Cla97C05G083150 (gene) Watermelon (97103) v2.5

Overview
NameCla97C05G083150
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionreplication factor C subunit 3-like
LocationCla97Chr05: 2359421 .. 2362993 (-)
RNA-Seq ExpressionCla97C05G083150
SyntenyCla97C05G083150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTCTTTAGTTTTTAAATATTAGTTTTGATTTCAAAGACATTTTCTGAGAAGTATAGAAAGGAAAGAAAAACGTCCGTATAGGAAAAAAAAGAGCATAATTACACTTGTGCTACATTTGAACAAAAGGATACAATTTTTTTTAATAATAAATGTTAAAATTTCATTTTATCAAGAAATTTCTCTTTAATATTTTTTTTCAAAAAAAAAAAGCCAAATTTTGTTTAAGTTAACGTTGAAATTCTCATACTCCACGTACTATAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTATTAGTAATAACATATTAAGCTAAATATTAAATAAAGTACAATTTAAGAACATGAAACTATTTTAACAAGAAATGATTTTTATTATGCTTAATAATGAAAATAGATTGTGGAAGTGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGGTTAGGGATTAAATTAAATTCTCAGATTATTTTTAGGTTTTATTCTGATGAATTAATTTAGGGTAATTTGATGGTGAAATTATTAATGATTTGCAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTAATTAACTAACTATATCTTAGAAGAATTTTCTTAAACTTTATTTAATTTTAAAACTAATTTCTAATGACCTTTTCTCACAGCCATTTTTTACGTTACCACTTTAAAAGAGAATGATTTGAAATTGTGATATTATTTTGTTTTTAAAATTAAGTTCAAAAACTTTGATTTGTTATTACCTACTTTTTTGTGAATATTTTCAAAAACCTAGTTTTGAAATATATATATATATGTTATGTTTGGAGTTTGGCTAAGAGTTTGCTGAAAACCTTGTTAAAAAATGGTTAGAAAATAAGCTAACAAATAATTAATTAACTATATTTCCTATTTTAATTTTTTATTTATAATTTAATTTTAAGACTATTTTTAAATATAGCTAAAATAATCCGATGTCTCCCTACATTATATTATATTATATTATATTATATTATAGCAAAAGTGAATAATGGAGCTTCGATTAAGTACAAGTATTGTACATTTAAAATTAATGTTTAATTGTTTTTTTTTTTTTGTTCATTCACAGGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATGTCTCCCCCAATTTCATTTTTAGGGTAATTTTCTTTTTGTAATTTCCTTTTTATCTCTTTTTTTTAAAATTATTTTTAAATATATCAAAATGAGTCAAAATATTTATAAATATAACAAAATGTTATTATCTATCACTAATAGACAACAATAGATACTGATATACACTTGTACCTATCAGTGTTTATCGATTTCTATCAATGATAAACATAACATTTTCTTATATTTGTAAATATTACTAACAGTTTGCCATTCAAAACAATTACAATTATTATTATTATTATTTTTTAAAATTCTCTCTTCCATTCGTCAATATTACATTACTAGACAAGTAGGTCTTGGGGTAATTGTGTTGGGTAGCATTTCTAGGCATAATAATTAAGTGTACAACAATATTTTGAAAAAAATTGTAAATATAGCAAATTAAAATCTATCACTGATAGACCCATACTAGTGATATGGTCTATCATTGATAGACAAATCTATCACTGGTAGACTTCGATAGCATAATCCAATTTTTATATATATATATAAATTCTTTTGAGACTAATGACTATATTTGTAATTGCTAATAAGTCTTACTCACAAACAATTAATTAATTTCCAAAGAATTATTCAAATTATCATGCTAAAACGTCAATAGGTTTAATATTTGATTTCCACTCCTACAATCATATAGAGAAAAAAAAAAAAAAACTTTTCTACATTTATAAATAAGTGAAAATTGCAAATATTGCAATTAGGTCAAAATAGATATAACAAAATTTAGATTATATATTTTCAAAGTATACCAATAATAGATCATATTGTTGATAGAAGTCTATCATTGATAGATTTGACTATATTTGCAATTTTTTAAAAATATTATTATAAACTTATGTATTATCTCTTAAAGTGCTACTTACTGCAATTACTTTATAAATAATTATCAACCACATTTGTTGCGGTCATTCTATTTAATTTCTCGTAATTTAGTTTTCTCTCTCTCATTTATCTAATGGATGTTCATGTGCAGACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATGTAAGTTTCTAATTTCTTTTATTATAAATTAAATTTGTGCATGCCTAGCTAGTACAAGATTTGTTAATGTTAGTGCCATTTTATTATAAAGTAATTTTTTTTCTTTTTCTATAAATTGAGAAATAAAATGTGAATGAAATATTCAAAGAATAATATTAATGTAGATGTTAATTTGATTTTCAGAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATGTTAACCACTTCTTGAAGATTGAAGGTAATCTTAATTAAGTGAAAATTGTTTTTTTTTTTTTTCGATTTAATTTTCATTTAGTATTTAAATTTTTAAATATTACATTTTTAGTCCAATTTTAAAGTTTATTTCAATTTAGTTTATAAGTTTCAAATGTTACAATTTTATCCTTAAATTTGAGCTTTGTTTCAATTTATTTCTTAGATTTATCAAATTTTACACTTTTAACATCAAATTTTCATTAAATACTCATTTAAGTTTTTTTTTTTGGCTTTCATGTCAATTAATTAATTTAAAATATATAATTATGAATTAGATTTTTAAAATTAATTTTACGTAAATTTGAATATTTTATTGTATTTTACATATTTTGACCATTTCTGATCTATTTATATAAAATTTTAACTTCTTGAAATATTTCAAAAAGAAGATAAATATTTATTATGCTATTTGTTTAAATACTTTATATTAGTCATTTCAGAAACTAAAAGGAAACTGGTAAAGATTTTTGTTTCTTAATTTTTTATTTCTAAAAAATAATTTTATTTATTCAAAATTGCATTGGCTATATCTTTTCCTTTTTGAAAAAGACTTTTTAAACCTTAGCTATCTTTATATAAAAACAATATAGCCTACTTATTAATAAACACAAAATTACATAAAGATTTTTAAAAGATTCTTCCAAGTAAGAGTACAAAAGAAAGAAAAATTCCAAAAAACAATAATGCTTTTTTTTTTTTTTGTGCCAAAAAACACAATAGGGGTCTGAATTTTTAAAGACTATTTTTTGGTGAAGAACTTTAAAAGTAAAAATTATTAAAGCACATATAATTAAATTCTCTCTTTATTTCTTCATTTTCTTGTACAGAATTTATAG

mRNA sequence

ATGATGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATAATTTATAG

Coding sequence (CDS)

ATGATGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATAATTTATAG

Protein sequence

MMLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEGFYADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKNNL
Homology
[Close]
BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_011650816.1 (replication factor C subunit 3 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNS+NNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 433 VLEFIAKQQGFDLSKRLAERIADNSRNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 492

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 493 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 552

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNK+EEK FV E+GSGEEAV+KGQHD +RKN
Sbjct: 553 YADYNKLEEKVFVSEKGSGEEAVIKGQHDSIRKN 586

[Close]
BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 436 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 495

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 496 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 555

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 556 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 589

[Close]
BLAST of Cla97C05G083150 vs. NCBI nr
Match: TYK17490.1 (replication factor C subunit 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 356 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 415

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 416 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 475

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 476 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 509

[Close]
BLAST of Cla97C05G083150 vs. NCBI nr
Match: KAA0049072.1 (replication factor C subunit 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 422 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 481

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 482 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 541

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 542 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 575

[Close]
BLAST of Cla97C05G083150 vs. NCBI nr
Match: KAG7028697.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 7.6e-63
Identity = 132/154 (85.71%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 354 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 413

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVE F
Sbjct: 414 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESF 473

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV E+G+GEEAV+K  HDPMRKN
Sbjct: 474 YADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKN 507

[Close]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-10
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEF+AK++   L +  A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ 
Sbjct: 197 VLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKL--------IEYDTLVDELKKFLDEELQRRVEGF 118
           +A++A  +++EQSPK+L+ VRGK+ +L        +    L+ EL K LD EL+  V  +
Sbjct: 257 VAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHW 316

[Close]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match: Q54BN3 (Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=rfc3 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  +A  + FDL  +LA  +A  S  NLR A+  LE+   K   F+  E  LL  WE+ 
Sbjct: 195 VLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTELPLL-DWENY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIE--------YDTLVDELKKFLDEELQRRVEGF 121
           I+ + K   EEQSP +L IVRGKL +L+         + TL+ E+ K LD  ++  +  +
Sbjct: 255 ISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHW 314

Query: 122 YADYNKMEEKSFVGER 130
            + Y   E +S +G +
Sbjct: 315 ASYY---EHRSQIGSK 326

[Close]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match: P40938 (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-07
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  + K++G +L  +LA R+A+ S  NLR+A+   EA   +   F  D+    T WE  
Sbjct: 195 VLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEG 113
           + + A  IV +Q+P++L  VRG+L +L+ +    + + K L  EL    +G
Sbjct: 255 LRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDG 305

[Close]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.2e-07
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  + K++G +L  +LA R+A+ S  NLR+A+   EA   +   F  D+    T WE  
Sbjct: 195 VLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEG 113
           + + A  IV +Q+P++L  VRG+L +L+ +    + + K L  EL    +G
Sbjct: 255 LRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDG 305

[Close]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.2e-07
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFI K++   L    A RIA  S  NLR+AI   E    +   F  ++      WE  
Sbjct: 197 VLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIE--------YDTLVDELKKFLDEELQRRVEGF 121
           ++++A  I++EQSPK+L+ VR K  +L+            L+ EL K LD +L+  +  +
Sbjct: 257 VSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHW 316

Query: 122 YADYNKMEEKSFVGER 130
            A Y   E K  +G +
Sbjct: 317 AAHY---EHKMRLGSK 329

[Close]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match: A0A5D3D1K1 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003550 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.9e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 356 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 415

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 416 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 475

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 476 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 509

[Close]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match: A0A5A7TZV7 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003010 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.9e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 422 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 481

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 482 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 541

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 542 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 575

[Close]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match: A0A1S3AWH3 (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.9e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 436 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 495

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 496 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 555

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 556 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 589

[Close]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match: A0A6J1IEE5 (replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.2e-63
Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 424 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 483

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVE F
Sbjct: 484 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESF 543

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV ++G+GEEAV+K  HDPMRKN
Sbjct: 544 YADYNKMEEKPFVTDKGNGEEAVIKELHDPMRKN 577

[Close]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match: A0A6J1G337 (replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450354 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 131/154 (85.06%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 415 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 474

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQ RVE F
Sbjct: 475 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQHRVESF 534

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV E+G+GEEAV+K  HDPMRKN
Sbjct: 535 YADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKN 568

[Close]
BLAST of Cla97C05G083150 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-11
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0 

Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEF+AK++   L +  A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ 
Sbjct: 197 VLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKL--------IEYDTLVDELKKFLDEELQRRVEGF 118
           +A++A  +++EQSPK+L+ VRGK+ +L        +    L+ EL K LD EL+  V  +
Sbjct: 257 VAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHW 316

The following BLAST results are available for this feature:
BLAST of Cla97C05G083150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650816.11.3e-6588.31replication factor C subunit 3 [Cucumis sativus][more]
XP_008438224.11.6e-6588.96PREDICTED: replication factor C subunit 3-like [Cucumis melo][more]
TYK17490.11.6e-6588.96replication factor C subunit 3-like [Cucumis melo var. makuwa][more]
KAA0049072.11.6e-6588.96replication factor C subunit 3-like [Cucumis melo var. makuwa][more]
KAG7028697.17.6e-6385.71Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
BLAST of Cla97C05G083150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VXX47.8e-1036.29Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1[more]
Q54BN33.3e-0834.56Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=... [more]
P409384.7e-0732.43Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2[more]
Q2TBV16.2e-0732.43Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1[more]
Q852K36.2e-0732.35Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ... [more]
BLAST of Cla97C05G083150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D1K17.9e-6688.96Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TZV77.9e-6688.96Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A1S3AWH37.9e-6688.96replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4... [more]
A0A6J1IEE58.2e-6385.06replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 ... [more]
A0A6J1G3371.4e-6285.06replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC11145035... [more]
BLAST of Cla97C05G083150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27740.15.5e-1136.29ATPase family associated with various cellular activities (AAA) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 1..49
e-value: 1.6E-9
score: 39.2
NoneNo IPR availableGENE3D1.20.272.10coord: 57..131
e-value: 3.0E-11
score: 45.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..149
NoneNo IPR availablePANTHERPTHR11669:SF52OS10G0574500 PROTEINcoord: 2..126
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 2..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G083150.1Cla97C05G083150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006281 DNA repair
cellular_component GO:0005663 DNA replication factor C complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003689 DNA clamp loader activity