Cla97C11G214420 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214420
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerase subunit beta'
Location	Cla97Chr11: 7801291 .. 7802776 (-)
RNA-Seq Expression	Cla97C11G214420
Synteny	Cla97C11G214420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCATGTACTTGGAAACCTCCTATTTGCCAATACAAATGTTGGCCGACTTCCACACCAGATATATCGTATAACCCTTTTTGTGTGTTGATAGAACATAATAGAATATTCATATTGCCCTCTGAAAGAAATAGAACTGTAAAACAAATTATTTTGATTCAAGAGGCCCTTAATGAAATTTCTTAATAGGAACTACACCCATTAAAAATTTCTTTGGTTAGCTAATATATTTTGTCTAATAACGTACAAATATATATGATCAGGGATACTTCCAGCAAGAAATATATCGACGAGTTAGTGTCGGGTTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTATATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGTGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

mRNA sequence

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Coding sequence (CDS)

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Protein sequence

MGDKLHRREGNSPDHQLRPLNDRSVIKKVGVQRQPGEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYLGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELLAFDPNAPRYFHPPSTGLSRPSSFHIPV

Homology

[Close]

BLAST of Cla97C11G214420 vs. NCBI nr
Match: YP_009633759.1 (RNA polymerase beta subunit [Schrebera orientalis] >YP_009641452.1 RNA polymerase beta subunit [Schrebera capuronii] >QBS48679.1 RNA polymerase beta subunit [Schrebera orientalis] >QBS54131.1 RNA polymerase beta subunit [Schrebera capuronii])

HSP 1 Score: 499.6 bits (1285), Expect = 2.0e-137
Identity = 244/249 (97.99%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 267 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 326

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 327 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPIVWE 446

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 447 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 506

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 507 PLSLEAQAE 515

[Close]

BLAST of Cla97C11G214420 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 498.8 bits (1283), Expect = 3.4e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 498.8 bits (1283), Expect = 3.4e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Cla97C11G214420 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 498.8 bits (1283), Expect = 3.4e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia])

HSP 1 Score: 498.8 bits (1283), Expect = 3.4e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 498.8 bits (1283), Expect = 4.4e-140
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot
Match: Q8HVY4 (DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 496.5 bits (1277), Expect = 2.2e-139
Identity = 242/249 (97.19%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 321

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDY 
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 381

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIREKEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIVWE 441

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 442 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 501

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 502 PLSLEAQAE 510

[Close]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 495.7 bits (1275), Expect = 3.8e-139
Identity = 242/249 (97.19%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQ E
Sbjct: 500 PLSLEAQVE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot
Match: Q3C1G8 (DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris OX=4096 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 495.7 bits (1275), Expect = 3.8e-139
Identity = 242/249 (97.19%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQ E
Sbjct: 500 PLSLEAQVE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot
Match: Q2MIJ6 (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum OX=147425 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 495.7 bits (1275), Expect = 3.8e-139
Identity = 242/249 (97.19%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQ E
Sbjct: 500 PLSLEAQVE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL
Match: A0A4D5YE54 (DNA-directed RNA polymerase subunit beta' OS=Schrebera capuronii OX=2491101 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 9.6e-138
Identity = 244/249 (97.99%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 267 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 326

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 327 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPIVWE 446

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 447 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 506

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 507 PLSLEAQAE 515

[Close]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL
Match: A0A4D5XYY3 (DNA-directed RNA polymerase subunit beta' OS=Schrebera orientalis OX=2563120 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 9.6e-138
Identity = 244/249 (97.99%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 267 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 326

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 327 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 386

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 387 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPIVWE 446

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 447 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 506

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 507 PLSLEAQAE 515

[Close]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.6e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.6e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.6e-137
Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-138
Identity = 239/249 (95.98%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Cla97C11G214420 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-28
Identity = 89/328 (27.13%), Postives = 148/328 (45.12%), Query Frame = 0


Query: 4   KLHRREGNSPDHQLRPLN-------DR--SVIKKV--------GVQRQPGEPEWMVLCLL 63
           K+ R++ + PD    P         DR  SV+K++        G   +   P+WM+L +L
Sbjct: 191 KIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVL 250

Query: 64  PVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQ 123
           P+ PP +RP + +D       D+      +I  N  L          P  ++    +L+Q
Sbjct: 251 PIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLK--RQEKNGAPAHIISEFTQLLQ 310

Query: 124 EAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYLGRSVIVVGP 183
             + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+  R+VI   P
Sbjct: 311 FHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 370

Query: 184 SLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE---- 243
           ++++   G+P  IA+ L        +    ++ L+    H       AK  IR+      
Sbjct: 371 TINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLD 430

Query: 244 ------------PIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLV 288
                        + +++ + +  G  +L NR P+LH++ I   +  ++      L+  V
Sbjct: 431 LRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSV 490

[Close]

BLAST of Cla97C11G214420 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-24
Identity = 76/275 (27.64%), Postives = 134/275 (48.73%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 98  VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 157
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV++ 
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 158 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 217
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 218 -------IGVAKSKIREKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRA 277
                  +G  + +I ++  I   + + + +G  +L NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 278 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 520

[Close]

BLAST of Cla97C11G214420 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-24
Identity = 76/275 (27.64%), Postives = 134/275 (48.73%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 98  VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 157
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV++ 
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 158 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 217
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 218 -------IGVAKSKIREKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRA 277
                  +G  + +I ++  I   + + + +G  +L NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 278 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 530

[Close]

BLAST of Cla97C11G214420 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-15
Identity = 68/267 (25.47%), Postives = 122/267 (45.69%), Query Frame = 0


Query: 43  LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVI-YRNNTLTDLLTTSRSTPGELV 102
           L   PV P   R    + Q +G +L+  +   +Y++++ +  NTL             ++
Sbjct: 220 LTSFPVTPNGYRVTEIVHQFNGARLIFDERTRIYKKLVGFEGNTL--------ELSSRVM 279

Query: 103 MCQE--KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRF-RETLLGKRVDY 162
            C +  +L  E V +  D+              Y+  SD  +    RF ++ LLGKR D+
Sbjct: 280 ECMQYSRLFSETVSSSKDSA-----------NPYQKKSDTPKLCGLRFMKDVLLGKRSDH 339

Query: 163 LGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREK 222
             R+V+V  PSL L+  G+P  IA  L  +  +    ++   ++     +   +  +R  
Sbjct: 340 TFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKEMHVRRG 399

Query: 223 EPIVW----------EILQEVMQGYPILLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLV 282
           + +V           +I + +M G  +L+NR P++H+  + A    IL     + L+P+ 
Sbjct: 400 DRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPIC 459

Query: 283 CKGFNADFDGDQMAVHVPLSLEAQAEL 287
           C  F  DFDGD +  +VP S++A+ EL
Sbjct: 460 CLPFRGDFDGDCLHGYVPQSIQAKVEL 467

The following BLAST results are available for this feature:

BLAST of Cla97C11G214420 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009633759.1	2.0e-137	97.99	RNA polymerase beta subunit [Schrebera orientalis] >YP_009641452.1 RNA polymeras...	[more]
AHM88912.1	3.4e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
ASY96794.1	3.4e-137	98.39	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
AHM88970.1	3.4e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_009560826.1	3.4e-137	98.39	RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Tr...	[more]

BLAST of Cla97C11G214420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	4.4e-140	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
Q8HVY4	2.2e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 S...	[more]
Q8S8Y0	3.8e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1...	[more]
Q3C1G8	3.8e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris OX=4096 GN=rpo...	[more]
Q2MIJ6	3.8e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum OX=147425 GN=...	[more]

BLAST of Cla97C11G214420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D5YE54	9.6e-138	97.99	DNA-directed RNA polymerase subunit beta' OS=Schrebera capuronii OX=2491101 GN=r...	[more]
A0A4D5XYY3	9.6e-138	97.99	DNA-directed RNA polymerase subunit beta' OS=Schrebera orientalis OX=2563120 GN=...	[more]
A0A218KG20	1.6e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6M3S6B8	1.6e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A1X9Q1T5	1.6e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]

BLAST of Cla97C11G214420 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	1.1e-138	95.98	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	3.6e-28	27.13	RNA polymerase II large subunit	[more]
AT5G60040.1	7.0e-24	27.64	nuclear RNA polymerase C1	[more]
AT5G60040.2	7.0e-24	27.64	nuclear RNA polymerase C1	[more]
AT1G63020.1	4.6e-15	25.47	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 39..305 e-value: 6.0E-120 score: 414.5
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 150..197 e-value: 7.1E-7 score: 29.6 coord: 204..287 e-value: 4.8E-25 score: 88.7
None	No IPR available	GENE3D	1.10.40.90		coord: 179..223 e-value: 1.4E-16 score: 62.3
None	No IPR available	GENE3D	2.40.40.20		coord: 138..289 e-value: 1.7E-43 score: 149.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 33..285
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 33..285
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 31..288
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 26..148 e-value: 4.6E-33 score: 114.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214420.1	Cla97C11G214420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding