Cla97C08G149430 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G149430
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr08: 17814204 .. 17814491 (+)
RNA-Seq ExpressionCla97C08G149430
SyntenyCla97C08G149430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

mRNA sequence

ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

Coding sequence (CDS)

ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

Protein sequence

MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPPNNKQNTEKSQRSLPPPPPPSPGPGHQWPNEAVRKSPPPPS
Homology
BLAST of Cla97C08G149430 vs. NCBI nr
Match: KAG6607626.1 (hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 58/97 (59.79%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVI---YRSPLPAPPNN 60
          M SA    FI SLLIAL+FL+L SKFTAQ+   PPAR I P L  I    RS   +P NN
Sbjct: 1  MGSATSSPFISSLLIALVFLDLASKFTAQSFVYPPARPIAPMLKPIAPYLRSLFASPSNN 60

Query: 61 KQNTEKSQRSLPPPPPPSPGPGHQWPNEAVRKSPPPP 95
          KQ + +S RSL   PP SPGP HQWPNE+V KSPPPP
Sbjct: 61 KQYSVRSGRSL-SVPPQSPGPDHQWPNESVSKSPPPP 96

BLAST of Cla97C08G149430 vs. NCBI nr
Match: KAA0058930.1 (hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK23702.1 hypothetical protein E5676_scaffold1607G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 55/94 (58.51%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPPNNKQN 60
          M SAKLPSFIFSLLIALI LNL SKF AQN+ SPP R                P NNKQ 
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSPPPR---------------PPANNKQF 60

Query: 61 TEKSQRSLPPPPPPSPGPGHQWPNEAVRKSPPPP 95
          T K   SL  PP   PG  HQWPN+ VR SPPPP
Sbjct: 61 TGKPWESLLRPPSRPPGSDHQWPNQPVRTSPPPP 79

BLAST of Cla97C08G149430 vs. NCBI nr
Match: KGN47469.1 (hypothetical protein Csa_018822 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 6.6e-12
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPP-NNKQ 60
          M SAKLPSFIFSLLIALIFLNL SKF AQN+                 S LP PP NNKQ
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNL----------------HSSLPRPPANNKQ 60

Query: 61 NTEKSQRSL--PPPPPPS--PGPGHQWPNEAVRKSPPPP 95
           TEK   SL  PP  PPS  PG  HQWPN+ +R SPPPP
Sbjct: 61 FTEKPWESLLRPPSRPPSRPPGSDHQWPNQPIRISPPPP 83

BLAST of Cla97C08G149430 vs. ExPASy TrEMBL
Match: A0A5D3DJG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00070 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 55/94 (58.51%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPPNNKQN 60
          M SAKLPSFIFSLLIALI LNL SKF AQN+ SPP R                P NNKQ 
Sbjct: 1  MGSAKLPSFIFSLLIALIILNLLSKFAAQNLHSPPPR---------------PPANNKQF 60

Query: 61 TEKSQRSLPPPPPPSPGPGHQWPNEAVRKSPPPP 95
          T K   SL  PP   PG  HQWPN+ VR SPPPP
Sbjct: 61 TGKPWESLLRPPSRPPGSDHQWPNQPVRTSPPPP 79

BLAST of Cla97C08G149430 vs. ExPASy TrEMBL
Match: A0A0A0KF84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPP-NNKQ 60
          M SAKLPSFIFSLLIALIFLNL SKF AQN+                 S LP PP NNKQ
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNL----------------HSSLPRPPANNKQ 60

Query: 61 NTEKSQRSL--PPPPPPS--PGPGHQWPNEAVRKSPPPP 95
           TEK   SL  PP  PPS  PG  HQWPN+ +R SPPPP
Sbjct: 61 FTEKPWESLLRPPSRPPSRPPGSDHQWPNQPIRISPPPP 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607626.19.3e-1459.79hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0058930.11.7e-1258.51hypothetical protein E6C27_scaffold98G001050 [Cucumis melo var. makuwa] >TYK2370... [more]
KGN47469.16.6e-1259.60hypothetical protein Csa_018822 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJG38.5e-1358.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KF843.2e-1259.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G149430.1Cla97C08G149430.1mRNA