Cla97C08G161500 (gene) Watermelon (97103) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGGTAATTCGTAACATATTTATGTTCATAAAAATTTGTCCATTCAAGTGGTGCCATGGGATTTGAAATGAAGTAGTTTTTCTGAGGATGAGTTTGAGTTGTTGAACCTCACAAGTCACAAGGGCATTGTTTTTTCTTGGCAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGTGAATGAAAATTCTCTAATAATCCAACGCATCACTTTACTTTTATAGTGACAGATAGAGAGATTTGATTTATTTTACGTCTCCAGCCTCTCTGATGAATTGAGCAGCCTACATCCCTGAAATGCCTTTGAGCTTAAGAGATGCTGTAGAGAGAAACTCGCGTTCTCAGGAAAATAATGCACCGCTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTACCAGTCTCACTCCTATGCTATCAAACCGTGCAGATGTCAAACAAGATAATTGTTATGACAAATTTACTACCTCCATTAGATGATGACGTTGGAGTGCAATATCTTTCTATATGTGCCTACTTTTGCTTAACAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA MSYLHTDVGRALSFQAGFLIWPHVSCISCFPASGTRTSADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYVKDLCYSHVSLNVTECKRLTTHKLRLWVSDFNTLELLSSNRLLDRMQFQNMHFQNYLLGVI Homology
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885609.1 (uncharacterized protein LOC120075930 isoform X2 [Benincasa hispida]) HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26 Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885608.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X1 [Benincasa hispida]) HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26 Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038886143.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like [Benincasa hispida]) HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08 Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_022131407.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Momordica charantia]) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07 Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885610.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X3 [Benincasa hispida]) HSP 1 Score: 65.5 bits (158), Expect = 4.0e-07 Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy Swiss-Prot
Match: Q45GQ7 (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1BQX6 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Momordica charantia OX=3673 GN=LOC111004631 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08 Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1KPK1 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07 Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1GK72 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06 Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A2I4DDJ4 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Juglans regia OX=51240 GN=LOC108979080 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05 Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0
BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6P4CZH2 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arachis duranensis OX=130453 GN=LOC107481188 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05 Identity = 36/76 (47.37%), Postives = 40/76 (52.63%), Query Frame = 0
BLAST of Cla97C08G161500 vs. TAIR 10
Match: AT1G10710.1 (poor homologous synapsis 1 ) HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Cla97C08G161500 vs. TAIR 10
Match: AT1G10710.2 (poor homologous synapsis 1 ) HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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