Cla97C08G149450 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G149450
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr08: 17839766 .. 17840020 (+)
RNA-Seq ExpressionCla97C08G149450
SyntenyCla97C08G149450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF
Homology
BLAST of Cla97C08G149450 vs. NCBI nr
Match: KAA0058930.1 (hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK23702.1 hypothetical protein E5676_scaffold1607G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-19
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LI LNL SKF AQN+HSPP     P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSPP-----PRPPANNKQFTGKPWESLLR 60

Query: 61 PPSRPE-SDHQWPNDPVRKSPPPPF 85
          PPSRP  SDHQWPN PVR SPPPPF
Sbjct: 61 PPSRPPGSDHQWPNQPVRTSPPPPF 80

BLAST of Cla97C08G149450 vs. NCBI nr
Match: KGN47469.1 (hypothetical protein Csa_018822 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNLHSS-----LPRPPANNKQFTEKPWESLLR 60

Query: 61 PPSRPE-----SDHQWPNDPVRKSPPPPF 85
          PPSRP      SDHQWPN P+R SPPPPF
Sbjct: 61 PPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

BLAST of Cla97C08G149450 vs. NCBI nr
Match: KAG6607626.1 (hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 9.7e-15
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITP-------------PPPPNN 60
          MGS    PFI S+LI L+FL+L SKFTAQ+   PPAR I P               P NN
Sbjct: 1  MGSATSSPFISSLLIALVFLDLASKFTAQSFVYPPARPIAPMLKPIAPYLRSLFASPSNN 60

Query: 61 KQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF 85
          KQY+V+S R L  PP  P  DHQWPN+ V KSPPPPF
Sbjct: 61 KQYSVRSGRSLSVPPQSPGPDHQWPNESVSKSPPPPF 97

BLAST of Cla97C08G149450 vs. ExPASy TrEMBL
Match: A0A5D3DJG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00070 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LI LNL SKF AQN+HSPP     P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSPP-----PRPPANNKQFTGKPWESLLR 60

Query: 61 PPSRPE-SDHQWPNDPVRKSPPPPF 85
          PPSRP  SDHQWPN PVR SPPPPF
Sbjct: 61 PPSRPPGSDHQWPNQPVRTSPPPPF 80

BLAST of Cla97C08G149450 vs. ExPASy TrEMBL
Match: A0A0A0KF84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNLHSS-----LPRPPANNKQFTEKPWESLLR 60

Query: 61 PPSRPE-----SDHQWPNDPVRKSPPPPF 85
          PPSRP      SDHQWPN P+R SPPPPF
Sbjct: 61 PPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

BLAST of Cla97C08G149450 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 40/102 (39.22%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHS-----------PPARLITPP------- 60
          MG   L  ++FS+LI   FLNLPSK TA  +H            PP  L+ PP       
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPLLPPPPICRQGA 60

Query: 61 PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF 85
          PPP  KQ  +K    L  PP +     +WP     KSPPPPF
Sbjct: 61 PPPAKKQNKLKPLPSLSPPPPK----FKWPRRFTPKSPPPPF 98

BLAST of Cla97C08G149450 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-04
Identity = 39/102 (38.24%), Postives = 47/102 (46.08%), Query Frame = 0

Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVH-----------SPPARLITPP------- 60
          MG   L  ++FS+LI   FLNLP+K TA  +H           +PP  L  PP       
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLPPPPPICRQGA 60

Query: 61 PPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF 85
          PPP  KQ  +K    L  PP       +WP     KSPPPPF
Sbjct: 61 PPPAKKQNKLKQLPSLSPPPPM----FKWPRRFTPKSPPPPF 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058930.13.8e-1968.24hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK2370... [more]
KGN47469.12.1e-1762.92hypothetical protein Csa_018822 [Cucumis sativus][more]
KAG6607626.19.7e-1553.61hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJG31.8e-1968.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KF841.0e-1762.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1[more]
A0A0A0KI695.7e-0539.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1[more]
A0A5A7UW726.4e-0438.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G149450.1Cla97C08G149450.1mRNA