Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA
mRNA sequence
ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA
Coding sequence (CDS)
ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA
Protein sequence
MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
Homology
BLAST of Cla97C06G119395 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 213.0 bits (541), Expect = 1.8e-51
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+G L G + PP+FLD Q+QPN + WERYNR +MCWI SSLSEEKM E+VS
Sbjct: 50 VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVS 109
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
LE T IW L YDS T A+IM LKT+LQ++RKDG SVSQYL++IKE+ DKF+A+GEP
Sbjct: 110 LETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEP 169
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
+SYRDHLA++LDGL S+YNAFV SI NR D PSL
Sbjct: 170 LSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203
BLAST of Cla97C06G119395 vs. NCBI nr
Match:
GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])
HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ L G PP FLD QQ Q N F W+RYNR +M WI +S++E + +IV
Sbjct: 71 VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
+ IWE L+ Y + + A + L+T LQ I+K+GL+ Y+ + + + + ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
++Y DHL Y L GL YN FV SIQ++ RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 224
BLAST of Cla97C06G119395 vs. NCBI nr
Match:
GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])
HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ L G PP FLD QQ Q N F W+RYNR +M WI +S++E + +IV
Sbjct: 71 VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
+ IWE L+ Y + + A + L+T LQ I+K+GL+ Y+ + + + + ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
++Y DHL Y L GL YN FV SIQ++ RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSV 224
BLAST of Cla97C06G119395 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/154 (44.81%), Postives = 100/154 (64.94%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ + +SPP++LD Q N F W+R N+ +M WI SSL+ + +IV
Sbjct: 60 IIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVE 119
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
IW L Y+S +IA +M+L +QLQ I+K + +S+YLS++K V D+F+ IGEP
Sbjct: 120 YSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEP 179
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
+SYRD L IL+GL +Y+ FV SI NR DRPSL
Sbjct: 180 LSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSL 213
BLAST of Cla97C06G119395 vs. NCBI nr
Match:
PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])
HSP 1 Score: 129.0 bits (323), Expect = 3.5e-26
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ + G PP F D + N + W+R+NR IM WI +SL++ M +IV
Sbjct: 72 IIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVG 131
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
IWE L Y S+++AKI L+ +LQ++RKDGL+ +Y+ + K + + +A+GEP
Sbjct: 132 YASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEP 191
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLD 151
+S +DHL Y+ GL +YNAFV SI R D
Sbjct: 192 VSCKDHLLYLFGGLDREYNAFVTSITKRPD 221
BLAST of Cla97C06G119395 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 213.0 bits (541), Expect = 8.8e-52
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+G L G + PP+FLD Q+QPN + WERYNR +MCWI SSLSEEKM E+VS
Sbjct: 50 VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVS 109
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
LE T IW L YDS T A+IM LKT+LQ++RKDG SVSQYL++IKE+ DKF+A+GEP
Sbjct: 110 LETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEP 169
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
+SYRDHLA++LDGL S+YNAFV SI NR D PSL
Sbjct: 170 LSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203
BLAST of Cla97C06G119395 vs. ExPASy TrEMBL
Match:
A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 8.0e-29
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ L G PP FLD QQ Q N F W+RYNR +M WI +S++E + +IV
Sbjct: 71 VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
+ IWE L+ Y + + A + L+T LQ I+K+GL+ Y+ + + + + ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
++Y DHL Y L GL YN FV SIQ++ RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 224
BLAST of Cla97C06G119395 vs. ExPASy TrEMBL
Match:
A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ L G PP FLD QQ Q N F W+RYNR +M WI +S++E + +IV
Sbjct: 71 VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
+ IWE L+ Y + + A + L+T LQ I+K+GL+ Y+ + + + + ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
++Y DHL Y L GL YN FV SIQ++ RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSV 224
BLAST of Cla97C06G119395 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/154 (44.81%), Postives = 100/154 (64.94%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ + +SPP++LD Q N F W+R N+ +M WI SSL+ + +IV
Sbjct: 60 IIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVE 119
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
IW L Y+S +IA +M+L +QLQ I+K + +S+YLS++K V D+F+ IGEP
Sbjct: 120 YSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEP 179
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
+SYRD L IL+GL +Y+ FV SI NR DRPSL
Sbjct: 180 LSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSL 213
BLAST of Cla97C06G119395 vs. ExPASy TrEMBL
Match:
A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query: 1 MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
+++NGL+ + G PP F D + N + W+R+NR IM WI +SL++ M +IV
Sbjct: 72 IIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVG 131
Query: 61 LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
IWE L Y S+++AKI L+ +LQ++RKDGL+ +Y+ + K + + +A+GEP
Sbjct: 132 YASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEP 191
Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLD 151
+S +DHL Y+ GL +YNAFV SI R D
Sbjct: 192 VSCKDHLLYLFGGLDREYNAFVTSITKRPD 221
BLAST of Cla97C06G119395 vs. TAIR 10
Match:
AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 29/120 (24.17%), Postives = 63/120 (52.50%), Query Frame = 0
Query: 35 WERYNRFIMCWISSSLSEEKMAEIVSLEMTTA-IWEPLKCTYDSNTIAKIMALKTQLQHI 94
W+ + + WI ++++ + I+ + T +W L+ + N A+ + + +L+
Sbjct: 67 WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126
Query: 95 RKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPS 154
D LSV +Y ++K ++D + + PIS R + ++L+GL KY+ + I+++ PS
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186
BLAST of Cla97C06G119395 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.8 bits (107), Expect = 3.6e-05
Identity = 25/120 (20.83%), Postives = 62/120 (51.67%), Query Frame = 0
Query: 35 WERYNRFIMCWISSSLSEEK-MAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHI 94
W++ + + + +L+ ++ V+ + IW +K + +N A+ + L ++L+
Sbjct: 65 WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTK 124
Query: 95 RKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPS 154
+ V+ Y ++K++ D + P++ R+ + Y+L+GL K++ + I++R PS
Sbjct: 125 DIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPS 184
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 1.8e-51 | 64.29 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
GFY85402.1 | 1.7e-28 | 41.56 | hypothetical protein Acr_04g0001400 [Actinidia rufa] | [more] |
GFZ12741.1 | 2.2e-28 | 41.56 | UBX domain-containing protein [Actinidia rufa] | [more] |
RVW69807.1 | 2.8e-28 | 44.81 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
PON47862.1 | 3.5e-26 | 40.67 | hypothetical protein TorRG33x02_321990 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 8.8e-52 | 64.29 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A7J0EGI5 | 8.0e-29 | 41.56 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1 | [more] |
A0A7J0GPN0 | 1.0e-28 | 41.56 | UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... | [more] |
A0A438GC62 | 1.4e-28 | 44.81 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A0A2P5BGF8 | 1.7e-26 | 40.67 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT5G48050.1 | 4.5e-08 | 24.17 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
AT1G34070.1 | 3.6e-05 | 20.83 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |