Cla97C05G101273 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G101273
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	F-box protein
Location	Cla97Chr05: 29916743 .. 29917066 (-)
RNA-Seq Expression	Cla97C05G101273
Synteny	Cla97C05G101273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

mRNA sequence

ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

Coding sequence (CDS)

ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

Protein sequence

MVSLLFVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVLTFSKSGTNPNHDQWRHLQFMNIGAYLNGVIYWIGKEKYKENE

Homology

[Close]

BLAST of Cla97C05G101273 vs. NCBI nr
Match: XP_038890298.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDS-----ESSS 65
           +   D IFNPMTNEF+QVPR +LD DI+YFGFG TTT + YKLFRV  S S     ES S
Sbjct: 127 YTRCDGIFNPMTNEFLQVPRGQLDNDIYYFGFGFTTTTKQYKLFRVCDSFSRNCEFESGS 186

Query: 66  MMDVLTFSKSGTNPNHDQWRHLQFMNI-----GAYLNGVIYWIGKEKYKENE 108
           +MDVLTFS+SGTN NH+QWR+L ++ +     GAYLNG IYWIGKE+ KENE
Sbjct: 187 IMDVLTFSRSGTNANHNQWRYLHYLPLDIHSNGAYLNGFIYWIGKEEEKENE 238

[Close]

BLAST of Cla97C05G101273 vs. NCBI nr
Match: TYK24751.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.5e-24
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVL 65
           F   D IFNPMTNEF+QVPRHELDGD +++G G + T + YK+FRV  + + +SS+M +L
Sbjct: 142 FSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV--NPNNNSSIMYIL 201

Query: 66  TFSKSGTNPNHDQWRHLQFMNI-----GAYLNGVIYWIGKEKYKENE 108
           TF +S TN  ++QWR L  + I     G YLNG IYW+G+++YKENE
Sbjct: 202 TFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFIYWMGRKQYKENE 246

[Close]

BLAST of Cla97C05G101273 vs. NCBI nr
Match: KAA0039746.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 10  DAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVLTFSK 69
           D IFNPMTNEF+QVPRHELDGD +++G G + T + YK+FRV  + + +SS+M +LTF +
Sbjct: 141 DGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV--NPNNNSSIMYILTFRR 200

Query: 70  SGTNPNHDQWRHLQFMNI-----GAYLNGVIYWIGKEKYKENE 108
           S TN  ++QWR L  + I     G YLNG IYW+G+++YKENE
Sbjct: 201 SETNYKYNQWRQLHSLPILICCDGVYLNGFIYWMGRKQYKENE 241

[Close]

BLAST of Cla97C05G101273 vs. NCBI nr
Match: KAA0039747.1 (F-box protein [Cucumis melo var. makuwa] >TYK24750.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESS 65
           F   D IFNPMTNEF Q+PR ELDGDI+ +  G + T + YKLFRV+ S         +S
Sbjct: 128 FTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNS 187

Query: 66  SMMDVLTFS-KSGTNPNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           S+MDVLTF+ +S TN NH QWR L  + +    GAYLNGVIYWIG ++ KENE
Sbjct: 188 SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGAYLNGVIYWIGTKEDKENE 240

[Close]

BLAST of Cla97C05G101273 vs. NCBI nr
Match: XP_008460183.1 (PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESS 65
           F   D IFNPMTNEF Q+PR ELDGDI+ +  G + T + YKLFRV+ S         +S
Sbjct: 128 FTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNS 187

Query: 66  SMMDVLTFS-KSGTNPNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           S+MDVLTF+ +S TN NH QWR L  + +    GAYLNGVIYWIG ++ KENE
Sbjct: 188 SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGAYLNGVIYWIGTKEDKENE 240

[Close]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL
Match: A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVL 65
           F   D IFNPMTNEF+QVPRHELDGD +++G G + T + YK+FRV  + + +SS+M +L
Sbjct: 142 FSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV--NPNNNSSIMYIL 201

Query: 66  TFSKSGTNPNHDQWRHLQFMNI-----GAYLNGVIYWIGKEKYKENE 108
           TF +S TN  ++QWR L  + I     G YLNG IYW+G+++YKENE
Sbjct: 202 TFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFIYWMGRKQYKENE 246

[Close]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-24
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 10  DAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVLTFSK 69
           D IFNPMTNEF+QVPRHELDGD +++G G + T + YK+FRV  + + +SS+M +LTF +
Sbjct: 141 DGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV--NPNNNSSIMYILTFRR 200

Query: 70  SGTNPNHDQWRHLQFMNI-----GAYLNGVIYWIGKEKYKENE 108
           S TN  ++QWR L  + I     G YLNG IYW+G+++YKENE
Sbjct: 201 SETNYKYNQWRQLHSLPILICCDGVYLNGFIYWMGRKQYKENE 241

[Close]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL
Match: A0A5A7TE00 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-23
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESS 65
           F   D IFNPMTNEF Q+PR ELDGDI+ +  G + T + YKLFRV+ S         +S
Sbjct: 128 FTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNS 187

Query: 66  SMMDVLTFS-KSGTNPNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           S+MDVLTF+ +S TN NH QWR L  + +    GAYLNGVIYWIG ++ KENE
Sbjct: 188 SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGAYLNGVIYWIGTKEDKENE 240

[Close]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL
Match: A0A1S3CCE7 (uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-23
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESS 65
           F   D IFNPMTNEF Q+PR ELDGDI+ +  G + T + YKLFRV+ S         +S
Sbjct: 128 FTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNS 187

Query: 66  SMMDVLTFS-KSGTNPNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           S+MDVLTF+ +S TN NH QWR L  + +    GAYLNGVIYWIG ++ KENE
Sbjct: 188 SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGAYLNGVIYWIGTKEDKENE 240

[Close]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL
Match: A0A0A0LPC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVS--------------LSDSE 71
           IFNPMTNEF QV   +   D +++GFGL+   + YKLFRVS                  +
Sbjct: 169 IFNPMTNEFFQVSEQDTFDDFYHYGFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDD 228

Query: 72  SSSMMDVLTFSKSGTN--PNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           +   M+VLTF +SGTN  P H+QWRHL  ++     G YLNG+IYW+GKEK K+ +
Sbjct: 229 THYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDLIHGVYLNGIIYWLGKEKGKKEK 284

The following BLAST results are available for this feature:

BLAST of Cla97C05G101273 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890298.1	1.2e-30	63.39	F-box protein At3g07870-like [Benincasa hispida]	[more]
TYK24751.1	8.5e-24	53.27	F-box protein [Cucumis melo var. makuwa]	[more]
KAA0039746.1	1.1e-23	54.37	F-box protein [Cucumis melo var. makuwa]	[more]
KAA0039747.1	1.2e-22	54.87	F-box protein [Cucumis melo var. makuwa] >TYK24750.1 F-box protein [Cucumis melo...	[more]
XP_008460183.1	1.2e-22	54.87	PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]	[more]

BLAST of Cla97C05G101273 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMB7	4.1e-24	53.27	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140...	[more]
A0A5A7TCF3	5.4e-24	54.37	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ...	[more]
A0A5A7TE00	6.0e-23	54.87	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130...	[more]
A0A1S3CCE7	6.0e-23	54.87	uncharacterized protein LOC103499068 OS=Cucumis melo OX=3656 GN=LOC103499068 PE=...	[more]
A0A0A0LPC6	9.9e-18	44.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1	[more]

BLAST of Cla97C05G101273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31790:SF414	F-BOX AND ASSOCIATED INTERACTION DOMAINS-CONTAINING-LIKE PROTEIN	coord: 9..98
None	No IPR available	PANTHER	PTHR31790	OS02G0783600 PROTEIN	coord: 9..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G101273.1	Cla97C05G101273.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane