Cla97C08G147640 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G147640
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRetrotransposon protein
LocationCla97Chr08: 13353715 .. 13354847 (-)
RNA-Seq ExpressionCla97C08G147640
SyntenyCla97C08G147640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACTGTAAACTGCCCGAGGATTTGGATGATATGAACTCAAATTTGGCTACCACTAAGGGAGACAAGATCAATTTCATTGAGATATCAAATGAATGGACCAAGTGGAGAGAGGTGAGTTGGCACAACAAATGTTTTATGAATGGGAGTTTATAATAATTTGTAGTTTTATTCAACTCTAGTTAATTAGAACTTCTAATTTCTCTTTAATGTCTTTATAAAATAACTAATTTATTTTGAACTTTGTTCTTAAAAATGTAAACTTTGTCTACAATAATTACAAAAAATACATGAAGAATTTTAGTACGTTCTACTTTAACCTTATTATAATGTATATATACATATAGTAAAATGTCAAGGCTAGAGCACCAAAGCACATCTAGACAAAAGAGAAGAATGCAAAGTTGGTCAAATGCTTAATGTCCTTGGTCCAGGTTGGTGGATGGAGATTAGATAATGGGATGTTTCAACCCGGCTACTTGGCTTAGCTACAACGTATGATGACAGAGAAGATACCCGACTGTAAGATCCAAGGAATCCCCACCATAGATTGCAGGATTTAAACCCTAGAAAAACATTACCGAGCAATTGTAGAGATGTAAGTACTAGCCTGTAGTAGATTTGGCTAGAATGAAGAATTTCAATGCATTGTTGTAGAGAGGGAGACGTTCGATGGATGAGTGTGAAGGTAAGAATTCAAAATCATGTTATACTCACATTATTTAGCATTGTGTAACATGTACTTTCATCTTCATGGAAAGCCATCCTACAAGGACCAGGATACAGGGGTAGGGTCATAGACCCTTGAAGACATAACGTCAAATTTGCCAGAGCATATGGACGAAGGTGTTCACTTCAATGCATCAAAAGAATACAACATCCCAATATCATCATTTCTTAATCATGGAATGGATATGTCACAAAATGATATGCAAGGAACACCCACTAGTCAAAACACTCCAAAAGGAAATGCATCCACGAGGAGTAAAAGGAACTAAGCTTCATATCACAATGAAGTGGTAGAGGTTGTTAGGGATGTGATGGACATCCAAAATAGCCAAATGAGGACGATTGAAGAATGGCCAAAGAGAATTGTGCAACAAAGTTCAGTTTACATGTTGCAGCAGTGA

mRNA sequence

ATGGGTGACTGTAAACTGCCCGAGGATTTGGATGATATGAACTCAAATTTGGCTACCACTAAGGGAGACAAGATCAATTTCATTGAGATATCAAATGAATGGACCAAGTGGAGAGAGACCCTTGAAGACATAACGTCAAATTTGCCAGAGCATATGGACGAAGGTGTTCACTTCAATGCATCAAAAGAATACAACATCCCAATATCATCATTTCTTAATCATGGAATGGATATGTCACAAAATGATATGCAAGGAACACCCACTAGTCAAAACACTCCAAAAGGAAATGCATCCACGAGGATGGTAGAGGTTGTTAGGGATGTGATGGACATCCAAAATAGCCAAATGAGGACGATTGAAGAATGGCCAAAGAGAATTGTGCAACAAAGTTCAGTTTACATGTTGCAGCAGTGA

Coding sequence (CDS)

ATGGGTGACTGTAAACTGCCCGAGGATTTGGATGATATGAACTCAAATTTGGCTACCACTAAGGGAGACAAGATCAATTTCATTGAGATATCAAATGAATGGACCAAGTGGAGAGAGACCCTTGAAGACATAACGTCAAATTTGCCAGAGCATATGGACGAAGGTGTTCACTTCAATGCATCAAAAGAATACAACATCCCAATATCATCATTTCTTAATCATGGAATGGATATGTCACAAAATGATATGCAAGGAACACCCACTAGTCAAAACACTCCAAAAGGAAATGCATCCACGAGGATGGTAGAGGTTGTTAGGGATGTGATGGACATCCAAAATAGCCAAATGAGGACGATTGAAGAATGGCCAAAGAGAATTGTGCAACAAAGTTCAGTTTACATGTTGCAGCAGTGA

Protein sequence

MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMVEVVRDVMDIQNSQMRTIEEWPKRIVQQSSVYMLQQ
Homology
BLAST of Cla97C08G147640 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07
Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 1   MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------- 60
           M + ++ +DLD+ +S  ATT GD+IN+IE SN W++WR                      
Sbjct: 269 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLAPKDLLHKSFPYYDDLFYV 328

Query: 61  -----------ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTP 120
                      ET  D+ SN+P   +  V  + S + +IP+    + G+ MS ++M G  
Sbjct: 329 FGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM--MYSQGVHMSPDEMFGIR 388

Query: 121 TSQNTPKGNAST-----------RMVEVVRDVMDIQNSQMRTIEEWPK 125
             Q + + N S+             VEV++  ++  N Q++ I  WPK
Sbjct: 389 AGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPK 434

BLAST of Cla97C08G147640 vs. NCBI nr
Match: KAA0040620.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05667.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-06
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 3   DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASK 62
           D     D+++++S  AT  G +IN+IE SN+W++W++ L  I  +  E  D   H   S 
Sbjct: 61  DIIFQSDVEEVDSTYATIGGVEINYIEASNDWSQWKDQLAHIMFSDWELRD---HVPLSD 120

Query: 63  EYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMVEVVRDVMDIQNSQMRTIEEW 122
            +++ I +  + G+DMS ++M G                VEV+R+ ++  N Q++ I  W
Sbjct: 121 SHDLDILTMYSQGVDMSPDEMLGICA-------------VEVIRNAIESANDQLKAIAYW 167

Query: 123 PKR 126
           PK+
Sbjct: 181 PKQ 167

BLAST of Cla97C08G147640 vs. NCBI nr
Match: XP_038885881.1 (protein ALP1-like [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.6e-04
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1   MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETL 42
           M + +L EDLD+++S+ ATT+G++IN+IE SNEWT+WR  L
Sbjct: 204 MTNSELIEDLDEVDSSFATTRGNEINYIESSNEWTQWRNKL 244

BLAST of Cla97C08G147640 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 1   MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------- 60
           M + ++ +DLD+ +S  ATT GD+IN+IE SN W++WR                      
Sbjct: 269 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLAPKDLLHKSFPYYDDLFYV 328

Query: 61  -----------ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTP 120
                      ET  D+ SN+P   +  V  + S + +IP+    + G+ MS ++M G  
Sbjct: 329 FGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM--MYSQGVHMSPDEMFGIR 388

Query: 121 TSQNTPKGNAST-----------RMVEVVRDVMDIQNSQMRTIEEWPK 125
             Q + + N S+             VEV++  ++  N Q++ I  WPK
Sbjct: 389 AGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPK 434

BLAST of Cla97C08G147640 vs. ExPASy TrEMBL
Match: A0A5D3C1H4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 3   DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASK 62
           D     D+++++S  AT  G +IN+IE SN+W++W++ L  I  +  E  D   H   S 
Sbjct: 61  DIIFQSDVEEVDSTYATIGGVEINYIEASNDWSQWKDQLAHIMFSDWELRD---HVPLSD 120

Query: 63  EYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMVEVVRDVMDIQNSQMRTIEEW 122
            +++ I +  + G+DMS ++M G                VEV+R+ ++  N Q++ I  W
Sbjct: 121 SHDLDILTMYSQGVDMSPDEMLGICA-------------VEVIRNAIESANDQLKAIAYW 167

Query: 123 PKR 126
           PK+
Sbjct: 181 PKQ 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033290.12.4e-0727.38putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0040620.17.9e-0630.08retrotransposon protein [Cucumis melo var. makuwa] >TYK05667.1 retrotransposon p... [more]
XP_038885881.19.6e-0456.10protein ALP1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SQU21.2e-0727.38Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3C1H43.8e-0630.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G147640.2Cla97C08G147640.2mRNA