Cla97C11G215510 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G215510
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr11: 12128155 .. 12129090 (+)
RNA-Seq ExpressionCla97C11G215510
SyntenyCla97C11G215510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGCTTGGAGGGCGGCCGGGGTCAAAAAAGAAAACCCGTTTATTGTCCGACTCTTTTATTTTTTATTTTATTTTATTTTATTTTTTCTATTTTCAGCCCACGGACTTCCCGCTTCTCACCAGTTCTTTGTTTTTACTTTTTTTTATTTGTATTTTTTTCCCTTTTTATTATTATTATTTTTTCCTTTTTCCGTTTCTTTCTTGCGAACTCCTTCCGGCGGTTTCAATTCAAATACATAGGGTGAATAAAAATGTCTAAGGAAACTTTCATCACAATTAATTCATACCCGTAACCTTCAATCCCTCTACATTTTGATCCGTTTCTTCTTATCTCTACCATGTTTCTGCAGTTTCTTCTCAATTCAAACGCCTTTAGATCCTCCAACCTTCTTCATCACTCCGTTTTCGTTAAGAAAGATCTGTTGCTGGATTCTGGATTCTGGTTTCGTTTTTGTCACCCCAGACGTTATAGTGTTCTGAATTCTCATCCTCATCAATCGTGTATACTATTTCTTCTCCTTGCTATTTTCTTTCTATTCATGCTTGTTTGATGGTCTGGAAATCAACGATGATTTTTTTATTTTTTATTTTTATTTGTATTATGTTTGAATTTGGAGGTGGAAGATTTTTCGAAATGGAAGTGGACGAGTTTGATATTAGTCATGTGTGAGTGATGTTGCTAGTGAGAGGAATTCACTTTGACTATCCCGCGTTTTTATAATGGTGCTGTTGTTTATGATGTTGAGAAGAATTGTTGTTTCTGTACTTTGCACGGAGTTTAAATTTATAGGAATGCTCTTTGTTGGACTTGCACAGATTTCTTCCCCCAAAACCATGGTTGGATAACTTCTATGTTTTATTTTGCATCAACTCTTTCCATTGTGTCAACCGTTTTGCAGGCTCTTGAATGCTAAATTTGAAAGGTGCTGA

mRNA sequence

ATGGAAAAGGCTTGGAGGGCGGCCGGGGTCAAAAAAGAAAACCCCCCACGGACTTCCCGCTTCTCACCATTTCTTCTCAATTCAAACGCCTTTAGATCCTCCAACCTTCTTCATCACTCCGTTTTCGTTAAGAAAGATCTGTTGCTGGATTCTGGATTCTGGCTCTTGAATGCTAAATTTGAAAGGTGCTGA

Coding sequence (CDS)

ATGGAAAAGGCTTGGAGGGCGGCCGGGGTCAAAAAAGAAAACCCCCCACGGACTTCCCGCTTCTCACCATTTCTTCTCAATTCAAACGCCTTTAGATCCTCCAACCTTCTTCATCACTCCGTTTTCGTTAAGAAAGATCTGTTGCTGGATTCTGGATTCTGGCTCTTGAATGCTAAATTTGAAAGGTGCTGA

Protein sequence

MEKAWRAAGVKKENPPRTSRFSPFLLNSNAFRSSNLLHHSVFVKKDLLLDSGFWLLNAKFERC
Homology
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BLAST of Cla97C11G215510 vs. NCBI nr
Match: KAG7015916.1 (hypothetical protein SDJN02_21020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 36/71 (50.70%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 16 PRTSRFSP----------------FLLNSNAFRSSNLLHHSVFVKKDLLLDSGFW----- 63
          PRTSRFSP                FLLNS+AFRSS ++ HSV VK D  LD+GFW     
Sbjct: 12 PRTSRFSPAFFFFFSLSFLRTPPAFLLNSSAFRSSKVVRHSVLVKNDPFLDAGFWIRFCH 71

The following BLAST results are available for this feature:
BLAST of Cla97C11G215510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015916.18.1e-0650.70hypothetical protein SDJN02_21020, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C11G215510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G215510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G215510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G215510.1Cla97C11G215510.1mRNA