Cla97C06G118190 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C06G118190
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	FRIGIDA-like protein
Location	Cla97Chr06: 11731743 .. 11732060 (-)
RNA-Seq Expression	Cla97C06G118190
Synteny	Cla97C06G118190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

mRNA sequence

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

Coding sequence (CDS)

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

Protein sequence

MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHLQ

Homology

[Close]

BLAST of Cla97C06G118190 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYD 60
           M KQGR TIRLG WRGENKQ PNMWK LWRKLRREKRKILE S  T +FYSSGPKLIPYD
Sbjct: 9   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILE-SSNTTTFYSSGPKLIPYD 68

Query: 61  PLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHL 105
           P SYSQNFDQ TAGEELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 69  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 111

[Close]

BLAST of Cla97C06G118190 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 60/100 (60.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 3   KQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPL 62
           K  ++TIRLG WR  +   PN+WK LWRKLRREKR          + YSSG  LIPYDP 
Sbjct: 155 KSSKQTIRLGRWR--SGYQPNLWKVLWRKLRREKR-------NKTTTYSSG-NLIPYDPF 214

Query: 63  SYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQ 103
           SYS NFDQ  A EE D L RSFSARFALAD AS  FL  Q
Sbjct: 215 SYSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of Cla97C06G118190 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-18
Identity = 58/100 (58.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 3   KQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPL 62
           K  ++TIRLG WR  +   PN+WK LWRKLRR+KR          + YSSG  LIPYDP 
Sbjct: 155 KSSKQTIRLGRWR--SGYQPNLWKLLWRKLRRQKR-------NKTTTYSSG-NLIPYDPF 214

Query: 63  SYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQ 103
           SYS NFDQ  A E+ D L RSFSARFALAD AS  FL  Q
Sbjct: 215 SYSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of Cla97C06G118190 vs. NCBI nr
Match: DAD44715.1 (TPA_asm: hypothetical protein HUJ06_002945 [Nelumbo nucifera])

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-10
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 25  WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
           W+ LWR++ +EK+KI         FYSS P  +PYD  SYSQNFDQ +A  E DNLSRSF
Sbjct: 55  WRVLWRRIMKEKKKI---------FYSSSPLQVPYDAYSYSQNFDQGSAWTEPDNLSRSF 110

Query: 85  SARFA 90
           SARFA
Sbjct: 115 SARFA 110

[Close]

BLAST of Cla97C06G118190 vs. NCBI nr
Match: TKY44653.1 (hypothetical protein E2542_SST30930 [Spatholobus suberectus])

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-10
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E         S+ P  +PYDP +YSQNFDQ TA +E DNLSRSF
Sbjct: 37 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYTYSQNFDQGTAKDEPDNLSRSF 92

Query: 85 SARFA 90
          S RFA
Sbjct: 97 SVRFA 92

[Close]

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.1e-41
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYD 60
           M KQGR TIRLG WRGENKQ PNMWK LWRKLRREKRKILE S  T +FYSSGPKLIPYD
Sbjct: 4   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILE-SSNTTTFYSSGPKLIPYD 63

Query: 61  PLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHL 105
           P SYSQNFDQ TAGEELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 64  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 106

[Close]

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL
Match: A0A371GGA5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 25  WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
           WK LW KL++EK+K+ E         S+ P  +PYDP +YSQNFDQ TA +E DNLSRSF
Sbjct: 45  WKMLWMKLKKEKKKLFE---------SASPVQVPYDPYTYSQNFDQGTAKDEPDNLSRSF 100

Query: 85  SARFA 90
           S RFA
Sbjct: 105 SVRFA 100

[Close]

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL
Match: A0A151S3I6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.7e-10
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E         S+ P  +PYDP SYSQNFDQ TA +E DNLSRSF
Sbjct: 35 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSF 90

Query: 85 SARFA 90
            RFA
Sbjct: 95 CVRFA 90

[Close]

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL
Match: A0A5N6QHY1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003268 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.7e-10
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 5  GRRTIRLGDW----RGENKQPPN------MWKALWRKLRREKRKILELSQRTNSFYSSGP 64
          GRR+I+LG++      E  + P+       WKA W K ++E+R+I         FYS  P
Sbjct: 10 GRRSIQLGEYYQEVESERTRVPSARSNKLRWKAFWMKFKKERRRI---------FYSPPP 69

Query: 65 KLIPYDPLSYSQNFDQSTAGEELDNLSRSFSARFA 90
            I YDP +YSQNFD  +A +E DNLSRSFSARFA
Sbjct: 70 IQISYDPYTYSQNFDHGSAWDEPDNLSRSFSARFA 95

[Close]

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL
Match: I1KIS1 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E         +S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 37 WKVLWMKLKKEKKKLFE--------SASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 93

Query: 85 SARFA 90
          S RFA
Sbjct: 97 SVRFA 93

[Close]

BLAST of Cla97C06G118190 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-04
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 36  KRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTA---GEELDNLSRSFSARFA 90
           K K+L +  +     +S  K++ Y+P  YS NFDQ       +E +NLSRSFS RFA
Sbjct: 50  KWKVLLMKLKLLPSRASSTKVVAYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFA 106

The following BLAST results are available for this feature:

BLAST of Cla97C06G118190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653121.1	1.7e-40	85.58	hypothetical protein Csa_019717, partial [Cucumis sativus]	[more]
KAG6587950.1	1.1e-18	60.00	hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021839.1	6.9e-18	58.00	hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro...	[more]
DAD44715.1	6.9e-10	58.46	TPA_asm: hypothetical protein HUJ06_002945 [Nelumbo nucifera]	[more]
TKY44653.1	6.9e-10	56.92	hypothetical protein E2542_SST30930 [Spatholobus suberectus]	[more]

BLAST of Cla97C06G118190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C06G118190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3	8.1e-41	85.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
A0A371GGA5	4.3e-10	56.92	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 P...	[more]
A0A151S3I6	5.7e-10	56.92	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1	[more]
A0A5N6QHY1	5.7e-10	46.32	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003268 PE=4 SV=1	[more]
I1KIS1	1.3e-09	55.38	Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1	[more]

BLAST of Cla97C06G118190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	4.6e-04	42.11	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 20..103
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 20..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G118190.1	Cla97C06G118190.1	mRNA