGTTATGCACGGGGTCGATCTGAATTTTGATTACGTCCTTATGGTTTGCTTGACTGGTCATGGCGTAGAGCTTACTTTCTGTCCAATCGGTTGGCAAAGTAACAGTAAGAACGATCCTGATGATGAGGAACTTGGTTGGCAACGCTTTGGACAAATTTCTCAGGAAGTTGTCAATAACCATAGATTTACCGTTCGAAGTGGAATCCATTTAGTCTGCCAGGGATTCATGCTTCCCGATGATTTATATTCCAAACAAAAGCGTCTTGGAGATGTCTCCTTAACGTATTTTCATGCTCGTATCCCATACTGCCGTGCCTCAGTTCGCTCAACCATCCTTGCCGCACCTTGCTGCCGCCGTTGCCGGGGCCTTGGAGCCAAGACAAAGAATATTGTTGTTGCCGGAGGTTTAACTGCCTTCGTTTTCGGGGTATATTTCTACACGATGAGAGCTGTTGGAGGTTCAGATGAACTGCAAGTAGCCATAGACCAATTTGAAGCACAGAAAAGCAACAAAGATTAG

Protein sequence

MSIFVMHGVDLNFDYVLMVCLTGHGVELTFCPIGWQSNSKNDPDDEELGWQRFGQISQEVVNNHRFTVRSGIHLVCQGFMLPDDLYSKQKRLGDVSLTYFHARIPYCRASVRSTILAAPCCRRCRGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD
Homology
[Close]
BLAST of Cla97C11G219455 vs. NCBI nr
Match: XP_038891345.1 (uncharacterized protein LOC120080790 [Benincasa hispida] >XP_038891346.1 uncharacterized protein LOC120080790 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           RGLG KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKS+KD
Sbjct: 8   RGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSDKD 59

[Close]
BLAST of Cla97C11G219455 vs. NCBI nr
Match: XP_022956375.1 (uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 uncharacterized protein LOC111493381 [Cucurbita maxima] >XP_023522138.1 uncharacterized protein LOC111785987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           RGL  KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK NKD
Sbjct: 8   RGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 59

[Close]
BLAST of Cla97C11G219455 vs. NCBI nr
Match: KAG6601607.1 (hypothetical protein SDJN03_06840, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           RGL  KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK NKD
Sbjct: 8   RGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 59

[Close]
BLAST of Cla97C11G219455 vs. NCBI nr
Match: XP_016900171.1 (PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo] >KAA0034183.1 uncharacterized protein E6C27_scaffold65G001780 [Cucumis melo var. makuwa] >TYK15737.1 uncharacterized protein E5676_scaffold35G002370 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 126 GLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           GLG KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQKSNK+
Sbjct: 9   GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKE 59

[Close]
BLAST of Cla97C11G219455 vs. NCBI nr
Match: KAG7032365.1 (hypothetical protein SDJN02_06410, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-16
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           +GL  KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK NKD
Sbjct: 37  QGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 88

[Close]
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match: A0A6J1KHY0 (uncharacterized protein LOC111493381 OS=Cucurbita maxima OX=3661 GN=LOC111493381 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           RGL  KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK NKD
Sbjct: 8   RGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 59

[Close]
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match: A0A6J1GXM1 (uncharacterized protein LOC111458133 OS=Cucurbita moschata OX=3662 GN=LOC111458133 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 125 RGLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           RGL  KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK NKD
Sbjct: 8   RGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKD 59

[Close]
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match: A0A5A7SUP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002370 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 126 GLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           GLG KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQKSNK+
Sbjct: 9   GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKE 59

[Close]
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match: A0A1S4DW05 (uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 126 GLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           GLG KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FEAQKSNK+
Sbjct: 9   GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKE 59

[Close]
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match: A0A0A0KPU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.0e-16
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 126 GLGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSNKD 177
           GLG KTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+
Sbjct: 9   GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKE 59

[Close]
BLAST of Cla97C11G219455 vs. TAIR 10
Match: AT2G43780.1 (unknown protein; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 127 LGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK 173
           LG K KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK
Sbjct: 10  LGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55

[Close]
BLAST of Cla97C11G219455 vs. TAIR 10
Match: AT2G43780.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 127 LGAKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQK 173
           LG K KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK
Sbjct: 10  LGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55

The following BLAST results are available for this feature:
BLAST of Cla97C11G219455 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038891345.13.3e-1796.15uncharacterized protein LOC120080790 [Benincasa hispida] >XP_038891346.1 unchara... [more]
XP_022956375.11.3e-1694.23uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 unchar... [more]
KAG6601607.11.3e-1694.23hypothetical protein SDJN03_06840, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_016900171.12.8e-1694.12PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo] >KAA0034183.1 unc... [more]
KAG7032365.13.7e-1692.31hypothetical protein SDJN02_06410, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C11G219455 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G219455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KHY06.2e-1794.23uncharacterized protein LOC111493381 OS=Cucurbita maxima OX=3661 GN=LOC111493381... [more]
A0A6J1GXM16.2e-1794.23uncharacterized protein LOC111458133 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
A0A5A7SUP41.4e-1694.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DW051.4e-1694.12uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=... [more]
A0A0A0KPU84.0e-1692.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1[more]
BLAST of Cla97C11G219455 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43780.11.1e-1586.96unknown protein; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bac... [more]
AT2G43780.21.1e-1586.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36744:SF2CYTOCHROME OXIDASE ASSEMBLY PROTEINcoord: 124..175
NoneNo IPR availablePANTHERPTHR36744CYTOCHROME OXIDASE ASSEMBLY PROTEINcoord: 124..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G219455.1Cla97C11G219455.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane