Cla97C07G139290 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C07G139290
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Delta 9 desaturase
Location	Cla97Chr07: 27136514 .. 27136702 (+)
RNA-Seq Expression	Cla97C07G139290
Synteny	Cla97C07G139290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAATAAGAAAAGAGCTTGAAGATAAACCTGATATGAAGGAGCCATTTTCAGTGGTGAAGTCTAAACGAGCTTTCTTAAAGAGAAAATGGACAACTTTAGACCGACGTTCTGCTGGTGGAATTTTGTTCTTGCATGTGCTTTCTCTCTTGGCTCCATTTCACTACAATTGGGAAGCCTTTTGG

mRNA sequence

ATGGAGGCAATAAGAAAAGAGCTTGAAGATAAACCTGATATGAAGGAGCCATTTTCAGTGGTGAAGTCTAAACGAGCTTTCTTAAAGAGAAAATGGACAACTTTAGACCGACGTTCTGCTGGTGGAATTTTGTTCTTGCATGTGCTTTCTCTCTTGGCTCCATTTCACTACAATTGGGAAGCCTTTTGG

Coding sequence (CDS)

ATGGAGGCAATAAGAAAAGAGCTTGAAGATAAACCTGATATGAAGGAGCCATTTTCAGTGGTGAAGTCTAAACGAGCTTTCTTAAAGAGAAAATGGACAACTTTAGACCGACGTTCTGCTGGTGGAATTTTGTTCTTGCATGTGCTTTCTCTCTTGGCTCCATTTCACTACAATTGGGAAGCCTTTTGG

Protein sequence

MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAFW

Homology

[Close]

BLAST of Cla97C07G139290 vs. NCBI nr
Match: XP_022955953.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita moschata] >KAG6581939.1 Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+EDK D K+PFSVV  KR FL RKWTTLDRR+A GILFLHVL L APFHYNW 
Sbjct: 1  MEATRKEVEDKYDKKKPFSVVNPKRPFLNRKWTTLDRRNAAGILFLHVLGLFAPFHYNWP 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. NCBI nr
Match: XP_023528301.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 6.4e-19
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+EDK D K+PFS+V  KR FL RKWTTLDRR+A GILFLHVL L APFHYNW 
Sbjct: 1  MEATRKEVEDKYDKKKPFSMVNPKRPFLNRKWTTLDRRNAAGILFLHVLGLFAPFHYNWP 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. NCBI nr
Match: XP_004152341.2 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic [Cucumis sativus] >KGN52907.1 hypothetical protein Csa_014904 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+EDK D K+ FS+V  KRAF  RKWTTLDRR+A GILFLH+LSLLAPFH+NW 
Sbjct: 1  MEAARKEVEDKHDKKKQFSMVNPKRAFFNRKWTTLDRRTAAGILFLHLLSLLAPFHFNWA 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. NCBI nr
Match: XP_022153467.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+ED+ D K  FSVVK +R  LKRKWT LDRRSAG ILFLH+LSLLAPFH NW 
Sbjct: 1  MEATRKEVEDQKDKKVAFSVVKPRRPLLKRKWTILDRRSAGAILFLHLLSLLAPFHCNWA 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. NCBI nr
Match: XP_022153442.1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKE-PFS---VVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFH 60
          MEA RKELEDK + K+  FS   V+K +R FLKRKWT LDRRSAGGILFLH+L LLAPFH
Sbjct: 1  MEATRKELEDKNEXKKVGFSDGIVLKPRRGFLKRKWTILDRRSAGGILFLHLLCLLAPFH 60

Query: 61 YNWEAFW 64
           NW AFW
Sbjct: 61 CNWAAFW 67

[Close]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot
Match: Q9FPD5 (Delta-9 desaturase-like 3 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06120 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 19 SVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAF 63
          +V K KRAFL RKWT +D      +  +H+L LLAPF+Y WEAF
Sbjct: 15 AVRKEKRAFLFRKWTRVDVMRVSAVGAVHLLCLLAPFNYTWEAF 58

[Close]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot
Match: Q9LVZ3 (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-06
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 20  VVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAFW 64
           VV++KR+F +R WT+ D       +  H+LSLLAPF+++WEAFW
Sbjct: 79  VVRTKRSFWERSWTSWDVSKLVIFVGTHLLSLLAPFYFSWEAFW 122

[Close]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot
Match: Q9LND8 (Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06100 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-06
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 19 SVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAF 63
          SV K KRA++ RKWT  D   A  +  +H+L LLAPF+Y WEAF
Sbjct: 15 SVRKEKRAYVLRKWTQFDVGRASTVGTVHLLCLLAPFNYKWEAF 58

[Close]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot
Match: Q9LND9 (Delta-9 desaturase-like 1 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06090 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-05
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 24 KRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEA 62
          KRAF  RKWT +D   A  +  +H+L LLAPF+Y WEA
Sbjct: 20 KRAFFFRKWTRIDIARASAVGAVHLLCLLAPFNYKWEA 57

[Close]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot
Match: Q9FV68 (Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii OX=28973 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.3e-05
Identity = 17/42 (40.48%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 22  KSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAFW 64
           +  + F +RKW   D ++A  +L LH L+ +APF+++W+AFW
Sbjct: 71  RKAKGFWRRKWNPRDIQNAVTLLVLHALAAMAPFYFSWDAFW 112

[Close]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL
Match: A0A6J1GVF3 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457787 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+EDK D K+PFSVV  KR FL RKWTTLDRR+A GILFLHVL L APFHYNW 
Sbjct: 1  MEATRKEVEDKYDKKKPFSVVNPKRPFLNRKWTTLDRRNAAGILFLHVLGLFAPFHYNWP 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL
Match: A0A0A0KWV4 (Delta 9 desaturase OS=Cucumis sativus OX=3659 GN=Csa_4G006140 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+EDK D K+ FS+V  KRAF  RKWTTLDRR+A GILFLH+LSLLAPFH+NW 
Sbjct: 1  MEAARKEVEDKHDKKKQFSMVNPKRAFFNRKWTTLDRRTAAGILFLHLLSLLAPFHFNWA 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL
Match: A0A6J1DIZ7 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111020970 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          MEA RKE+ED+ D K  FSVVK +R  LKRKWT LDRRSAG ILFLH+LSLLAPFH NW 
Sbjct: 1  MEATRKEVEDQKDKKVAFSVVKPRRPLLKRKWTILDRRSAGAILFLHLLSLLAPFHCNWA 60

Query: 61 AFW 64
          AFW
Sbjct: 61 AFW 63

[Close]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL
Match: A0A6J1DIX0 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111020949 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKE-PFS---VVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFH 60
          MEA RKELEDK + K+  FS   V+K +R FLKRKWT LDRRSAGGILFLH+L LLAPFH
Sbjct: 1  MEATRKELEDKNEXKKVGFSDGIVLKPRRGFLKRKWTILDRRSAGGILFLHLLCLLAPFH 60

Query: 61 YNWEAFW 64
           NW AFW
Sbjct: 61 CNWAAFW 67

[Close]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL
Match: A0A6J1GCE1 (palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452892 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 15 KEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAFW 64
          K   S+VKSK A L RKWT LDRRSAGG+LFLH L LLAPFH NW AFW
Sbjct: 6  KVALSMVKSKPALLNRKWTILDRRSAGGVLFLHFLCLLAPFHCNWPAFW 54

[Close]

BLAST of Cla97C07G139290 vs. TAIR 10
Match: AT1G06120.1 (Fatty acid desaturase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 19 SVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAF 63
          +V K KRAFL RKWT +D      +  +H+L LLAPF+Y WEAF
Sbjct: 15 AVRKEKRAFLFRKWTRVDVMRVSAVGAVHLLCLLAPFNYTWEAF 58

[Close]

BLAST of Cla97C07G139290 vs. TAIR 10
Match: AT3G15870.1 (Fatty acid desaturase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-07
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 20  VVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAFW 64
           VV++KR+F +R WT+ D       +  H+LSLLAPF+++WEAFW
Sbjct: 79  VVRTKRSFWERSWTSWDVSKLVIFVGTHLLSLLAPFYFSWEAFW 122

[Close]

BLAST of Cla97C07G139290 vs. TAIR 10
Match: AT1G06100.1 (Fatty acid desaturase family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-07
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 19 SVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEAF 63
          SV K KRA++ RKWT  D   A  +  +H+L LLAPF+Y WEAF
Sbjct: 15 SVRKEKRAYVLRKWTQFDVGRASTVGTVHLLCLLAPFNYKWEAF 58

[Close]

BLAST of Cla97C07G139290 vs. TAIR 10
Match: AT1G06090.1 (Fatty acid desaturase family protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 24 KRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWEA 62
          KRAF  RKWT +D   A  +  +H+L LLAPF+Y WEA
Sbjct: 20 KRAFFFRKWTRIDIARASAVGAVHLLCLLAPFNYKWEA 57

[Close]

BLAST of Cla97C07G139290 vs. TAIR 10
Match: AT1G06080.1 (delta 9 desaturase 1 )

HSP 1 Score: 45.8 bits (107), Expect = 1.5e-05
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1  MEAIRKELEDKPDMKEPFSVVKSKRAFLKRKWTTLDRRSAGGILFLHVLSLLAPFHYNWE 60
          + A  KE  +K    +   + + KRA  +RKW  LD   A   LF+H L LLAPF++ W 
Sbjct: 3  LSASEKEENNKKMAADKAEMGRKKRAMWERKWKRLDIVKAFASLFVHFLCLLAPFNFTWP 62

Query: 61 A 62
          A
Sbjct: 63 A 63

The following BLAST results are available for this feature:

BLAST of Cla97C07G139290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955953.1	2.9e-19	77.78	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C...	[more]
XP_023528301.1	6.4e-19	76.19	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [C...	[more]
XP_004152341.2	2.4e-18	74.60	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic [Cucumi...	[more]
XP_022153467.1	4.6e-17	74.60	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [M...	[more]
XP_022153442.1	4.3e-15	71.64	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [M...	[more]

BLAST of Cla97C07G139290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPD5	2.2e-06	54.55	Delta-9 desaturase-like 3 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06120 P...	[more]
Q9LVZ3	2.9e-06	50.00	Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LND8	3.8e-06	54.55	Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06100 P...	[more]
Q9LND9	4.2e-05	55.26	Delta-9 desaturase-like 1 protein OS=Arabidopsis thaliana OX=3702 GN=At1g06090 P...	[more]
Q9FV68	9.3e-05	40.48	Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii OX=28973 PE=1 SV=1	[more]

BLAST of Cla97C07G139290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVF3	1.4e-19	77.78	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS...	[more]
A0A0A0KWV4	1.2e-18	74.60	Delta 9 desaturase OS=Cucumis sativus OX=3659 GN=Csa_4G006140 PE=3 SV=1	[more]
A0A6J1DIZ7	2.2e-17	74.60	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS...	[more]
A0A6J1DIX0	2.1e-15	71.64	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS...	[more]
A0A6J1GCE1	1.8e-11	73.47	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like OS...	[more]

BLAST of Cla97C07G139290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06120.1	1.6e-07	54.55	Fatty acid desaturase family protein	[more]
AT3G15870.1	2.0e-07	50.00	Fatty acid desaturase family protein	[more]
AT1G06100.1	2.7e-07	54.55	Fatty acid desaturase family protein	[more]
AT1G06090.1	3.0e-06	55.26	Fatty acid desaturase family protein	[more]
AT1G06080.1	1.5e-05	39.34	delta 9 desaturase 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G139290.1	Cla97C07G139290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009979	16:0 monogalactosyldiacylglycerol desaturase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water