Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCTCTAATGGGCGGATGGAACTCTCCCGTTCTTGATCCTAAATCAGGTAATTGAAGTGAGTTTTGTTCGTATTTTTTCATTGATTTGTTAATGATTCATCACATTATGTACTATTTTTGTTATGGAGGTTAGTTAAATCATGTATATTAACTTCGAAATTTCAGTCAAGTTCAAGAGAAACCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATCGAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGGTTTCTATGCCGGTGGATCGTTATGTTGATCGCGAAACAGTCGGAATAGGCTACAAAAGATCGAGTTCGTTTCCGCCGGTGAAGGACGTTGCGGCGGAAGCAGAACTTGCACAGAACGATTTGGAGAGGGAAAACCTAGAGAAATTGAAGAAAATTGGCTGGTAAATTGAAATCGCGTAATAGTTAACTACTTGATCGCGGATCTTAGTGCTTGAAATTTATATGAACGAAAATAATGAATTAGCAGAGATCATGTGTGCGGTTGTTTAATTCTCTGTTTTTGTGCAGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTACAAAAGCTTACGCGTCGTTGTACGGCGTCTCCGACGTGGCCTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCTTAG
mRNA sequence
ATGGGCTCTCTAATGGGCGGATGGAACTCTCCCGTTCTTGATCCTAAATCAGTCAAGTTCAAGAGAAACCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATCGAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGGTTTCTATGCCGGTGGATCGTTATGTTGATCGCGAAACAGTCGGAATAGGCTACAAAAGATCGAGTTCGTTTCCGCCGGTGAAGGACGTTGCGGCGGAAGCAGAACTTGCACAGAACGATTTGGAGAGGGAAAACCTAGAGAAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTACAAAAGCTTACGCGTCGTTGTACGGCGTCTCCGACGTGGCCTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCTTAG
Coding sequence (CDS)
ATGGGCTCTCTAATGGGCGGATGGAACTCTCCCGTTCTTGATCCTAAATCAGTCAAGTTCAAGAGAAACCGGTCGCTTACGAAAGAGGAAATCGAAGCTTACTGGAGATCGAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGGTTTCTATGCCGGTGGATCGTTATGTTGATCGCGAAACAGTCGGAATAGGCTACAAAAGATCGAGTTCGTTTCCGCCGGTGAAGGACGTTGCGGCGGAAGCAGAACTTGCACAGAACGATTTGGAGAGGGAAAACCTAGAGAAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTACAAAAGCTTACGCGTCGTTGTACGGCGTCTCCGACGTGGCCTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCTTAG
Protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRETVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGATKAYASLYGVSDVASCKLNHSNGVGA
Homology
BLAST of Cla97C08G158530 vs. NCBI nr
Match:
XP_038886573.1 (uncharacterized protein LOC120076743 [Benincasa hispida])
HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 131/146 (89.73%), Postives = 140/146 (95.89%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYW+SK+K EEEHLRA+SMPVDRY+DRE
Sbjct: 1 MGSLMSGWNSPVLDPKSVKFKRNRSLTKDEIEAYWKSKKKSEEEHLRAISMPVDRYIDRE 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
TVGI YKRSSSFPP KDV+AEAE A+NDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA
Sbjct: 61 TVGIDYKRSSSFPPAKDVSAEAEFAENDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
TK YASLYGV+DVASCKLNHSNGVG+
Sbjct: 121 TKGYASLYGVADVASCKLNHSNGVGS 146
BLAST of Cla97C08G158530 vs. NCBI nr
Match:
XP_008444729.1 (PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo] >KAA0065224.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa])
HSP 1 Score: 251.1 bits (640), Expect = 5.7e-63
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+PVDRY DRE
Sbjct: 1 MGSLMGGWSSPVLDPKSVKFKRNRSLTKEEIDAYWKSKRKLEEEHLRAISLPVDRY-DRE 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
VGI YKRSSSFPP +DVA E++ +N L+R+NLE+L+K+GWWTRSNSAFLNEPPVLDGA
Sbjct: 61 KVGIDYKRSSSFPPARDVAVESKFVENKLDRKNLEELEKVGWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
+KA SLYGV+DVASCKLNH+NGVGA
Sbjct: 121 SKACVSLYGVADVASCKLNHNNGVGA 145
BLAST of Cla97C08G158530 vs. NCBI nr
Match:
XP_004152691.1 (uncharacterized protein LOC101215562 [Cucumis sativus] >KGN62611.1 hypothetical protein Csa_022203 [Cucumis sativus])
HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 122/147 (82.99%), Postives = 134/147 (91.16%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRAVS+PVD D E
Sbjct: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCE 60
Query: 61 TVGIGYKRSSSFPPVK-DVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDG 120
TVG+ YKRSSSFPP K DVA EA+ +N ++R+NLE+LKKIGWWTRSNSAFLNEPPVLDG
Sbjct: 61 TVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKKIGWWTRSNSAFLNEPPVLDG 120
Query: 121 ATKAYASLYGVSDVASCKLNHSNGVGA 147
A+KA SLYGV+DVASCKLNHSNGVGA
Sbjct: 121 ASKACVSLYGVADVASCKLNHSNGVGA 147
BLAST of Cla97C08G158530 vs. NCBI nr
Match:
XP_022144322.1 (uncharacterized protein LOC111014033 [Momordica charantia])
HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 111/146 (76.03%), Postives = 119/146 (81.51%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRA+SMPVD +VDR+
Sbjct: 1 MGSLMAGWNSPVQDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRD 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
VGI YKRSSSFPP A E + ++D ER+NLEKLK WWTRSNSAFLNEPPVLDGA
Sbjct: 61 VVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPNDWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
KAYA AS KLNHSNG+GA
Sbjct: 121 AKAYA--------ASFKLNHSNGIGA 138
BLAST of Cla97C08G158530 vs. NCBI nr
Match:
XP_023002545.1 (uncharacterized protein LOC111496358 [Cucurbita maxima])
HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRA+SMP VDR+
Sbjct: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMP----VDRD 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
TVGI YKRSSSFP A + A++DLER+NLEKLKK GWW RSNSAFLNEPPVLDGA
Sbjct: 61 TVGIDYKRSSSFPAAIGAAEKEVFAESDLERKNLEKLKKNGWWRRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVAS 136
KAYAS YGV+DVAS
Sbjct: 121 AKAYASQYGVTDVAS 131
BLAST of Cla97C08G158530 vs. ExPASy TrEMBL
Match:
A0A5A7VD66 (Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005630 PE=4 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+PVDRY DRE
Sbjct: 1 MGSLMGGWSSPVLDPKSVKFKRNRSLTKEEIDAYWKSKRKLEEEHLRAISLPVDRY-DRE 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
VGI YKRSSSFPP +DVA E++ +N L+R+NLE+L+K+GWWTRSNSAFLNEPPVLDGA
Sbjct: 61 KVGIDYKRSSSFPPARDVAVESKFVENKLDRKNLEELEKVGWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
+KA SLYGV+DVASCKLNH+NGVGA
Sbjct: 121 SKACVSLYGVADVASCKLNHNNGVGA 145
BLAST of Cla97C08G158530 vs. ExPASy TrEMBL
Match:
A0A1S3BBS7 (uncharacterized protein LOC103487979 OS=Cucumis melo OX=3656 GN=LOC103487979 PE=4 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 2.8e-63
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRA+S+PVDRY DRE
Sbjct: 1 MGSLMGGWSSPVLDPKSVKFKRNRSLTKEEIDAYWKSKRKLEEEHLRAISLPVDRY-DRE 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
VGI YKRSSSFPP +DVA E++ +N L+R+NLE+L+K+GWWTRSNSAFLNEPPVLDGA
Sbjct: 61 KVGIDYKRSSSFPPARDVAVESKFVENKLDRKNLEELEKVGWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
+KA SLYGV+DVASCKLNH+NGVGA
Sbjct: 121 SKACVSLYGVADVASCKLNHNNGVGA 145
BLAST of Cla97C08G158530 vs. ExPASy TrEMBL
Match:
A0A0A0LRI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361750 PE=4 SV=1)
HSP 1 Score: 249.6 bits (636), Expect = 8.0e-63
Identity = 122/147 (82.99%), Postives = 134/147 (91.16%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRAVS+PVD D E
Sbjct: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCE 60
Query: 61 TVGIGYKRSSSFPPVK-DVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDG 120
TVG+ YKRSSSFPP K DVA EA+ +N ++R+NLE+LKKIGWWTRSNSAFLNEPPVLDG
Sbjct: 61 TVGLDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKKIGWWTRSNSAFLNEPPVLDG 120
Query: 121 ATKAYASLYGVSDVASCKLNHSNGVGA 147
A+KA SLYGV+DVASCKLNHSNGVGA
Sbjct: 121 ASKACVSLYGVADVASCKLNHSNGVGA 147
BLAST of Cla97C08G158530 vs. ExPASy TrEMBL
Match:
A0A6J1CTD0 (uncharacterized protein LOC111014033 OS=Momordica charantia OX=3673 GN=LOC111014033 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 111/146 (76.03%), Postives = 119/146 (81.51%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRA+SMPVD +VDR+
Sbjct: 1 MGSLMAGWNSPVQDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRD 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
VGI YKRSSSFPP A E + ++D ER+NLEKLK WWTRSNSAFLNEPPVLDGA
Sbjct: 61 VVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPNDWWTRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVASCKLNHSNGVGA 147
KAYA AS KLNHSNG+GA
Sbjct: 121 AKAYA--------ASFKLNHSNGIGA 138
BLAST of Cla97C08G158530 vs. ExPASy TrEMBL
Match:
A0A6J1KP90 (uncharacterized protein LOC111496358 OS=Cucurbita maxima OX=3661 GN=LOC111496358 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 5.8e-53
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAVSMPVDRYVDRE 60
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRA+SMP VDR+
Sbjct: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMP----VDRD 60
Query: 61 TVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDGA 120
TVGI YKRSSSFP A + A++DLER+NLEKLKK GWW RSNSAFLNEPPVLDGA
Sbjct: 61 TVGIDYKRSSSFPAAIGAAEKEVFAESDLERKNLEKLKKNGWWRRSNSAFLNEPPVLDGA 120
Query: 121 TKAYASLYGVSDVAS 136
KAYAS YGV+DVAS
Sbjct: 121 AKAYASQYGVTDVAS 131
BLAST of Cla97C08G158530 vs. TAIR 10
Match:
AT1G19530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 75.5 bits (184), Expect = 4.0e-14
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 0
Query: 1 MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAVSMPVDRYVDR 60
MGSLM GW+S V DPKSV +R +SLT+EEI+ +W++K+K EEEH++A S V
Sbjct: 1 MGSLMSGWDSRVRDPKSV--RRCKSLTREEIDTFWKTKKKNEEEEHVQAFSKLV------ 60
Query: 61 ETVGIGYKRSSSFPPVKDVAAEAELAQNDLERENLEKLKKIGWWTRSNSAFLNEPPVLDG 120
+ + K+ + +L +N + K GWW ++ AFLNEP +G
Sbjct: 61 -------TQEGAQSQAKEKKSVDDLFEN--------QSKSSGWWRKTYWAFLNEPREEEG 112
Query: 121 ATKAYASLYGVSDVA 135
Y S + V+ +A
Sbjct: 121 RPNNYVSQFKVAHIA 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038886573.1 | 1.7e-70 | 89.73 | uncharacterized protein LOC120076743 [Benincasa hispida] | [more] |
XP_008444729.1 | 5.7e-63 | 81.51 | PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo] >KAA0065224.1 put... | [more] |
XP_004152691.1 | 1.7e-62 | 82.99 | uncharacterized protein LOC101215562 [Cucumis sativus] >KGN62611.1 hypothetical ... | [more] |
XP_022144322.1 | 8.3e-54 | 76.03 | uncharacterized protein LOC111014033 [Momordica charantia] | [more] |
XP_023002545.1 | 1.2e-52 | 80.74 | uncharacterized protein LOC111496358 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VD66 | 2.8e-63 | 81.51 | Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa ... | [more] |
A0A1S3BBS7 | 2.8e-63 | 81.51 | uncharacterized protein LOC103487979 OS=Cucumis melo OX=3656 GN=LOC103487979 PE=... | [more] |
A0A0A0LRI3 | 8.0e-63 | 82.99 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361750 PE=4 SV=1 | [more] |
A0A6J1CTD0 | 4.0e-54 | 76.03 | uncharacterized protein LOC111014033 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A6J1KP90 | 5.8e-53 | 80.74 | uncharacterized protein LOC111496358 OS=Cucurbita maxima OX=3661 GN=LOC111496358... | [more] |
Match Name | E-value | Identity | Description | |
AT1G19530.1 | 4.0e-14 | 36.30 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... | [more] |