Cla97C08G159910 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G159910
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr08: 26824482 .. 26824745 (-)
RNA-Seq ExpressionCla97C08G159910
SyntenyCla97C08G159910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGCCGGTGGTACAATAATAATATTAACGGCGGTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTGAGATCAATAACATCAATGGAGAAGACAATGATAATATTAATGTTGTCAAGTTAAACAAAGAAGCAACCCCATATCAGAAACTCCACCGTACAATGAGGCCATTCCATGTTCTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

mRNA sequence

ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGCCGGTGGTACAATAATAATATTAACGGCGGTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTGAGATCAATAACATCAATGGAGAAGACAATGATAATATTAATGTTGTCAAGTTAAACAAAGAAGCAACCCCATATCAGAAACTCCACCGTACAATGAGGCCATTCCATGTTCTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

Coding sequence (CDS)

ATGCGGTTCTTCAAATCTCCTCCTGCAGGCGCCGGTGGTACAATAATAATATTAACGGCGGTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTGAGATCAATAACATCAATGGAGAAGACAATGATAATATTAATGTTGTCAAGTTAAACAAAGAAGCAACCCCATATCAGAAACTCCACCGTACAATGAGGCCATTCCATGTTCTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGATCCACTCCACAATCGTTGA

Protein sequence

MRFFKSPPAGAGGTIIILTAVAFVALLLISSAEINNINGEDNDNINVVKLNKEATPYQKLHRTMRPFHVLQSSKRKVPNASDPLHNR
Homology
[Close]
BLAST of Cla97C08G159910 vs. NCBI nr
Match: KAA0060932.1 (hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 62/100 (62.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 1  MRFF-KSPPAGAG----GTII-ILTAVAFVALLLISSAEINNINGEDNDNINVVKLNKE- 60
          MRF  KSP AGAG    G II ILTAV F+ LLL+ S+    ++     N+NVVKL KE 
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPILH-----NVNVVKLKKEG 60

Query: 61 --ATP--YQKL-HRTMR-PFHVLQSSKRKVPNASDPLHNR 88
            ATP   QKL HR MR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 61 ARATPSSSQKLHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]
BLAST of Cla97C08G159910 vs. NCBI nr
Match: KGN62473.1 (hypothetical protein Csa_018580 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.7e-10
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 1  MRFF-KSPPAGAG----GTII-ILTAVAFVALLLISSAEINNINGEDNDNINVVKLNKE- 60
          MRF  KSP AGAG    G +I +LT V F+ LLL+ S+     +     N+N VKL KE 
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISS-----SPPIPHNVNAVKLKKEG 60

Query: 61 --ATP-YQKLH--RTMRPFHVLQSSKRKVPNASDPLHNR 88
            ATP  QKLH  R  RP +VLQSSKRKVPNASDPLHNR
Sbjct: 61 GRATPSSQKLHHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

[Close]
BLAST of Cla97C08G159910 vs. ExPASy TrEMBL
Match: A0A5A7UYF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00650 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 62/100 (62.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 1  MRFF-KSPPAGAG----GTII-ILTAVAFVALLLISSAEINNINGEDNDNINVVKLNKE- 60
          MRF  KSP AGAG    G II ILTAV F+ LLL+ S+    ++     N+NVVKL KE 
Sbjct: 1  MRFLKKSPTAGAGVKPRGIIITILTAVTFLTLLLLISSSSPILH-----NVNVVKLKKEG 60

Query: 61 --ATP--YQKL-HRTMR-PFHVLQSSKRKVPNASDPLHNR 88
            ATP   QKL HR MR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 61 ARATPSSSQKLHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]
BLAST of Cla97C08G159910 vs. ExPASy TrEMBL
Match: A0A0A0LL43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 1  MRFF-KSPPAGAG----GTII-ILTAVAFVALLLISSAEINNINGEDNDNINVVKLNKE- 60
          MRF  KSP AGAG    G +I +LT V F+ LLL+ S+     +     N+N VKL KE 
Sbjct: 1  MRFLKKSPTAGAGVNPRGIVIALLTVVTFLTLLLLISS-----SPPIPHNVNAVKLKKEG 60

Query: 61 --ATP-YQKLH--RTMRPFHVLQSSKRKVPNASDPLHNR 88
            ATP  QKLH  R  RP +VLQSSKRKVPNASDPLHNR
Sbjct: 61 GRATPSSQKLHHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

The following BLAST results are available for this feature:
BLAST of Cla97C08G159910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060932.11.4e-1162.00hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa][more]
KGN62473.19.7e-1056.57hypothetical protein Csa_018580 [Cucumis sativus][more]
BLAST of Cla97C08G159910 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C08G159910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UYF86.6e-1262.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LL434.7e-1056.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1[more]
BLAST of Cla97C08G159910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G159910.1Cla97C08G159910.1mRNA