Cla97C05G096140 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G096140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	Cla97Chr05: 24353581 .. 24356509 (-)
RNA-Seq Expression	Cla97C05G096140
Synteny	Cla97C05G096140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTAATTTCAGGCAATACCATTTTTCCCTTTGCGTTATAGAAGAGTTCCCAATCGCCTAAAAGCTCTCCTTTTTTGTCCAAGTTTTTCTTCGCCTCTTCCAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCCACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAACTCGTTCTTTCTTAATCTAGATACCTTACGTTTATTTGCTTTAACAATCATGTATTTCCGTTTCGTATATCGCTCCTTTTCTGGTTGTGAAACTGCTAACGTTATTGTGTTTTATGGTTTCATTCCCGCGAAATTATTTCTTTGCGGCGTTGGTGTCGATGTATATTGGAGTCTGGGGAATTTCATTTTTCTTGTTCTTCTTTTGGTCCTATTTTAGCGATCTAGTAGTGGAGAAATGCTTAGTTACGTTTCTTCTTCTTCTTTTTTTAACCTTCAATGGTTGATTTGTTAGGTATCTTTTTAGTTATTGTTGAGACATCTTTTTGAAATTTTATGCTCCTCACCGTTCTTAAGTTTGCTTCCCCCCTCGGTTTTGAATTGTTGAGATGCATCCGATGTATATTTATCGAGTTTCAAGATGGGAAGTACATCTTTTTTAATTATTGATTCTTGGAAGCTGGAATTGATATTTGGCTATGAATGTGTTGAGCTGTCTTTCTGTTTCTTTTCCACTAGAGGAAATTTTCTGTTTTTTAATATAGAACTTTGAATTATTGTTGTTTTTCTGGGGAAAAAAAAACTCTGGGATGGAATGTTGATGTTTATCTTCTTTCAGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGGTCTGTCCATTCGCTTTGCTTATGTTTGATTGTGCTTAGGCCTGAATATTTTCTGTCTTTGACCTTTTGTTTTTGCTTCTGTTTACAGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCCTGTTTTCTCATTCAAGATGTTGAAGTTTATTTGGTGTGTATTGTTATCCACATTTATACAAGATCCCTGGATCTTGAACCCACGTTTTGCACATGTGTTAGCAGAGAGGCTTAGGCTGTTGACTACCCTCCTAATAGACATACTAAGAAATGAGAAAGAAAATGAATTAGAATATGCCTTCATTGTGTTAATTGGCGTACCACAAAATAAGTATAAGATTCCTGAATATGGTGTGTAGATCCACATATGCGTACAGGATGGCAGTCTAGAGTATTTGATTGGCAACATAGAGAATATATTACATCTTACAGCACTCAGCTGTTGACTATGATACATGCTTTGCAATCTTGAAACTTATGGTACCTGGCTTGGCTGATAAATCTGCTGGTTACTTCGGAGTGCAATTTCTCCTTTATTCTCATGCACAATGGTGTTTGCTTTATGTAGTTCTTTCAAACATAGTAATATTTGTGGAAATTCATAAATTTATTTTTAGGGTTTTCTGCTACAATTTGCTTTTCCATTTGAGCAACATGGTGGTAAGAGTAATTTCATTTTTTTTTTTTGGGCGTGTATTGGAATCTTTCTAAAATTTTGACCCAGAAAATAGAATGGATGTTTAAGTTTAGCTGGTCTAAACACTCACAAACGCATAGGGATTTCATTTTAATTGAATCTTCTAAAGAGTAAAGAGTCACTTTCATGAAAATATTCTGCCGTATAGGTTACTTGTGTCCTTAGTTGTAAAGTTATTAGTACTTTATCATCAAATTTTAAAACTATTGCCAATATGTGGCTCAATGGTTAGTGAATCTCTTATAGTCAAACGCTCTAGAAAGAACAGACTTGACAATGCAAATCGGTTATTATTGACCTATTAATTGATCCATGTTTCTTTTAATTCCATTTTGTCAAACTATGTTCACTATATATAACTTCCCTTGGTTTGGTTCATTGTAAAATTTGACATTTTAATAGAATACTCCTGTTATTAGCCATTTCAATCGCTTTGATTCCATGTGTTTTACCTCCTTGATCTCCAATTAAAACATATACTCTGATAAACTAGGCAAATTAGAATGCTTGGAAATAAGATTACGAAACTGGGTTGATGCTTGCTTTTGAACACGTGCAATTTGTTTAATTGAATGATAATGAATCTCTTTATGTTTTGTCTCTTAATGTTATCCAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGGTTTTCCAAATGGCAGTCAATGACCCTCTTGCTAATTTTTGCAGTGAAGGATGCTTCCCTATCCATTGAACGTTCTACATTATTTATATGATTGAAGTTGAGGTTCATTGTTCTCTTCTATTGCTGATAACTATTTTTGTTCTGCAGAACTGCAGAACTCTTGATTAGCTTTAGGTAATTTGAATTGAGACAGAGCACTTTATACGTACCATGTATGACCTATTTTTGAACACATTTAGTTAAAACTAGTTTATTTATATATATGTTACGCAAATAAACTACTTTGCACTGCACTTTTGTTACTGATAAGCTTCTTGTTTGGTCTTGTCTGTATGTTTTTTTTTTGAATTAATTTCTAGTTAATGGCACATCGGATTAA

mRNA sequence

ATGTCGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCCACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCCTGTTTTCTCATTCAAGATGTTGAAGTTTATTTGGTGTGTATTGTTATCCACATTTATACAAGATCCCTGGATCTTGAACCCACGTTTTGCACATGTGTTAGCAGAGAGGCTTAGGCTGTTGACTACCCTCCTAATAGACATACTAAGAAATGAGAAAGAAAATGAATTAGAATATGCCTTCATTGTGTTAATTGGCGTACCACAAAATAAGTATAAGATTCCTGAATATGATCCACATATGCGTACAGGATGGCAGTCTAGACACTCAGCTGTTGACTATGATACATGCTTTGCAATCTTGAAACTTATGGTACCTGGCTTGGCTGATAAATCTGCTGGTTACTTCGGAGTGCAATTTCTCCTTTATTCTCATGCACAATGGTGTTTGCTTTATTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGTTAATGGCACATCGGATTAA

Coding sequence (CDS)

ATGTCGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCCACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCCTGTTTTCTCATTCAAGATGTTGAAGTTTATTTGGTGTGTATTGTTATCCACATTTATACAAGATCCCTGGATCTTGAACCCACGTTTTGCACATGTGTTAGCAGAGAGGCTTAGGCTGTTGACTACCCTCCTAATAGACATACTAAGAAATGAGAAAGAAAATGAATTAGAATATGCCTTCATTGTGTTAATTGGCGTACCACAAAATAAGTATAAGATTCCTGAATATGATCCACATATGCGTACAGGATGGCAGTCTAGACACTCAGCTGTTGACTATGATACATGCTTTGCAATCTTGAAACTTATGGTACCTGGCTTGGCTGATAAATCTGCTGGTTACTTCGGAGTGCAATTTCTCCTTTATTCTCATGCACAATGGTGTTTGCTTTATTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGTTAATGGCACATCGGATTAA

Protein sequence

MSKGFSSLNPKAMALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKVSWDHFPVFSFKMLKFIWCVLLSTFIQDPWILNPRFAHVLAERLRLLTTLLIDILRNEKENELEYAFIVLIGVPQNKYKIPEYDPHMRTGWQSRHSAVDYDTCFAILKLMVPGLADKSAGYFGVQFLLYSHAQWCLLYFLDGWVIFAEYARPRPPPGNNVNGTSD

Homology

[Close]

BLAST of Cla97C05G096140 vs. NCBI nr
Match: KAG6592009.1 (Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.0 bits (689), Expect = 2.6e-68
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 3   KGFSSLNPKAMALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKP-EPSTNAFLSG 62
           +GFSSLNPKAMALRSAAAAAPRSLRRLITGTS RTLPI   AIHD EKP  P+TNAF+SG
Sbjct: 43  QGFSSLNPKAMALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSG 102

Query: 63  RLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHAR 122
           RLFSSASTSSFIPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHAR
Sbjct: 103 RLFSSASTSSFIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHAR 162

Query: 123 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK
Sbjct: 163 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 196

[Close]

BLAST of Cla97C05G096140 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 270.0 bits (689), Expect = 2.6e-68
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAAAAPRSLRRLITGTSTRTLPIIS  IHDWEK EPSTNAFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           IPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-65
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEKP PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-65
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEKP PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-65
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LIT TSTRTLPIIS AIHDWEKPEPST  FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           IPPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-27
Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 38  LPIISHAIHDWEKPEPSTNAFLSGRLF-SSASTSSFIPPPLPPSAQQREMPEPSTNLFVS 97
           LP IS A+      E ++      RLF S+AS  SF+ P        R   EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 98  GLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGK
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-12
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 59  LSGRLFSSA-STSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 118
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 119 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           +H  +V D+V    KGF F++Y T E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 79  PSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 138
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 139 YATLEDAAKGIEGMDGK 156
           + + E A+  I+ +DG+
Sbjct: 88  FTSSEAASSAIQALDGR 104

[Close]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-10
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 94  FVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMD 153
           FV GL+  T  E L +AFA FG+V+ ++V+TDR TG S+GFGFV +++ +     IE M+
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 154 GK 156
           GK
Sbjct: 71  GK 72

[Close]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.8e-10
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 90  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 149
           ST LF+ GLS  T    L +AFA FG+VV A+V+ DR TG S+GFGFV +     A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 150 EGMDGK 156
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEKP PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LIT TSTRTLPIIS AIHDWEKPEPST  FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           IPPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEKP PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.2e-64
Identity = 131/143 (91.61%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAAAAPRSLRRLITGTS RTLP+   AIHD EKP P+TNAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           IPPPLPPSA QRE PEPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 13  MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSF 72
           MALRSAAA APRSLRRLITGTS+RTLPIIS AI DWEK E STNAF+SGRLFSS S SSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 73  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 132
           IPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 133 GFGFVKYATLEDAAKGIEGMDGK 156
           GFGFVKYATLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of Cla97C05G096140 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.0 bits (310), Expect = 2.1e-28
Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 38  LPIISHAIHDWEKPEPSTNAFLSGRLF-SSASTSSFIPPPLPPSAQQREMPEPSTNLFVS 97
           LP IS A+      E ++      RLF S+AS  SF+ P        R   EPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 98  GLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           GLSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGK
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of Cla97C05G096140 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 7.2e-16
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 57  AFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGE 116
           AF+S      A +SS +    P    +R     S  LFVSGLS+ TT EKL +AFA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 117 VVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           +V ARV+TDR +G SKGFGFV YAT+EDA K    M+ K
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAK 98

[Close]

BLAST of Cla97C05G096140 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-13
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 59  LSGRLFSSA-STSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 118
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 119 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 156
           +H  +V D+V    KGF F++Y T E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of Cla97C05G096140 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 79  PSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 138
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 139 YATLEDAAKGIEGMDGK 156
           + + E A+  I+ +DG+
Sbjct: 88  FTSSEAASSAIQALDGR 104

[Close]

BLAST of Cla97C05G096140 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-11
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 90  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 149
           ST LF+ GLS  T    L +AFA FG+VV A+V+ DR TG S+GFGFV +     A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 150 EGMDGK 156
             MDGK
Sbjct: 94  SEMDGK 99

The following BLAST results are available for this feature:

BLAST of Cla97C05G096140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592009.1	2.6e-68	92.21	Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita arg...	[more]
XP_038896843.1	2.6e-68	97.20	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_008454580.1	1.6e-65	92.31	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
KAA0063485.1	1.6e-65	92.31	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycin...	[more]
XP_004151968.1	1.6e-65	93.71	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]

BLAST of Cla97C05G096140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	3.0e-27	60.50	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.1e-12	43.88	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FNR1	4.4e-10	42.86	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q99070	7.5e-10	48.39	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
Q9SVM8	9.8e-10	51.52	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Cla97C05G096140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DR24	7.6e-66	92.31	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LD10	7.6e-66	93.71	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A1S3C066	7.6e-66	92.31	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1INZ4	3.2e-64	91.61	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1FQV3	1.2e-63	92.31	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]

BLAST of Cla97C05G096140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	2.1e-28	60.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	7.2e-16	50.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.5e-13	43.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	3.1e-11	42.86	glycine-rich RNA-binding protein 3	[more]
AT4G13850.1	6.9e-11	51.52	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 92..166 e-value: 2.7E-20 score: 83.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 93..156 e-value: 3.3E-18 score: 65.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 91..155 score: 16.210192
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 78..163 e-value: 1.1E-23 score: 85.9
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 62..157
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 62..157 coord: 295..315
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 295..315
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 73..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G096140.2	Cla97C05G096140.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding