Cla97C08G147820 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G147820
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Glial fibrillary acidic protein-like
Location	Cla97Chr08: 14454343 .. 14454657 (+)
RNA-Seq Expression	Cla97C08G147820
Synteny	Cla97C08G147820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

mRNA sequence

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Coding sequence (CDS)

ATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGTTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Protein sequence

MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

Homology

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-33
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 40  ICRKAREVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 99

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF  Q  TL+QG++PTR   KELS FLGII Q LGRFGCYH
Sbjct: 100 VADQFLVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFGCYH 143

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-33
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+ DDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 151 ICRKAREVIIDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 210

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   KELS FLGII Q LGRFGCYH
Sbjct: 211 VADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 6.3e-32
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AR+V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 362 ICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 421

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   KELS FLGII Q LGRF CYH
Sbjct: 422 VADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRCYH 465

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+   ++E+GAEKLRQMA 
Sbjct: 151 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 210

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   +ELS FLGII Q LGRFGCYH
Sbjct: 211 VADQFSVQARTLRQGVIPTRDIDEELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Cla97C08G147820 vs. NCBI nr
Match: KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 65/104 (62.50%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CRNAREVVT+D+A+LK E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+
Sbjct: 144 ICRNAREVVTEDHARLKNEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMAR 203

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
            ADQF+ +   LQQ IVP +  S+ELSRFLGII  YLG FGCYH
Sbjct: 204 KADQFSTRTIALQQDIVPIQRGSRELSRFLGIIGHYLGCFGCYH 247

[Close]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 40  ICRKAREVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 99

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF  Q  TL+QG++PTR   KELS FLGII Q LGRFGCYH
Sbjct: 100 VADQFLVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFGCYH 143

[Close]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+ DDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 151 ICRKAREVIIDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 210

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   KELS FLGII Q LGRFGCYH
Sbjct: 211 VADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AR+V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA+
Sbjct: 362 ICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAR 421

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   KELS FLGII Q LGRF CYH
Sbjct: 422 VADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRCYH 465

[Close]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.2e-32
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+   ++E+GAEKLRQMA 
Sbjct: 151 ICRKAREVITDDYAQLMEKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMAS 210

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
           +ADQF+ Q  TL+QG++PTR   +ELS FLGII Q LGRFGCYH
Sbjct: 211 VADQFSVQARTLRQGVIPTRDIDEELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL
Match: A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.8e-31
Identity = 65/104 (62.50%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAK 60
           +CRNAREVVT+D+A+LK E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+
Sbjct: 144 ICRNAREVVTEDHARLKNEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMAR 203

Query: 61  MADQFAAQVTTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH 105
            ADQF+ +   LQQ IVP +  S+ELSRFLGII  YLG FGCYH
Sbjct: 204 KADQFSTRTIALQQDIVPIQRGSRELSRFLGIIGHYLGCFGCYH 247

The following BLAST results are available for this feature:

BLAST of Cla97C08G147820 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27025.1	4.4e-33	67.31	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0065294.1	7.5e-33	66.35	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0046606.1	6.3e-32	65.38	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0025321.1	1.1e-31	65.38	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0033848.1	1.2e-30	62.50	glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia...	[more]

BLAST of Cla97C08G147820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUN1	2.1e-33	67.31	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VDD9	3.6e-33	66.35	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TXA1	3.1e-32	65.38	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SM49	5.2e-32	65.38	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BQ93	5.8e-31	62.50	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cla97C08G147820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G147820.1	Cla97C08G147820.1	mRNA