Cla97C10G194180 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C10G194180
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RNase H domain-containing protein
Location	Cla97Chr10: 23386031 .. 23387053 (+)
RNA-Seq Expression	Cla97C10G194180
Synteny	Cla97C10G194180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTTGCTGATTTCAACTCTTCCTTTGTGGACAGGTGGGTTTCCATGAATCAAAACTGTAAAAGAGATGAAATTGGTTTATATGCCATTTGCTGCCGGGCCTTATGGGAAGATAGAAACAAATTTCTCTATAGTTTACCTGTTCCTAGTATTGAAGTGAAGAGCCGCTGGATTGTGACCTATTTCACAATATTCCGCGCGGCCCTAAATCTCAAGGAATTGAGACTCCCAATGTTACAAGTGAATACTAAATAAAGCTAAAAAATTAAGATAATATAAGATAAGATAGAATAAAATAAGAAAGGATTTGATCTTGTTTAGATTAGGAAAATCTAATATCCTAATTTTAGATTTAAGATAAATTCTAGATCAAATTTATTATAAATACACCGTAATAGCTACATCAAAGATAACTTCTAACTTCTAACTTTTTTTCTATTATCTGACTTAGACATGGAGTCATTTTTTTTTGTTTTATAGGTCATATTTTCCTTAAATTACAAATTTACCGTTGATGGCCATAGGAGCAATGCCCAATTTATTCAATTCAGATCCAAGAAGCTATTTGAAGATGATGAACTCGGTGATGGGCTTCCAAAGCTGAGTGTCGATACAGCCTGGAAAAATGATCCTCTTATGTCGGAATGGAGTGCTGGAATTCAGGATGAAAGAAATATCTTACAAGCTGTGCTGATAGACGCAAGGATGATTGCTTTGAAGCCCCCGTTGGCGGAGTTGTTTGCGATTCTGGAAGGACTCCGGCTGGCTCCTAGACCAAACTTTTCCAAAATTCAAGTGGAATCCGATTACCTTGAAGCAATGAAACTGATCAACAAATTGACAACATCATTCAATGAAAATCGTCGTTGCTGGCTCTCAGAGATTTGGGAGATCTTAAAGGATTTTGATGTAGCTAATGTGATTCATGTAAACAAAAAGTGTAATTGGTTAGCCAACACTTTAGCAAGGAGGGCTAGAACGAGTACTTGTAGTTATGTTATTTCCCTTCGTGGATGTTGA

mRNA sequence

ATGTTCTTTGCTGATTTCAACTCTTCCTTTGTGGACAGGTGGGTTTCCATGAATCAAAACTGTAAAAGAGATGAAATTGGTTTATATGCCATTTGCTGCCGGGCCTTATGGGAAGATAGAAACAAATTTCTCTATAGTTTACCTGTTCCTAGTATTGAAGTGAAGAGCCGCTGGATTGTGACCTATTTCACAATATTCCGCGCGGCCCTAAATCTCAAGGAATTGAGACTCCCAATGTTACAAGTCATATTTTCCTTAAATTACAAATTTACCGTTGATGGCCATAGGAGCAATGCCCAATTTATTCAATTCAGATCCAAGAAGCTATTTGAAGATGATGAACTCGGTGATGGGCTTCCAAAGCTGAGTGTCGATACAGCCTGGAAAAATGATCCTCTTATGTCGGAATGGAGTGCTGGAATTCAGGATGAAAGAAATATCTTACAAGCTGTGCTGATAGACGCAAGGATGATTGCTTTGAAGCCCCCGTTGGCGGAGTTGTTTGCGATTCTGGAAGGACTCCGGCTGGCTCCTAGACCAAACTTTTCCAAAATTCAAGTGGAATCCGATTACCTTGAAGCAATGAAACTGATCAACAAATTGACAACATCATTCAATGAAAATCGTCGTTGCTGGCTCTCAGAGATTTGGGAGATCTTAAAGGATTTTGATGTAGCTAATGTGATTCATGTAAACAAAAAGTGTAATTGGTTAGCCAACACTTTAGCAAGGAGGGCTAGAACGAGTACTTGTAGTTATGTTATTTCCCTTCGTGGATGTTGA

Coding sequence (CDS)

ATGTTCTTTGCTGATTTCAACTCTTCCTTTGTGGACAGGTGGGTTTCCATGAATCAAAACTGTAAAAGAGATGAAATTGGTTTATATGCCATTTGCTGCCGGGCCTTATGGGAAGATAGAAACAAATTTCTCTATAGTTTACCTGTTCCTAGTATTGAAGTGAAGAGCCGCTGGATTGTGACCTATTTCACAATATTCCGCGCGGCCCTAAATCTCAAGGAATTGAGACTCCCAATGTTACAAGTCATATTTTCCTTAAATTACAAATTTACCGTTGATGGCCATAGGAGCAATGCCCAATTTATTCAATTCAGATCCAAGAAGCTATTTGAAGATGATGAACTCGGTGATGGGCTTCCAAAGCTGAGTGTCGATACAGCCTGGAAAAATGATCCTCTTATGTCGGAATGGAGTGCTGGAATTCAGGATGAAAGAAATATCTTACAAGCTGTGCTGATAGACGCAAGGATGATTGCTTTGAAGCCCCCGTTGGCGGAGTTGTTTGCGATTCTGGAAGGACTCCGGCTGGCTCCTAGACCAAACTTTTCCAAAATTCAAGTGGAATCCGATTACCTTGAAGCAATGAAACTGATCAACAAATTGACAACATCATTCAATGAAAATCGTCGTTGCTGGCTCTCAGAGATTTGGGAGATCTTAAAGGATTTTGATGTAGCTAATGTGATTCATGTAAACAAAAAGTGTAATTGGTTAGCCAACACTTTAGCAAGGAGGGCTAGAACGAGTACTTGTAGTTATGTTATTTCCCTTCGTGGATGTTGA

Protein sequence

MFFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTYFTIFRAALNLKELRLPMLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPKLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLARRARTSTCSYVISLRGC

Homology

[Close]

BLAST of Cla97C10G194180 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-15
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 121 KLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRP 180
           KL+VD AWK  P  S +SA I+D +  L+ V I +      PPLAE F +L+GLRL  + 
Sbjct: 65  KLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFVVLQGLRLTSKM 124

Query: 181 NFSKIQVESDYLEAMKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLAN 240
           NF KI V+SD   A+ L  K+  S + + R WL EIWEI   F   N  ++ +  N LA+
Sbjct: 125 NFKKIIVKSDCSGAIDLFLKILIS-DSSVRVWLEEIWEISIVFYPINFAYIPRNINKLAD 184

Query: 241 TLARRAR 248
            +A+R R
Sbjct: 185 IVAKRTR 190

[Close]

BLAST of Cla97C10G194180 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-11
Identity = 68/247 (27.53%), Postives = 107/247 (43.32%), Query Frame = 0


Query: 4    ADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTYF 63
            A+ N SF++ W S+ +  +  ++ L AI    +W DRN  ++   V  +E K  W+  + 
Sbjct: 1209 AEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFL 1268

Query: 64   TIFRAALNLKELRLPMLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPKLS 123
                             Q   S     T   HR   Q+ +  S              KL+
Sbjct: 1269 DSHS-------------QAQMSNYSPRTQSNHRPVVQYWRPSSSVSL----------KLN 1328

Query: 124  VDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFS 183
             D A +     + +   I+D    L A         L P LAE+  ILEGL+ A   NF+
Sbjct: 1329 TDAACRG--ASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFT 1388

Query: 184  KIQVESDYLEAMKLI-NKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTL 243
             ++VESD L A++LI N++ T  +E    W+ EI  +   F   +  H +++CN  A+ L
Sbjct: 1389 HLEVESDSLLAIQLIRNEIHTRGDEQN--WVMEIQALTCCFAFISFSHSSRQCNRAAHGL 1428

Query: 244  ARRARTS 250
            A+   TS
Sbjct: 1449 AKWGITS 1428

[Close]

BLAST of Cla97C10G194180 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 9.3e-08
Identity = 62/240 (25.83%), Postives = 104/240 (43.33%), Query Frame = 0


Query: 19  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTYFTIFRAALNLKELRLP 78
           QN    E+ L  I C ALW DR+  +    +P   +K  WI+ Y          +E+R+ 
Sbjct: 2   QNLSTSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKY---------AEEVRM- 61

Query: 79  MLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPKLSVDTAWKNDPLMSEWS 138
                     K+     R   +  ++R         LG G+ K++ D A      +SE  
Sbjct: 62  ----------KYHNGMKRRIPRVNEWR-------PPLG-GVVKMNTDAA------VSEEG 121

Query: 139 AGI----QDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEA 198
           +G+    ++    +   ++D  M+   P LA++ AI EGL LA R    ++ VE+D LEA
Sbjct: 122 SGVGVLLREGNAEIVGAMVDFHMVK-TPLLAKILAIREGLSLATRLGVHRVVVETDSLEA 181

Query: 199 MKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLARRARTSTCSYV 255
           + LI    + +      W+ +I    +DF      HV ++ N +A  L R   +  C ++
Sbjct: 182 LNLIGD-KSPWKGEAVSWVEDIRAFARDFQEICFQHVFRESNAVAYHLGRETISLRCGFL 205

[Close]

BLAST of Cla97C10G194180 vs. NCBI nr
Match: OMO99423.1 (hypothetical protein CCACVL1_03816 [Corchorus capsularis])

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-07
Identity = 38/138 (27.54%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 118 GLPKLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLA 177
           G+ K++ D A+    + +  +A ++D    + + ++D  +       A +FAI  G+ +A
Sbjct: 236 GVLKVNTDAAFDRARVGTGLAAVLRDSEGRVLSTVVDCNLFVKDVLYAGVFAIRLGVNMA 295

Query: 178 PRPNFSKIQVESDYLEAMKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNW 237
                S+  + SD L A+  IN+L T  N    C + EIWE+   F+    +HV ++ N+
Sbjct: 296 RADGISRCIILSDCLMAIFAINRL-TKCNWEGDCLIEEIWELANFFESITFVHVKREANY 355

Query: 238 LANTLARRARTSTCSYVI 256
            A+T+A+ A  +  +YV+
Sbjct: 356 CAHTVAKFAALNVATYVL 372

[Close]

BLAST of Cla97C10G194180 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-06
Identity = 39/129 (30.23%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 121 KLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAP 180
           KL+ + AW+ D         ++DE+   + +    R+I  +  +   E+ AI EGLR   
Sbjct: 88  KLNTNAAWRADTNTGGIGWILRDEKG--EVIKASCRIIRAERNITYLEVMAICEGLRAIR 147

Query: 181 RPNFSKIQVESDYLEAMKLINKLTTSFNENRRCW-LSEIWEILKDFDVANVIHVNKKCNW 240
           + +   I +ESD LEA+ L+++     ++    W L EIW+++KD ++ ++ H++++ N 
Sbjct: 148 QEHCRPIHLESDSLEAIHLLHRQCQ--DQTEIIWLLEEIWQMMKDMEIVSMRHISREANK 207

Query: 241 LANTLARRA 247
           +A+ LARRA
Sbjct: 208 VAHGLARRA 212

[Close]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.8e-12
Identity = 68/247 (27.53%), Postives = 107/247 (43.32%), Query Frame = 0


Query: 4    ADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTYF 63
            A+ N SF++ W S+ +  +  ++ L AI    +W DRN  ++   V  +E K  W+  + 
Sbjct: 1209 AEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFL 1268

Query: 64   TIFRAALNLKELRLPMLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPKLS 123
                             Q   S     T   HR   Q+ +  S              KL+
Sbjct: 1269 DSHS-------------QAQMSNYSPRTQSNHRPVVQYWRPSSSVSL----------KLN 1328

Query: 124  VDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFS 183
             D A +     + +   I+D    L A         L P LAE+  ILEGL+ A   NF+
Sbjct: 1329 TDAACRG--ASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFT 1388

Query: 184  KIQVESDYLEAMKLI-NKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTL 243
             ++VESD L A++LI N++ T  +E    W+ EI  +   F   +  H +++CN  A+ L
Sbjct: 1389 HLEVESDSLLAIQLIRNEIHTRGDEQN--WVMEIQALTCCFAFISFSHSSRQCNRAAHGL 1428

Query: 244  ARRARTS 250
            A+   TS
Sbjct: 1449 AKWGITS 1428

[Close]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-08
Identity = 62/240 (25.83%), Postives = 104/240 (43.33%), Query Frame = 0


Query: 19  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTYFTIFRAALNLKELRLP 78
           QN    E+ L  I C ALW DR+  +    +P   +K  WI+ Y          +E+R+ 
Sbjct: 2   QNLSTSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKY---------AEEVRM- 61

Query: 79  MLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPKLSVDTAWKNDPLMSEWS 138
                     K+     R   +  ++R         LG G+ K++ D A      +SE  
Sbjct: 62  ----------KYHNGMKRRIPRVNEWR-------PPLG-GVVKMNTDAA------VSEEG 121

Query: 139 AGI----QDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEA 198
           +G+    ++    +   ++D  M+   P LA++ AI EGL LA R    ++ VE+D LEA
Sbjct: 122 SGVGVLLREGNAEIVGAMVDFHMVK-TPLLAKILAIREGLSLATRLGVHRVVVETDSLEA 181

Query: 199 MKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLARRARTSTCSYV 255
           + LI    + +      W+ +I    +DF      HV ++ N +A  L R   +  C ++
Sbjct: 182 LNLIGD-KSPWKGEAVSWVEDIRAFARDFQEICFQHVFRESNAVAYHLGRETISLRCGFL 205

[Close]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL
Match: A0A1R3JX53 (RNase H domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03816 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 38/138 (27.54%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 118 GLPKLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLA 177
           G+ K++ D A+    + +  +A ++D    + + ++D  +       A +FAI  G+ +A
Sbjct: 236 GVLKVNTDAAFDRARVGTGLAAVLRDSEGRVLSTVVDCNLFVKDVLYAGVFAIRLGVNMA 295

Query: 178 PRPNFSKIQVESDYLEAMKLINKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNW 237
                S+  + SD L A+  IN+L T  N    C + EIWE+   F+    +HV ++ N+
Sbjct: 296 RADGISRCIILSDCLMAIFAINRL-TKCNWEGDCLIEEIWELANFFESITFVHVKREANY 355

Query: 238 LANTLARRARTSTCSYVI 256
            A+T+A+ A  +  +YV+
Sbjct: 356 CAHTVAKFAALNVATYVL 372

[Close]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 39/129 (30.23%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 121 KLSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAP 180
           KL+ + AW+ D         ++DE+   + +    R+I  +  +   E+ AI EGLR   
Sbjct: 88  KLNTNAAWRADTNTGGIGWILRDEKG--EVIKASCRIIRAERNITYLEVMAICEGLRAIR 147

Query: 181 RPNFSKIQVESDYLEAMKLINKLTTSFNENRRCW-LSEIWEILKDFDVANVIHVNKKCNW 240
           + +   I +ESD LEA+ L+++     ++    W L EIW+++KD ++ ++ H++++ N 
Sbjct: 148 QEHCRPIHLESDSLEAIHLLHRQCQ--DQTEIIWLLEEIWQMMKDMEIVSMRHISREANK 207

Query: 241 LANTLARRA 247
           +A+ LARRA
Sbjct: 208 VAHGLARRA 212

[Close]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL
Match: A0A6J1CK80 (uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012047 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.4e-06
Identity = 53/178 (29.78%), Postives = 73/178 (41.01%), Query Frame = 0


Query: 5   DFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIVTY-- 64
           D N SF+DRW    +N   +E+ L  I C A W DRN+    + V  +  +S WI  Y  
Sbjct: 7   DCNCSFIDRWALWRENLTLEELLLAGIICWANWNDRNQRNNGIDVADVHTESDWITNYAM 66

Query: 65  -FTIFRAALNLKELRLPMLQVIFSLNYKFTVDGHRSNAQFIQFRSKKLFEDDELGDGLPK 124
                R   N  +  LP L  I+    K TV                            K
Sbjct: 67  ELLTRRRKTNEAQKNLPCL-AIWKPPSKGTV----------------------------K 126

Query: 125 LSVDTAWKNDPLMSEWSAGIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPR 180
           L+VD A+            ++D+RN + A LI +  +   P LAE+ AI E +RLA R
Sbjct: 127 LNVDAAFDVRNQRGGVGVLVRDDRNSILAALISSHNVN-SPLLAEICAIREAVRLAER 154

The following BLAST results are available for this feature:

BLAST of Cla97C10G194180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902513.1	6.0e-15	42.52	uncharacterized protein LOC120089172 [Benincasa hispida]	[more]
XP_022158377.1	1.8e-11	27.53	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022158489.1	9.3e-08	25.83	uncharacterized protein LOC111024968 [Momordica charantia]	[more]
OMO99423.1	7.9e-07	27.54	hypothetical protein CCACVL1_03816 [Corchorus capsularis]	[more]
XP_022143535.1	3.9e-06	30.23	uncharacterized protein LOC111013412 [Momordica charantia]	[more]

BLAST of Cla97C10G194180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	8.8e-12	27.53	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZK3	4.5e-08	25.83	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A1R3JX53	3.8e-07	27.54	RNase H domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_0...	[more]
A0A6J1CP26	1.9e-06	30.23	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CK80	9.4e-06	29.78	uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Cla97C10G194180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 121..247 e-value: 5.5E-11 score: 44.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 160..246 e-value: 1.1E-15 score: 57.6
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 122..244 e-value: 2.66281E-11 score: 57.324
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 121..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G194180.1	Cla97C10G194180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity