Cla97C06G119830 (gene) Watermelon (97103) v2.5

Overview
NameCla97C06G119830
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr06: 21363332 .. 21363646 (-)
RNA-Seq ExpressionCla97C06G119830
SyntenyCla97C06G119830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGATTAAAGAGATGAGAGTATATGATTACGAGATAATATGACGCTTTTGCCACTAAGTTTGAATGAGCGGTAATAAATACTTTTATCTTTTGAGTTATGTTCAGGATTAGTGATTAG

mRNA sequence

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGATTAGTGATTAG

Coding sequence (CDS)

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGATTAGTGATTAG

Protein sequence

MASTSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVADYDFAPAAISD
Homology
[Close]
BLAST of Cla97C06G119830 vs. NCBI nr
Match: KGN65403.1 (hypothetical protein Csa_019940 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 8.8e-14
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPP   PLP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDR-CHGGKNYLDPPPPP---PLPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

[Close]
BLAST of Cla97C06G119830 vs. ExPASy TrEMBL
Match: A0A0A0LUD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-14
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPP   PLP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDR-CHGGKNYLDPPPPP---PLPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

The following BLAST results are available for this feature:
BLAST of Cla97C06G119830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65403.18.8e-1473.13hypothetical protein Csa_019940 [Cucumis sativus][more]
BLAST of Cla97C06G119830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C06G119830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD74.3e-1473.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1[more]
BLAST of Cla97C06G119830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G119830.2Cla97C06G119830.2mRNA