Cla97C11G218920 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G218920
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCla97Chr11: 25156183 .. 25156780 (-)
RNA-Seq ExpressionCla97C11G218920
SyntenyCla97C11G218920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAAACAAATAGCACGTCCTTCCACTAAAATAGGTTGGAAGCCCTGGATGCCTAATCTAGTCATTGACTCAAACCTATTTTCCCCTTCCAATAGTTTTCTATTAGAGCTTCCCTCATTCCTTTTATTGAACATAATGATGTGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCACTTTAGCCGAACACAAGGGAAAAATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATATGTATACTCGAAGAATTTTATTAGTTATTTATCAACGTTCTAACAAAAATACCTGTATGCAACAAAAATCCCAGGTTCACTAGGGTAAATGCATTAAAAAATGGCAAATTTTAGCGGATGATGCTGCTACAGTTGGTGGCGAACTTGCTTTGAGAAAAATGTATTAGTAGCTTATATGCAATGGAAAGGTTACAATTTTGAAAATGCGGTACTACTTAGCGAGTGATGGGTATATAAAGATATTTATACTTCTTTCCACAAATTAA

mRNA sequence

ATGGATTTTTCTATTAGAGCTTCCCTCATTCCTTTTATTGAACATAATGATGTGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCACTTTAGCCGAACACAAGGGAAAAATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATATGTATACTCGAAGAATTTTATTAGTTATTTATCAACGTTCTAACAAAAATACCTGTATGCAACAAAAATCCCAGCTTATATGCAATGGAAAGGTTACAATTTTGAAAATGCGGTACTACTTAGCGAGTGATGGGTATATAAAGATATTTATACTTCTTTCCACAAATTAA

Coding sequence (CDS)

ATGGATTTTTCTATTAGAGCTTCCCTCATTCCTTTTATTGAACATAATGATGTGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCACTTTAGCCGAACACAAGGGAAAAATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATATGTATACTCGAAGAATTTTATTAGTTATTTATCAACGTTCTAACAAAAATACCTGTATGCAACAAAAATCCCAGCTTATATGCAATGGAAAGGTTACAATTTTGAAAATGCGGTACTACTTAGCGAGTGATGGGTATATAAAGATATTTATACTTCTTTCCACAAATTAA

Protein sequence

MDFSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEHKGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQLICNGKVTILKMRYYLASDGYIKIFILLSTN
Homology
[Close]
BLAST of Cla97C11G218920 vs. NCBI nr
Match: YP_009525178.1 (RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94568.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94654.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94738.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94823.1 RNA polymerase beta subunit [Hodgsonia macrocarpa])

HSP 1 Score: 187.2 bits (474), Expect = 9.4e-44
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAT+AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. NCBI nr
Match: YP_009751645.1 (RNA polymerase subunit beta [Hodgsonia heteroclita] >QIT04378.1 RNA polymerase subunit beta [Hodgsonia heteroclita])

HSP 1 Score: 187.2 bits (474), Expect = 9.4e-44
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAT+AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. NCBI nr
Match: YP_009468853.1 (RNA polymerase beta subunit [Gynostemma compressum] >AVA29809.1 RNA polymerase beta subunit [Gynostemma compressum])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 RGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. NCBI nr
Match: YP_009236272.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polymerase beta subunit [Gynostemma longipes] >AMF83983.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ANI25177.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ATG86892.1 RNA polymerase beta subunit [Gynostemma longipes])

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LVIYQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. NCBI nr
Match: ART64964.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum])

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LVIYQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-46
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match: Q14FG5 (DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-40
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPL+RSEKCIVGTGLERQVA DSGV  +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLARSEKCIVGTGLERQVALDSGVPAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKIIYTD DKII SGN YT  I LV+YQRSNKNTCM QK+Q+
Sbjct: 584 EGKIIYTDIDKIILSGNGYTVSIPLVMYQRSNKNTCMHQKTQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match: A4GYQ0 (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa OX=3694 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-40
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPL+RSEKCIVGTGLERQVA DSGV  +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLARSEKCIVGTGLERQVALDSGVPAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKIIYTD DKII SGN YT  I LV+YQRSNKNTCM QK+Q+
Sbjct: 584 EGKIIYTDIDKIILSGNGYTVSIPLVMYQRSNKNTCMHQKTQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match: A4QL98 (DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum OX=59292 GN=rpoB PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-40
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV  +AEH
Sbjct: 526 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEH 585

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKI+YTDT+KIIFSGN  T  I L++YQRSNKNTCM QK Q+
Sbjct: 586 EGKILYTDTEKIIFSGNGDTLSIPLIMYQRSNKNTCMHQKPQV 628

[Close]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match: P50546 (DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB PE=3 SV=4)

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-40
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV  +AEH
Sbjct: 526 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEH 585

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKI+YTDT+KI+FSGN  T  I L++YQRSNKNTCM QK Q+
Sbjct: 586 EGKILYTDTEKIVFSGNGDTLSIPLIMYQRSNKNTCMHQKPQV 628

[Close]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match: A0A346QN83 (DNA-directed RNA polymerase subunit beta OS=Hodgsonia macrocarpa OX=2184935 GN=rpoB PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAT+AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match: A0A6H0EPT7 (DNA-directed RNA polymerase subunit beta OS=Hodgsonia heteroclita OX=386184 GN=rpoB PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAT+AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match: A0A2L0WR02 (DNA-directed RNA polymerase subunit beta OS=Gynostemma compressum OX=1348125 GN=rpoB PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.9e-44
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKIIYTDTDKIIFSGN YTRRI LV+YQRSNKNTCMQQKSQ+
Sbjct: 584 RGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match: A0A109WXU0 (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN=rpoB PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.7e-44
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LVIYQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match: A0A286QM55 (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN=rpoB PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.7e-44
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVA +AEH
Sbjct: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEH 583

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
            GKIIYTDTDKIIFSGN YTRRI LVIYQRSNKNTCMQQKSQ+
Sbjct: 584 GGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQKSQV 626

[Close]
BLAST of Cla97C11G218920 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-41
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 3   FSIRASLIPFIEHNDVNRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVATLAEH 62
           FSI ASLIPFIEHND NRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV  +AEH
Sbjct: 526 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEH 585

Query: 63  KGKIIYTDTDKIIFSGNMYTRRILLVIYQRSNKNTCMQQKSQL 106
           +GKI+YTDT+KI+FSGN  T  I L++YQRSNKNTCM QK Q+
Sbjct: 586 EGKILYTDTEKIVFSGNGDTLSIPLIMYQRSNKNTCMHQKPQV 628

The following BLAST results are available for this feature:
BLAST of Cla97C11G218920 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009525178.19.4e-4492.23RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94568.1 RNA polymerase be... [more]
YP_009751645.19.4e-4492.23RNA polymerase subunit beta [Hodgsonia heteroclita] >QIT04378.1 RNA polymerase s... [more]
YP_009468853.11.2e-4391.26RNA polymerase beta subunit [Gynostemma compressum] >AVA29809.1 RNA polymerase b... [more]
YP_009236272.11.6e-4392.23RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polyme... [more]
ART64964.11.6e-4392.23RNA polymerase beta subunit [Gynostemma pentaphyllum][more]
BLAST of Cla97C11G218920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP14.7e-4691.26DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Q14FG51.0e-4082.52DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 S... [more]
A4GYQ01.0e-4082.52DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa OX=3694 GN=rpoB ... [more]
A4QL982.2e-4081.55DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum OX=59292 GN=rpoB... [more]
P505462.9e-4080.58DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB... [more]
BLAST of Cla97C11G218920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A346QN834.5e-4492.23DNA-directed RNA polymerase subunit beta OS=Hodgsonia macrocarpa OX=2184935 GN=r... [more]
A0A6H0EPT74.5e-4492.23DNA-directed RNA polymerase subunit beta OS=Hodgsonia heteroclita OX=386184 GN=r... [more]
A0A2L0WR025.9e-4491.26DNA-directed RNA polymerase subunit beta OS=Gynostemma compressum OX=1348125 GN=... [more]
A0A109WXU07.7e-4492.23DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN... [more]
A0A286QM557.7e-4492.23DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN... [more]
BLAST of Cla97C11G218920 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.12.1e-4180.58RNA polymerase subunit beta [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 3..57
e-value: 3.7E-33
score: 116.3
NoneNo IPR availableGENE3D2.40.50.100coord: 58..105
e-value: 3.7E-33
score: 116.3
NoneNo IPR availablePANTHERPTHR20856:SF30DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 3..102
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..112
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G218920.2Cla97C11G218920.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding