Cla97C08G149530 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G149530
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr08: 17901808 .. 17902059 (+)
RNA-Seq ExpressionCla97C08G149530
SyntenyCla97C08G149530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCATCTAATTCAGTAGCCTCACTTCTCTCAGCTTATTTGCTTTTATTATTGTTTCTGTCTCTAATTACTTTTCCCTTGTCGGCCACCGGATACTCCGTCGACGCTTCTCCGTCACCGCCACCGCCAGAAGACATACAAAAGCGTCTGCCACATCAACTTTATGTACGTTATTCACGAGCCATATTGAGCATGCCACCATGGCCGATCGGGGTCGTCGTTCCGTCGCCACCGCCTCCTTTTCGCTAA

mRNA sequence

ATGAAGTCATCTAATTCAGTAGCCTCACTTCTCTCAGCTTATTTGCTTTTATTATTGTTTCTGTCTCTAATTACTTTTCCCTTGTCGGCCACCGGATACTCCGTCGACGCTTCTCCGTCACCGCCACCGCCAGAAGACATACAAAAGCGTCTGCCACATCAACTTTATGTACGTTATTCACGAGCCATATTGAGCATGCCACCATGGCCGATCGGGGTCGTCGTTCCGTCGCCACCGCCTCCTTTTCGCTAA

Coding sequence (CDS)

ATGAAGTCATCTAATTCAGTAGCCTCACTTCTCTCAGCTTATTTGCTTTTATTATTGTTTCTGTCTCTAATTACTTTTCCCTTGTCGGCCACCGGATACTCCGTCGACGCTTCTCCGTCACCGCCACCGCCAGAAGACATACAAAAGCGTCTGCCACATCAACTTTATGTACGTTATTCACGAGCCATATTGAGCATGCCACCATGGCCGATCGGGGTCGTCGTTCCGTCGCCACCGCCTCCTTTTCGCTAA

Protein sequence

MKSSNSVASLLSAYLLLLLFLSLITFPLSATGYSVDASPSPPPPEDIQKRLPHQLYVRYSRAILSMPPWPIGVVVPSPPPPFR
Homology
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BLAST of Cla97C08G149530 vs. NCBI nr
Match: KAG6602175.1 (hypothetical protein SDJN03_07408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-07
Identity = 45/101 (44.55%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 3   SSNSVASLLSAYLLLLLFLSLITFPLSATGYSVDASPSPPPPEDIQKRLPHQLYVRYSRA 62
           SS+S+AS+L A  LLLL LSL+T P +AT  S DASPSPPP +     L    ++R SRA
Sbjct: 4   SSSSMASILFA-SLLLLSLSLVTLPSTATANSDDASPSPPPSQRPHGHLRSHFHIRSSRA 63

Query: 63  --------------------ILSMPPWPIGVVVPSPPPPFR 84
                               +    PWP+ VV+PSPPPPFR
Sbjct: 64  MKQFLPIFKRVAKKQEELDRVFVNAPWPMVVVLPSPPPPFR 103

The following BLAST results are available for this feature:
BLAST of Cla97C08G149530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602175.19.6e-0744.55hypothetical protein SDJN03_07408, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cla97C08G149530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C08G149530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C08G149530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G149530.1Cla97C08G149530.1mRNA