Cla97C08G151980 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G151980
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RNA-binding protein 24-A
Location	Cla97Chr08: 20370468 .. 20374396 (+)
RNA-Seq Expression	Cla97C08G151980
Synteny	Cla97C08G151980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGTAGTAACAACAACCATGAAAAACGAAATTCTAAACCCTTCCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCGCCCTCCGCCGCCTCCCCCTCCCCTTTCTCTCCGGCGCCGCCATCCCCTCCTCCTCCTCCACCTCCACCACCTTCGTATTCGTATTCTCCATTATTATGATCATTATTATACTCCTTCCAGATTCCCTTTCCCTCTTCCCACTTTTTCCCCGTACAATTCCACCTTCTTCCTACGCTCCCTAGATCTCTCTCTCTATCTTTCTCTCTTTCCCTTCATCACCGACCTCCTCTCTTTCCCTCTCCCCTGTTCCTCTTTGCCCCATCTCCATCTCCCTTTCTTTCTCACTCATTTCTAGGGTTTCTCTTTTCCTTTCTAATTATGATCACTCTTATTGGCTTTGATCCTTCCTCTTCTGCCTTCCTTTCCCTCTTTCCTCTTTCTCTTTCTCTTCATCACTCCTCTCCTACCCTTTTCTTCCCTCTCCAATCCTTTTCAATTTCCTCCTGATTCTTCTCTCTGGGCTTGCTTTTGCTATGTGGCTTCCTCTCTAATCCTCTTCTCTTCCACTTGATCTGTCTCTTTGTTTATATTGTATCTTGGGGGTTCAATTCTTTTTCACTTGTTTGTTTTCTTCTTGAGTTTCTCCATTAATAATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTATTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTTTACACTTTTTTTTTTCCTTTCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTTGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCTTTTATTGCTTAGCAAATTGCATTGTTAGTTCCTGTCATGTGTATTTGTATGATCGAGGATTTTTCCTGGTATGTGCATTTTGTCCTAAGGAATTAATGGTCACAAATTCCTGTTTCGACTTTCGGGTCTTTGGAAGCTGTGGATTGATCAGTCTTTACTTCTATACTGCTGTTTCTTGCAGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCCCCGAGGTTCCTCTTTGTGCACCCAAGCCTGCCAATACATTCTAATTTCTAATTTTATTGTTTTGTTTAACTCTTATGTCCTGCGTTTTGCATTGCTTTGCTTTAAAAAATTCGAAGTTATGAGATTTTATTTATTTTCTTTTCTGTTTGCCGTCAAGTCTTATAGTAAATGAACGATATTGTCAAGTAATTGTTAAATGTAAATATATGCTTTCAGGTTGTGTATTTCATTTTAAGTACTACAACCTCGCTTGTTTTTTTATTGGACCTTATATCCTAGTTTTCATTGTGTCTTAAGATGGTTGATAGAAACCACGTGGTTGGTATTCATTCTCTGCAGTGCCCTCTTGATGTTAGTATTTATGATTAAAGTCACAAGAGGTATATTACCAATCACTACATGCAACATTTCTTAGGATATGTTTTTTTGTCACCTCCTAGAAGTCAGGATTGATACCTGATCAGTGGTGTGACTCAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTATTTGAGGATATGTGCCAAGACTAATGTAATTGAACGGGGAGAAGCATGGCTAGTATTATTGGAGAAGTTTCATATCTTGTTTTCACTTGCTTTATAGTTATATTAGAAGTCAGTTGGTAGGATTTGATCACTCTGATCTCTTGTTAATTGGGATACCGAATATTTGTCTTCTGGTATCACAGTGGACTGGGGTTTTTAAAATGATTTCCTCCTGTTAAGTTTGCATTGTTTCAGATGATGCAACCATCTAAATTTCTGCTTTCAAAATCTTATTTCTTAGAAATATTTAAAATGTTTTCAATCATTCTTCTTCTATGCAGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGTATCACTATTGCTTTATTTACTTATGTCTGCAATTTTGTGTTTGGAGGGTGGAAGTAGGGAAGGGTGATATGAAGGGTATCTTTAAAAGTTCGTCAAGGTTTTTGATAGTTCGAGCTTAATATGCTCAGTGGATTTGATTTTCTGTCTTGTATCCTTTGCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTTTACTTTGTATGCAGATTATTCTTGATTGCAACATTGAGCAATATTAGTTTTGACTAGTATTTTTAGGTATTTTTCTTTGAATTTTGGAATTTTTATTGTTATTAATTGGATCTCTTTTGTGTAATTATGTAATTTTTTTTAGTTTCTCCGCTGATCTGGTCTTTCGGTCTTTTTCTCGAGGCCGTTTTTTTTGTTTCTTTCTTTTGTTTATCTTTTGTAAGTGCCTTCTTTAGAAAAATCTCAAAGAAGTATGTTGGCCAACTTGTGTTTAATCATTGCATTGACTTAGTTTAGTTATGTGGTGAATAAAATTTGATAGTACTCTGAAGGGTCAAAATTTTTTCTCTGCTTTCAAATGGCACCATCCAGTGAATACGGTGACTCAAGACTGGTTATCTTATGAGGACAGTAAAGATTTATTTTGATTTTATTTTGTTCTTTTTTTGTTTTCTTTCTTTTTTGCTGTGAAAACTTCTTACATTCAAGAGGAATGAAAGTGCAACAGAAGGAGAGGCCAGTCATGGGGATATTGAAATCCATAACTGAAGGAAAACTGGACAAGGATCCATGGGGGCAAATGATGAGAAAAAATGTGTTTTACTACAGAACAAAGAAGATATAATTTATTGAGATATCTTTGTTGCTTAATATAATTTAGGTCACGTTTCTGTTTGTTTTACATGTACTATGTTTTTAATTGACTGATGTAGAATGGGGAAAACTAAAACAATATGGTTTGACATGTTAAGACATGCTTGATTAGAAAAACGTGTTTATTTCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGAGGAGTTGATCAGGTAGGCTCCAAATTTTCCAGTTAATAATTAATATTTGAAATTGCCCTTCCTATCTTTATCAGCAGCAGTCTCTAACTGCCTGCAATTGGACTACATTTATAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

mRNA sequence

CAAAGTAGTAACAACAACCATGAAAAACGAAATTCTAAACCCTTCCCTTCTCCTTTCCTTTCCCTTTCCCTTGTTTTCCTCCGCCGCCCTCCGCCGCCTCCCCCTCCCCTTTCTCTCCGGCGCCGCCATCCCCTCCTCCTCCTCCACCTCCACCACCTTCGTATTCGTATTCTCCATTATTATGATCATTATTATACTCCTTCCAGATTCCCTTTCCCTCTTCCCACTTTTTCCCCGTACAATTCCACCTTCTTCCTACGCTCCCTAGATCTCTCTCTCTATCTTTCTCTCTTTCCCTTCATCACCGACCTCCTCTCTTTCCCTCTCCCCTGTTCCTCTTTGCCCCATCTCCATCTCCCTTTCTTTCTCACTCATTTCTAGGGTTTCTCTTTTCCTTTCTAATTATGATCACTCTTATTGGCTTTGATCCTTCCTCTTCTGCCTTCCTTTCCCTCTTTCCTCTTTCTCTTTCTCTTCATCACTCCTCTCCTACCCTTTTCTTCCCTCTCCAATCCTTTTCAATTTCCTCCTGATTCTTCTCTCTGGGCTTGCTTTTGCTATGTGGCTTCCTCTCTAATCCTCTTCTCTTCCACTTGATCTGTCTCTTTGTTTATATTGTATCTTGGGGGTTCAATTCTTTTTCACTTGTTTGTTTTCTTCTTGAGTTTCTCCATTAATAATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

Coding sequence (CDS)

ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGIDRLQQDLEQRNCYLSGGLRI

Homology

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BLAST of Cla97C08G151980 vs. NCBI nr
Match: XP_004146763.1 (RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_003949 [Cucumis sativus])

HSP 1 Score: 557.8 bits (1436), Expect = 5.8e-155
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Cla97C08G151980 vs. NCBI nr
Match: XP_008464801.1 (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 557.0 bits (1434), Expect = 9.9e-155
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Cla97C08G151980 vs. NCBI nr
Match: KAA0045404.1 (RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding protein 24-A [Cucumis melo var. makuwa])

HSP 1 Score: 557.0 bits (1434), Expect = 9.9e-155
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Cla97C08G151980 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 548.5 bits (1412), Expect = 3.5e-152
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALT 240
           VGQQYLQIYGVPGSA+P IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           SSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Cla97C08G151980 vs. NCBI nr
Match: KAG6599081.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 548.5 bits (1412), Expect = 3.5e-152
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALT 240
           VGQQYLQIYGVPGSA+P IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           SSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-29
Identity = 108/287 (37.63%), Postives = 138/287 (48.08%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQ-PNR 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG        GRLR+        Q P  
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMTSPQQGPKN 121

Query: 137 G-----AYIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVGQQ 196
           G      ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG  
Sbjct: 122 GNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVGY- 181

Query: 197 YLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIL---QFSGPNVNALTS 256
                 V G+     Y  G   Q  P           + P PQ      + G  V    +
Sbjct: 182 ------VGGT-----YMNGYYAQMQP--------QPQSQPQPQYYHHHMYGGGRVMVGAA 241

Query: 257 SPMPTIQAPYP------SGIPAPVAAQPQFVVHSPSQFVQGIDRLQQ 283
           SPM      YP       G P P  ++P      P     G + +Q+
Sbjct: 242 SPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFSTPPISGTVGGESIQK 257

[Close]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.7e-29
Identity = 84/215 (39.07%), Postives = 103/215 (47.91%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQ 207
             Y Y Q    P        P        Y  +    Y Q      +A    Y Y     
Sbjct: 127 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 186

Query: 208 TVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 243
             P   GY    GY    PQ L  + P   A  ++
Sbjct: 187 ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

[Close]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-28
Identity = 87/220 (39.55%), Postives = 107/220 (48.64%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A      Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 243
           Q      P   GY    GY     Q +  + P   A  ++
Sbjct: 187 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.7e-28
Identity = 86/220 (39.09%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A      Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 243
           Q      P   GY    GY+    Q +  + P   A  ++
Sbjct: 187 QYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-27
Identity = 84/219 (38.36%), Postives = 104/219 (47.49%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYG 207
             Y Y Q    P    P+           P  GY      QY        SA    Y   
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQY--------SAAAAAYEQY 186

Query: 208 QLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 243
               +     GY A  GY     Q +  + P   A  ++
Sbjct: 187 PYAASPAAAAGYVAAGGYGYAVQQPITAAAPGTAAAAAA 209

[Close]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.8e-155
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.8e-155
Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 278

[Close]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 1.8e-154
Identity = 272/277 (98.19%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 276
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.7e-152
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALT 240
           VGQQYLQIYGVPGSA+P IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           SSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.2e-151
Identity = 263/276 (95.29%), Postives = 267/276 (96.74%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180
           LR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF
Sbjct: 121 LRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPF 180

Query: 181 VGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALT 240
           VGQQYLQIYGVPGSA+P IYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN LT
Sbjct: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNPLT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQG 277
           SSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQG
Sbjct: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQG 276

[Close]

BLAST of Cla97C08G151980 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 370.5 bits (950), Expect = 1.2e-102
Identity = 187/284 (65.85%), Postives = 218/284 (76.76%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQF 240
             QG Y+P++GQQYLQ+YGVPG+ N  +Y YGQL QT+P GHGY AV GY++P   ILQ 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 276
            GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQ 274

[Close]

BLAST of Cla97C08G151980 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 316.6 bits (810), Expect = 2.1e-86
Identity = 167/272 (61.40%), Postives = 199/272 (73.16%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-------GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ N   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 276
           M  IQ+PYPS  P+    Q + +V +P Q++Q
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQ 265

[Close]

BLAST of Cla97C08G151980 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 316.6 bits (810), Expect = 2.1e-86
Identity = 167/272 (61.40%), Postives = 199/272 (73.16%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-------GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ N   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 276
           M  IQ+PYPS  P+    Q + +V +P Q++Q
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQ 265

[Close]

BLAST of Cla97C08G151980 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-48
Identity = 128/260 (49.23%), Postives = 151/260 (58.08%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--PISYGRLRQPAVYVGGMQPN 136
           FVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP  P   G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYG- 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 ----VPGSAN--PTIYHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQILQFSG 254
                P S+N  P+ Y+Y Q     P  H    Y   H           +PS        
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

[Close]

BLAST of Cla97C08G151980 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-46
Identity = 123/252 (48.81%), Postives = 147/252 (58.33%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--PPISYGRLRQPAVYVGGMQPN 136
           FVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPR  PP   G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
              Y    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSANPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--V 249
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of Cla97C08G151980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146763.1	5.8e-155	98.20	RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_...	[more]
XP_008464801.1	9.9e-155	98.20	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
KAA0045404.1	9.9e-155	98.20	RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding prot...	[more]
XP_022946505.1	3.5e-152	96.38	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
KAG6599081.1	3.5e-152	96.38	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cla97C08G151980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.8e-29	37.63	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	8.7e-29	39.07	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	3.3e-28	39.55	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	5.7e-28	39.09	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q5ZMA3	2.8e-27	38.36	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Cla97C08G151980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHF9	4.8e-155	98.20	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	4.8e-155	98.20	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
A0A0A0KHA9	1.8e-154	98.19	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]
A0A6J1G3W1	1.7e-152	96.38	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	3.2e-151	95.29	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]

BLAST of Cla97C08G151980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	1.2e-102	65.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	2.1e-86	61.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	2.1e-86	61.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.0e-48	49.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	2.1e-46	48.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 1.8E-24 score: 97.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 e-value: 2.4E-17 score: 62.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.114126
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..122 e-value: 2.0E-25 score: 91.3
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 1..277
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 3.38313E-46 score: 148.532
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..277
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G151980.2	Cla97C08G151980.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding