Cla97C05G102360 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G102360
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	LIM domain-containing protein WLIM1
Location	Cla97Chr05: 30648565 .. 30649512 (+)
RNA-Seq Expression	Cla97C05G102360
Synteny	Cla97C05G102360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTTAAGGTAATCAGTATCCCTTTATATCAAACTCTGATCTGTCGTTTCATTGAAATCAGATTTCAGATCGCTAACTGGAAAGCTTAATTTTGGTGGGTTATGGTTAAATTAAACGATTCACTGATTACAGATCTGATTTGCAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGTATTCAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATCGCTTTAAATCATTCACTCTCATCAGCTCGAGCCAACATTCTTTTGTTTTTTGATTTTAGGAACACCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGGTAGCTAATTGATTATATTATTCTCTGTTTTGTGTTAATTTCAACTCAAAAGGGATTACTCAAATGCATTTGACAGAAACCAACAGCGACTAAGGTTGCAAGCATGTTCATCGGTACTAAAGACAAGTGCCTTGGCTGTAAGAACACTGTTTATCCAACTGAGAAGGTAAATTTGAGCTGAAATGGAAGAAGCACTGTTCTGAAGTGGGTAGTTGAAATAATTGTGAACTTTAAGACCATTTATGTATGTATTTCTCAGGTTTCAGTGAATGGAACTTCGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGAAGGTCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAA

mRNA sequence

ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTTAAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGAAACCAACAGCGACTAAGGTTGCAAGCATGTTCATCGGTACTAAAGACAAGTGCCTTGGCTGTAAGAACACTGTTTATCCAACTGAGAAGGTTTCAGTGAATGGAACTTCGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGAAGGTCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAA

Coding sequence (CDS)

ATGGCTTTTGCAGGAACCACCCAGAAATGCATGGCCTGCGACAAAACTGTCTATTTAGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGTCACCACTGCAATGGAACCCTTAAGCTAAGCAATTACAATTCGTTTGAAGGGGTGCTTTATTGTCGGCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGAAACCAACAGCGACTAAGGTTGCAAGCATGTTCATCGGTACTAAAGACAAGTGCCTTGGCTGTAAGAACACTGTTTATCCAACTGAGAAGGTTTCAGTGAATGGAACTTCGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGAAGGTCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAAGGAAGCCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH

Homology

[Close]

BLAST of Cla97C05G102360 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.4e-103
Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKP ATK+ASMF+GTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.0 bits (990), Expect = 1.8e-103
Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+PTATKVASMF+GTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. NCBI nr
Match: XP_023536448.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.0 bits (990), Expect = 1.8e-103
Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 48  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 107

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+PTATKVASMF+GTKDKCLGCKNTVYPT
Sbjct: 108 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 167

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 168 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226

[Close]

BLAST of Cla97C05G102360 vs. NCBI nr
Match: XP_008452649.1 (PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo] >KAA0064449.1 LIM domain-containing protein WLIM1 [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 6.9e-103
Identity = 176/179 (98.32%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKPTATKVASMFIGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. NCBI nr
Match: XP_022936105.1 (LIM domain-containing protein WLIM1 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 6.9e-103
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+PTATKVASMF+GTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 8.8e-93
Identity = 153/177 (86.44%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+P  TKV++MF GT++KC+GC  TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 8.8e-77
Identity = 127/175 (72.57%), Postives = 147/175 (84.00%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RVYHKACFRCHHCN TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPTE 121
           FDQLFKRTGSL+KSF+GTPK  KPE+    E  +A +++S F GT+DKC  C   VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLE 177
           +V V+GT+YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHH QL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-58
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.8e-57
Identity = 103/179 (57.54%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKP----TATKVASMFIGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.5e-55
Identity = 95/175 (54.29%), Postives = 124/175 (70.86%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC ACDKTVY++D LT +   YHK+CFRC HC GTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HF+QLFK +G+  K+F+     GK EKP D    T +K++S F GT+DKC  CK TVYP 
Sbjct: 61  HFEQLFKESGNYSKNFQA----GKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV++ G SYHK+CF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.3e-103
Identity = 176/179 (98.32%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKPTATKVASMFIGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.3e-103
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+PTATKVASMF+GTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL
Match: A0A1S3BUC8 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.3e-103
Identity = 176/179 (98.32%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKPTATKVASMFIGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.4e-103
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKPTATKVASMF+GTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL
Match: A0A6J1IP16 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111477270 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 7.5e-103
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 47  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 106

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+PTATKVASMF+GTKDKCLGCKNTVYPT
Sbjct: 107 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 166

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGTSYHKSCFKCCHG CTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 167 EKVSVNGTSYHKSCFKCCHGRCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 225

[Close]

BLAST of Cla97C05G102360 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 340.9 bits (873), Expect = 6.3e-94
Identity = 153/177 (86.44%), Postives = 164/177 (92.66%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+P  TKV++MF GT++KC+GC  TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Cla97C05G102360 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-59
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HC   L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPTATKVASMFIGTKDKCLGCKNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Cla97C05G102360 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-58
Identity = 103/179 (57.54%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKP----TATKVASMFIGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Cla97C05G102360 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-58
Identity = 103/179 (57.54%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKP----TATKVASMFIGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Cla97C05G102360 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-58
Identity = 103/179 (57.54%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HC   L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKP----TATKVASMFIGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of Cla97C05G102360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900157.1	1.4e-103	98.32	LIM domain-containing protein WLIM1 [Benincasa hispida]	[more]
KAG6591426.1	1.8e-103	98.32	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023536448.1	1.8e-103	98.32	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008452649.1	6.9e-103	98.32	PREDICTED: LIM domain-containing protein WLIM1 [Cucumis melo] >KAA0064449.1 LIM ...	[more]
XP_022936105.1	6.9e-103	97.77	LIM domain-containing protein WLIM1 [Cucurbita moschata]	[more]

BLAST of Cla97C05G102360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	8.8e-93	86.44	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	8.8e-77	72.57	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	3.2e-58	59.43	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	7.8e-57	57.54	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	9.5e-55	54.29	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of Cla97C05G102360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG01	3.3e-103	98.32	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1FCP1	3.3e-103	97.77	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]
A0A1S3BUC8	3.3e-103	98.32	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4...	[more]
A0A0A0L3T9	4.4e-103	97.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]
A0A6J1IP16	7.5e-103	97.77	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Cla97C05G102360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	6.3e-94	86.44	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.2e-59	59.43	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	5.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	5.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	5.5e-58	57.54	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 109..161 e-value: 3.7E-12 score: 56.4 coord: 9..61 e-value: 3.2E-11 score: 53.3
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..64 e-value: 2.0E-10 score: 40.7 coord: 110..164 e-value: 2.0E-11 score: 43.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.305699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.4345
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 1.0E-19 score: 72.4 coord: 104..174 e-value: 1.0E-18 score: 69.3
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..179
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..179
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.30456E-39 score: 127.196
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 9.0527E-37 score: 119.883
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G102360.1	Cla97C05G102360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding