Cla97C10G198750 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C10G198750
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	disease resistance protein RGA2-like
Location	Cla97Chr10: 28581653 .. 28583566 (+)
RNA-Seq Expression	Cla97C10G198750
Synteny	Cla97C10G198750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAAGGCTTCACGGACGGCTTCCCCGGCGGCGACCGTCATGATAACCTCCTCGGTTCTCGGATGTACTTCTTTAATTCGAACAACACCAAAAATCCAAGATTAAAATTTATTTAATAAACTCCTCAGATTATATTATATTAAAAAAAAAAAAAAAAATTCCGTATTCAAATTTGTTTTAATTGTATTAAGGTGATTGATATTTCGAAAATTCATCGGAAAATTTGAATAGCTTTTTGTGAACTTGATTTTGAGAAACAGAATTCCATAGACGGTTTATGTAGGCAAAAGGCAAATATGTAGTGTTGTGAAGATGAAGTCCAACATCTCTACACATGTTAGGGAATGCTAATTTTAACATATCCTTTGATTCCCAAAAAGAAAAAAAAAAAAAAAAAAGCCTTGGATTAGAGCTTGTTTTGATTGTCTAGGCAAAAAAAAAAAAATAAATAAATAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATTTTCAAAACGTCGCGTTAATTTTCTCAATTTGTCTGGTTTGATAGATATTCATACTCAAAATGTTTATACTAATGTCAAATTACTATACATTATGAACTAATAATTTCAAATTTTCCTAGTATATGATGGACCGAATTAGTTGTTAGAGTTTGTCATTAGAGATGATCGACAAAGTTGGTGGTTGAGGTTCTTACTTGTAGTGATTGTCAAATTTGGTTGCTGAAGGTGGTCATCGCCAAAATTATTGTTAGAGGTGGTTGGCAGAGTTGGCTAGGCTAGGATGTGTTTGTCTGTAGTCGCCGAAGGTAGTTGTTTTTAGAATTGGTCACCAACCATGGCTGGTTAACCCAACTCAACAACTCATGTTGGTGTGCCAAATATTGATAGACCAAACACCCACTTATTTATTTTGTTTTTTTGTTGAGATGAGAACATAAAGATAACTACCAGAGAACAACCATCTCTACTCACAAAGCTCCTCGTCAAGAAAGAGGGAACAAAAAAACTATATGGAAAAGCATCTTGAACAACCTCAGAAAGGCAAAGCCTACATTGACATGGAGAGATTTGTTCTTCAAAGGGATGTGAAAAAAATGTCCAAATTAAAAGCATTTGCTCTTTATTTCAAGATGTCACTGAGTATGGTGAAGTTAGTTTTAAGATGCATGATCTAGTACATGATATTGCTTCTGCAGTTTCAAATCATCAAAATAAGGAATCAAATCCAAATAATTGGAGTACAAAAAGTGGAAGAAAGTTGCGCACATTATTTTGCAACAATGAAGAGACTCTTCATAAGATTGGGGCCGACACTATTTCTTTGCGTGTTTTAGTACTGCATTCTTCTGGGATTATTAACTTGTCGAATATTATAGGCAAGTTGATACATTTCAATATGTTCTGAAACAGATCTTCATCTAGAATCAAGTTGATTCATCTTCAAATAGAAGACCTCAGGACCCTTGAAAAACCTCAAAGGTGCACTAGAGCTTACAAATCTCGAGAAAGCACAATATAAAGAGGAAGCTATGGCTGCGAAATTGAAGGAACTTTATATTCATACAATGCGTAATCTGGAGAAATGGGATGAATTGATCAGCTTAAATTTATTTGGATCTCTTCAAAAATTTCATATTATGGAATGTGATAAATTGACAAAATTGCCAAATGGGTTAGAAGGTTGCCGCTCCATTCAGTATTTGATGATTAGTCAGTGTCCTAATTTGATACTAAATGTTTGCACAACTTATATCATTTAAACTTTAGTGGTTTCAAAAGATCATTTCCAGAGGGATTAACTCACCTCACTGGCTTGAAAAAATTGATGATTACTGGATTATATGATGATGATGATGATGATGAGCCATGTGAGAATCCAACAACTTCAGCACTTCACTAA

mRNA sequence

ATGATCGAAGGCTTCACGGACGGCTTCCCCGGCGGCGACCGTCATGATAACCTCCTCGGTTCTCGGATTGATTGTCAAATTTGGTTGCTGAAGGTGGTCATCGCCAAAATTATTTCGCCGAAGGTAGTTGTTTTTAGAATTGGTCACCAACCATGGCTGGTTAACCCAACTCAACAACTCATGTTGAAGACCTCAGGACCCTTGAAAAACCTCAAAGGTGCACTAGAGCTTACAAATCTCGAGAAAGCACAATATAAAGAGGAAGCTATGGCTGCGAAATTGAAGGAACTTTATATTCATACAATGCGTAATCTGGAGAAATGGGATGAATTGATCAGCTTAAATTTATTTGGATCTCTTCAAAAATTTCATATTATGGAATGTGATAAATTGACAAAATTGCCAAATGGGTTAGAAGGTTGCCGCTCCATTCAATCATTTCCAGAGGGATTAACTCACCTCACTGGCTTGAAAAAATTGATGATTACTGGATTATATGATGATGATGATGATGATGAGCCATGTGAGAATCCAACAACTTCAGCACTTCACTAA

Coding sequence (CDS)

ATGATCGAAGGCTTCACGGACGGCTTCCCCGGCGGCGACCGTCATGATAACCTCCTCGGTTCTCGGATTGATTGTCAAATTTGGTTGCTGAAGGTGGTCATCGCCAAAATTATTTCGCCGAAGGTAGTTGTTTTTAGAATTGGTCACCAACCATGGCTGGTTAACCCAACTCAACAACTCATGTTGAAGACCTCAGGACCCTTGAAAAACCTCAAAGGTGCACTAGAGCTTACAAATCTCGAGAAAGCACAATATAAAGAGGAAGCTATGGCTGCGAAATTGAAGGAACTTTATATTCATACAATGCGTAATCTGGAGAAATGGGATGAATTGATCAGCTTAAATTTATTTGGATCTCTTCAAAAATTTCATATTATGGAATGTGATAAATTGACAAAATTGCCAAATGGGTTAGAAGGTTGCCGCTCCATTCAATCATTTCCAGAGGGATTAACTCACCTCACTGGCTTGAAAAAATTGATGATTACTGGATTATATGATGATGATGATGATGATGAGCCATGTGAGAATCCAACAACTTCAGCACTTCACTAA

Protein sequence

MIEGFTDGFPGGDRHDNLLGSRIDCQIWLLKVVIAKIISPKVVVFRIGHQPWLVNPTQQLMLKTSGPLKNLKGALELTNLEKAQYKEEAMAAKLKELYIHTMRNLEKWDELISLNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQSFPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTTSALH

Homology

[Close]

BLAST of Cla97C10G198750 vs. NCBI nr
Match: XP_038904500.1 (disease resistance protein RGA2-like, partial [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 6.8e-13
Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELISLNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQ------- 152
           +LK+ YI  M+NLEKWDELI+ NLFGSL+ F I+ CDKLTKLP G+E C+SI+       
Sbjct: 265 QLKKFYIDGMKNLEKWDELITPNLFGSLKNFSILGCDKLTKLPGGIESCQSIEYLSIHQC 324

Query: 153 ----------------------SFPEGLTHLTGLKKLMITG 165
                                   PEGL  LT LK+L+I+G
Sbjct: 325 PNLMLNVQNLHNLYRLDINGMKRLPEGLGGLTNLKELVISG 365

[Close]

BLAST of Cla97C10G198750 vs. NCBI nr
Match: XP_038877689.1 (putative disease resistance protein RGA3 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-10
Identity = 53/148 (35.81%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 60  LMLKTSGPLKNLKGAL------------ELTNLEKAQYKEEAMAAKLKELYIHTMRNLEK 119
           +ML   G L NLK  L            E   ++  Q +      +LKEL+I+ M+ LE+
Sbjct: 767 VMLPMLGQLPNLKKLLIRSMVSVKSIGNEFYGIDSNQLRNSFAFPQLKELHIYGMKKLEQ 826

Query: 120 WDE--LISLNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQ-------------------- 165
           WDE  ++S NLFG L+K HI  C +L KLP+GLEGC SI+                    
Sbjct: 827 WDESTVVSSNLFGCLKKLHISGCGQLAKLPSGLEGCHSIEYLGIFQCSNLMLNVQNFYNL 886

[Close]

BLAST of Cla97C10G198750 vs. NCBI nr
Match: XP_038877687.1 (putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 putative disease resistance protein RGA1 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELISLNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQ 146
           +L+ELYI  M+ LE+WDE  + NLFGSL+K  ++ CDKLTKLP+G EGC SI+
Sbjct: 815 QLEELYIDGMKKLEQWDEFTTSNLFGSLKKLSVLGCDKLTKLPSGFEGCHSIE 867

[Close]

BLAST of Cla97C10G198750 vs. NCBI nr
Match: XP_008453965.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-07
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELIS---LNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQS--- 152
           KLK+  +  M NLE+W+  ++    N FGSLQ   +  C KLTKLPNGLE C+S++    
Sbjct: 804 KLKKFDLGWMCNLEQWELEVANHESNHFGSLQTLKLDRCGKLTKLPNGLECCKSVREVII 863

Query: 153 --------------------------FPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTT 185
                                      P+GL HL  LK +MITG  +D D       P+ 
Sbjct: 864 SNCPNLTLNVEKMHSLSVLLIDGLKFLPKGLAHLPNLKTMMITGCIEDYDYSPFLNLPSL 923

[Close]

BLAST of Cla97C10G198750 vs. NCBI nr
Match: KAA0044614.1 (disease resistance protein RGA2-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-07
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELIS---LNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQS--- 152
           KLK+  +  M NLE+W+  ++    N FGSLQ   +  C KLTKLPNGLE C+S++    
Sbjct: 804 KLKKFDLGWMCNLEQWELEVANHESNHFGSLQTLKLDRCGKLTKLPNGLECCKSVREVII 863

Query: 153 --------------------------FPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTT 185
                                      P+GL HL  LK +MITG  +D D       P+ 
Sbjct: 864 SSCPNLTLNVEKMHSLSVLLIDGLKFLPKGLAHLPNLKTMMITGCIEDYDYSPFLNLPSL 923

[Close]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL
Match: A0A5D3CZM0 (Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELIS---LNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQS--- 152
           KLK+  +  M NLE+W+  ++    N FGSLQ   +  C KLTKLPNGLE C+S++    
Sbjct: 763 KLKKFDLGWMCNLEQWELEVANHESNHFGSLQTLKLDRCGKLTKLPNGLECCKSVREVII 822

Query: 153 --------------------------FPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTT 185
                                      P+GL HL  LK +MITG  +D D       P+ 
Sbjct: 823 SNCPNLTLNVEKMHSLSVLLIDGLKFLPKGLAHLPNLKTMMITGCIEDYDYSPFLNLPSL 882

[Close]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL
Match: A0A5A7TNC1 (Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003650 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELIS---LNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQS--- 152
           KLK+  +  M NLE+W+  ++    N FGSLQ   +  C KLTKLPNGLE C+S++    
Sbjct: 804 KLKKFDLGWMCNLEQWELEVANHESNHFGSLQTLKLDRCGKLTKLPNGLECCKSVREVII 863

Query: 153 --------------------------FPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTT 185
                                      P+GL HL  LK +MITG  +D D       P+ 
Sbjct: 864 SSCPNLTLNVEKMHSLSVLLIDGLKFLPKGLAHLPNLKTMMITGCIEDYDYSPFLNLPSL 923

[Close]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL
Match: A0A1S3BXM2 (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103494527 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 93  KLKELYIHTMRNLEKWDELIS---LNLFGSLQKFHIMECDKLTKLPNGLEGCRSIQS--- 152
           KLK+  +  M NLE+W+  ++    N FGSLQ   +  C KLTKLPNGLE C+S++    
Sbjct: 804 KLKKFDLGWMCNLEQWELEVANHESNHFGSLQTLKLDRCGKLTKLPNGLECCKSVREVII 863

Query: 153 --------------------------FPEGLTHLTGLKKLMITGLYDDDDDDEPCENPTT 185
                                      P+GL HL  LK +MITG  +D D       P+ 
Sbjct: 864 SNCPNLTLNVEKMHSLSVLLIDGLKFLPKGLAHLPNLKTMMITGCIEDYDYSPFLNLPSL 923

[Close]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL
Match: A0A068VIQ0 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00008227001 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 45/111 (40.54%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 66  GPLKNLKGALELTNLEKAQYKEEAMAAKLKELYIHTMRNLE-KWDELISLNLFGSLQKFH 125
           G LKNLKG LE+ NLE  + KE A  AKL E     +  LE KW +L+ L  F SL++  
Sbjct: 456 GSLKNLKGKLEIRNLELVKDKEGAEEAKLSEK--ANLFGLELKWAQLLPLQNFASLKELT 515

Query: 126 IMECDKLTKLPNG-LEGCRSIQ-----------SFPEGLTHLTGLKKLMIT 164
           I  CD LT LP   L  C S+Q           SFP  L     L +L ++
Sbjct: 516 IWSCDGLTNLPGDMLHSCASLQKLEVSWCGNLISFPLDLQQTPSLSELALS 564

[Close]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL
Match: A0A0A0LBV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 31  KVVIAKIISPKVVVFRIGHQPWLVNPTQQLMLKTSGPLKNLKGALELTNLEK-------- 90
           KV+   I    +V  R+GH        +  +L   G L NLK  LE+  +E         
Sbjct: 748 KVLPTGIFVENLVKIRLGHF------ERCEVLPMLGQLPNLK-ELEIMYMESVRSIGNEF 807

Query: 91  ----AQYKEEAMAAKLKELYIHTMRNLEKWDE---LISLNLFGSLQKFHIMECDKLTKLP 146
               + ++      +LK+L I+ M NLE+WDE   ++  NLFG L++  I  C+ L KLP
Sbjct: 808 YGVDSSHQNSVAFPQLKKLSIYEMMNLEQWDEATVVLESNLFGCLKEVRIRRCNPLAKLP 867

The following BLAST results are available for this feature:

BLAST of Cla97C10G198750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904500.1	6.8e-13	45.54	disease resistance protein RGA2-like, partial [Benincasa hispida]	[more]
XP_038877689.1	1.9e-10	35.81	putative disease resistance protein RGA3 [Benincasa hispida]	[more]
XP_038877687.1	1.2e-09	60.38	putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 put...	[more]
XP_008453965.1	9.6e-07	33.87	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]
KAA0044614.1	9.6e-07	33.87	disease resistance protein RGA2-like [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C10G198750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZM0	4.6e-07	33.87	Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TNC1	4.6e-07	33.87	Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BXM2	4.6e-07	33.87	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103494527 PE=...	[more]
A0A068VIQ0	3.9e-06	40.54	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00008227001 PE=4 ...	[more]
A0A0A0LBV0	3.9e-06	33.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=4 SV=1	[more]

BLAST of Cla97C10G198750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..95
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 94..164
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 61..167 e-value: 1.1E-7 score: 32.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G198750.2	Cla97C10G198750.2	mRNA