Cla97C08G161500 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G161500
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionprotein POOR HOMOLOGOUS SYNAPSIS 1
LocationCla97Chr08: 27961722 .. 27962614 (+)
RNA-Seq ExpressionCla97C08G161500
SyntenyCla97C08G161500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGGTAATTCGTAACATATTTATGTTCATAAAAATTTGTCCATTCAAGTGGTGCCATGGGATTTGAAATGAAGTAGTTTTTCTGAGGATGAGTTTGAGTTGTTGAACCTCACAAGTCACAAGGGCATTGTTTTTTCTTGGCAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGTGAATGAAAATTCTCTAATAATCCAACGCATCACTTTACTTTTATAGTGACAGATAGAGAGATTTGATTTATTTTACGTCTCCAGCCTCTCTGATGAATTGAGCAGCCTACATCCCTGAAATGCCTTTGAGCTTAAGAGATGCTGTAGAGAGAAACTCGCGTTCTCAGGAAAATAATGCACCGCTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTACCAGTCTCACTCCTATGCTATCAAACCGTGCAGATGTCAAACAAGATAATTGTTATGACAAATTTACTACCTCCATTAGATGATGACGTTGGAGTGCAATATCTTTCTATATGTGCCTACTTTTGCTTAACAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA

mRNA sequence

ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA

Coding sequence (CDS)

ATGTCTTATTTGCATACTGATGTAGGAAGAGCACTATCTTTCCAAGCTGGATTTCTTATATGGCCTCATGTGTCCTGTATCTCTTGTTTTCCAGCCAGTGGCACCAGAACTTCAGCTGATGAGATCCAAAAGTTTGCCGTAAGATTTTCAACATCGAAGGAAACTGATTCATTTGTGAACATTCTCAAGGTATTTGATATGAATTCCTTTTATGTTAAGGATTTATGCTATTCTCATGTTTCATTAAACGTCACAGAATGCAAGAGATTGACAACCCATAAGCTACGACTTTGGGTCTCAGATTTCAACACTCTTGAGTTATTATCTTCAAATAGACTGCTCGATAGGATGCAATTCCAGAATATGCATTTCCAAAATTACTTATTGGGTGTGATTTGA

Protein sequence

MSYLHTDVGRALSFQAGFLIWPHVSCISCFPASGTRTSADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYVKDLCYSHVSLNVTECKRLTTHKLRLWVSDFNTLELLSSNRLLDRMQFQNMHFQNYLLGVI
Homology
BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885609.1 (uncharacterized protein LOC120075930 isoform X2 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 20  IWPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYV 79
           +WP VSCIS FP  GTRT       S DEIQ+FA+RFSTSKET+S VNILKVF+MNSFYV
Sbjct: 45  LWPQVSCISGFPPRGTRTIFESYRDSTDEIQQFAIRFSTSKETNSVVNILKVFNMNSFYV 104

Query: 80  KDLCYSHVSLNVTECKRLTTHKLRLWVSDFNTL 106
           K LCYSHVS NV +CKR TTHK+RL VSDFN L
Sbjct: 105 KVLCYSHVSRNVEKCKRCTTHKVRLGVSDFNRL 137

BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885608.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 67/93 (72.04%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 20  IWPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYV 79
           +WP VSCIS FP  GTRT       S DEIQ+FA+RFSTSKET+S VNILKVF+MNSFYV
Sbjct: 47  LWPQVSCISGFPPRGTRTIFESYRDSTDEIQQFAIRFSTSKETNSVVNILKVFNMNSFYV 106

Query: 80  KDLCYSHVSLNVTECKRLTTHKLRLWVSDFNTL 106
           K LCYSHVS NV +CKR TTHK+RL VSDFN L
Sbjct: 107 KVLCYSHVSRNVEKCKRCTTHKVRLGVSDFNRL 139

BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038886143.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP VSCIS FPA GTRT       SADEIQKFA+RFSTS ETDSFVNI+K
Sbjct: 103 WPQVSCISGFPARGTRTIFGSYRDSADEIQKFALRFSTSYETDSFVNIIK 152

BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_022131407.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYVK 80
           WP VSCIS FPA GTRT       SA+EIQKFA+RFST+ ETDSFVNILK    ++  ++
Sbjct: 107 WPQVSCISGFPARGTRTIFGSYRDSANEIQKFALRFSTAYETDSFVNILKEMAEDARDIQ 166

Query: 81  DLCYSHVSLNVTECKRLTTHKLRLWVSDFNTLELLSSNRLLDRM 118
            +     S       R+TT             ELLSSNR  D +
Sbjct: 167 PISSEFGS-------RITTQS-----------ELLSSNRPSDSL 192

BLAST of Cla97C08G161500 vs. NCBI nr
Match: XP_038885610.1 (protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-07
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 20 IWPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
          +WP VSCIS FP  GTRT       S DEIQ+FA+RFSTSKET+S VNILK
Sbjct: 47 LWPQVSCISGFPPRGTRTIFESYRDSTDEIQQFAIRFSTSKETNSVVNILK 97

BLAST of Cla97C08G161500 vs. ExPASy Swiss-Prot
Match: Q45GQ7 (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP +SC+S FP+ G+R        SA++IQKFA+RFST      FV  LK
Sbjct: 103 WPQMSCVSGFPSRGSRAIFVTYMDSANQIQKFALRFSTCDAALEFVEALK 152

BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1BQX6 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Momordica charantia OX=3673 GN=LOC111004631 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILKVFDMNSFYVK 80
           WP VSCIS FPA GTRT       SA+EIQKFA+RFST+ ETDSFVNILK    ++  ++
Sbjct: 107 WPQVSCISGFPARGTRTIFGSYRDSANEIQKFALRFSTAYETDSFVNILKEMAEDARDIQ 166

Query: 81  DLCYSHVSLNVTECKRLTTHKLRLWVSDFNTLELLSSNRLLDRM 118
            +     S       R+TT             ELLSSNR  D +
Sbjct: 167 PISSEFGS-------RITTQS-----------ELLSSNRPSDSL 192

BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1KPK1 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP + CIS FPA GTRT       SADEIQKFA+RFSTS E DSFV+ILK
Sbjct: 111 WPQMCCISGFPARGTRTMFGSYRDSADEIQKFALRFSTSCEIDSFVSILK 160

BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6J1GK72 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP + CIS FP  GTRT       SADEIQKFA+RFSTS E DSFV+ILK
Sbjct: 118 WPQMCCISGFPPRGTRTIFGSYRDSADEIQKFALRFSTSCEIDSFVSILK 167

BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A2I4DDJ4 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Juglans regia OX=51240 GN=LOC108979080 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-----SADEIQKFAVRFSTSKETDSFVNILK 64
           WPHVSC+S FPA GTR+        EIQKFA+RFST+ ET+ F+N LK
Sbjct: 103 WPHVSCVSGFPARGTRSVFVSYGDQEIQKFALRFSTTCETEIFINALK 150

BLAST of Cla97C08G161500 vs. ExPASy TrEMBL
Match: A0A6P4CZH2 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arachis duranensis OX=130453 GN=LOC107481188 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.3e-05
Identity = 36/76 (47.37%), Postives = 40/76 (52.63%), Query Frame = 0

Query: 5   HTDVGRALSFQAGFL----------IWPHVSCISCFPASGTRT-------SADEIQKFAV 64
           H DV   +SF A  L           WP VSC+S FPA G RT       S  EIQKFA+
Sbjct: 78  HRDVILTVSFNASLLEEHYVSKLHFSWPQVSCVSGFPARGIRTVLVSFRDSVGEIQKFAL 137

BLAST of Cla97C08G161500 vs. TAIR 10
Match: AT1G10710.1 (poor homologous synapsis 1 )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP +SC+S FP+ G+R        SA++IQKFA+RFST      FV  LK
Sbjct: 103 WPQMSCVSGFPSRGSRAIFVTYMDSANQIQKFALRFSTCDAALEFVEALK 152

BLAST of Cla97C08G161500 vs. TAIR 10
Match: AT1G10710.2 (poor homologous synapsis 1 )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 21  WPHVSCISCFPASGTRT-------SADEIQKFAVRFSTSKETDSFVNILK 64
           WP +SC+S FP+ G+R        SA++IQKFA+RFST      FV  LK
Sbjct: 103 WPQMSCVSGFPSRGSRAIFVTYMDSANQIQKFALRFSTCDAALEFVEALK 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885609.11.3e-2672.04uncharacterized protein LOC120075930 isoform X2 [Benincasa hispida][more]
XP_038885608.11.3e-2672.04protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X1 [Benincasa hispida][more]
XP_038886143.11.6e-0874.00protein POOR HOMOLOGOUS SYNAPSIS 1-like [Benincasa hispida][more]
XP_022131407.11.1e-0746.15protein POOR HOMOLOGOUS SYNAPSIS 1 [Momordica charantia][more]
XP_038885610.14.0e-0766.67protein POOR HOMOLOGOUS SYNAPSIS 1-like isoform X3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q45GQ73.3e-0448.00Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1BQX65.1e-0846.15protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Momordica charantia OX=3673 GN=LOC11100463... [more]
A0A6J1KPK19.7e-0768.00protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 P... [more]
A0A6J1GK723.7e-0666.00protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670... [more]
A0A2I4DDJ41.8e-0560.42protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Juglans regia OX=51240 GN=LOC108979080 PE=... [more]
A0A6P4CZH25.3e-0547.37protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arachis duranensis OX=130453 GN=LOC1074811... [more]
Match NameE-valueIdentityDescription
AT1G10710.12.3e-0548.00poor homologous synapsis 1 [more]
AT1G10710.22.3e-0548.00poor homologous synapsis 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G161500.2Cla97C08G161500.2mRNA